Wall clock time and date at job start Tue Mar 31 2020 08:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.50064 * 2 1 4 4 C 1.53193 * 109.49552 * 120.06071 * 2 1 3 5 5 N 1.46932 * 108.77537 * 174.58995 * 4 2 1 6 6 C 1.34773 * 120.63180 * 126.36829 * 5 4 2 7 7 O 1.21680 * 120.00212 * 353.22701 * 6 5 4 8 8 C 1.46793 * 119.99685 * 173.22502 * 6 5 4 9 9 C 1.36408 * 125.84681 * 155.63346 * 8 6 5 10 10 C 1.41280 * 107.03204 * 179.85115 * 9 8 6 11 11 C 1.43198 * 126.45374 * 180.15865 * 10 9 8 12 12 N 9.31625 * 158.84746 * 84.45556 * 2 1 3 13 13 C 1.38181 * 107.08981 * 0.41361 * 10 9 8 14 14 N 1.34418 * 108.38647 * 359.74540 * 13 10 9 15 15 H 0.97000 * 125.40633 * 180.02562 * 14 13 10 16 16 C 1.46929 * 118.73634 * 306.38828 * 5 4 2 17 17 C 1.53201 * 108.77300 * 53.60834 * 16 5 4 18 18 C 1.53029 * 109.49945 * 239.90003 * 2 1 3 19 19 H 1.09001 * 109.46341 * 298.70399 * 18 2 1 20 20 N 1.46504 * 109.46369 * 58.65991 * 18 2 1 21 21 C 1.36932 * 120.00227 * 205.06786 * 20 18 2 22 22 H 1.07996 * 120.00066 * 0.02562 * 21 20 18 23 23 C 1.38821 * 119.99702 * 180.02562 * 21 20 18 24 24 N 1.31617 * 119.99471 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99984 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.46978 * 90.00336 * 25 23 21 27 27 H 1.48502 * 109.47115 * 210.00160 * 25 23 21 28 28 H 1.48497 * 109.47287 * 330.00395 * 25 23 21 29 29 H 1.09005 * 109.47300 * 299.94171 * 1 2 3 30 30 H 1.08999 * 109.47056 * 59.93959 * 1 2 3 31 31 H 1.09001 * 109.47379 * 179.97438 * 1 2 3 32 32 H 1.08989 * 109.59084 * 54.80232 * 4 2 1 33 33 H 1.09004 * 109.58924 * 294.36887 * 4 2 1 34 34 H 1.07999 * 126.48342 * 0.02562 * 9 8 6 35 35 H 1.08004 * 125.80401 * 179.74844 * 13 10 9 36 36 H 1.08993 * 109.58912 * 293.82394 * 16 5 4 37 37 H 1.08997 * 109.58833 * 173.39429 * 16 5 4 38 38 H 1.09004 * 109.49274 * 65.31730 * 17 16 5 39 39 H 1.08992 * 109.49560 * 185.41056 * 17 16 5 40 40 H 0.97005 * 119.99436 * 25.07145 * 20 18 2 41 41 H 0.97005 * 119.99495 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7234 1.2499 5 7 3.5046 -0.8287 1.1700 6 6 4.2810 -0.3848 2.1781 7 8 3.7826 0.2190 3.1096 8 6 5.7282 -0.6297 2.1525 9 6 6.6752 0.1108 2.7970 10 6 7.9275 -0.4746 2.5052 11 6 9.2050 -0.0288 2.9741 12 7 10.2185 0.3248 3.3461 13 6 7.6879 -1.5547 1.6774 14 7 6.3629 -1.6432 1.4686 15 1 5.9235 -2.3143 0.9233 16 6 4.1053 -1.4267 -0.0302 17 6 3.5708 -0.6954 -1.2657 18 6 2.0408 -0.7234 -1.2480 19 1 1.6967 -1.7576 -1.2347 20 7 1.5265 -0.0538 -2.4453 21 6 1.3951 -0.7508 -3.6166 22 1 1.6703 -1.7944 -3.6577 23 6 0.9083 -0.1161 -4.7511 24 7 0.7816 -0.7862 -5.8768 25 14 0.4317 1.6887 -4.6797 26 1 1.6103 2.5257 -5.0200 27 1 -0.6594 1.9514 -5.6522 28 1 -0.0344 2.0238 -3.3102 29 1 -0.3634 0.5129 0.8905 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6053 -1.7211 1.2987 33 1 1.7637 -0.1571 2.1390 34 1 6.5006 0.9785 3.4159 35 1 8.4376 -2.2154 1.2678 36 1 3.8376 -2.4818 -0.0858 37 1 5.1895 -1.3246 0.0143 38 1 3.9159 0.3385 -1.2541 39 1 3.9334 -1.1904 -2.1665 40 1 1.2790 0.8834 -2.4082 41 1 0.4418 -0.3426 -6.6697 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035971663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:16 Heat of formation + Delta-G solvation = 44.429076 kcal Electronic energy + Delta-G solvation = -24270.559303 eV Core-core repulsion = 20765.282110 eV Total energy + Delta-G solvation = -3505.277193 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.77672 -40.79904 -38.98971 -37.44565 -36.34257 -34.56951 -33.26371 -32.48861 -31.58925 -30.72416 -27.76223 -26.80921 -24.57524 -23.97038 -23.01612 -22.83974 -21.40632 -21.09640 -19.60814 -19.05714 -17.75270 -17.16656 -16.89684 -16.60236 -16.48359 -16.00734 -15.44407 -15.27020 -14.91806 -14.82591 -14.79095 -14.48150 -14.32226 -14.24005 -14.01726 -13.77896 -13.67766 -13.42439 -12.96187 -12.94089 -12.90385 -12.81910 -12.41815 -12.08603 -12.03915 -11.86039 -11.75171 -11.22792 -11.15912 -10.89371 -10.14622 -9.79019 -9.35167 -9.23882 -7.98801 -5.29894 0.44462 0.77248 1.39570 1.40040 1.47532 1.66747 1.87198 1.91370 2.27968 2.50373 2.68131 3.13272 3.33594 3.50369 3.58760 3.78201 3.92070 4.02264 4.18081 4.18780 4.22950 4.35181 4.45083 4.54152 4.61884 4.73637 4.77949 4.83848 4.92072 4.92576 5.01907 5.16947 5.27418 5.37117 5.39176 5.45711 5.58290 5.63697 5.82462 6.25646 6.26495 6.33895 6.66057 7.01472 7.12092 7.89811 8.06676 9.22571 Molecular weight = 302.15amu Principal moments of inertia in cm(-1) A = 0.020004 B = 0.003416 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.404661 B = 8194.906626 C = 8851.229801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 H 0.059 0.941 4 C 0.127 3.873 5 N -0.604 5.604 6 C 0.588 3.412 7 O -0.569 6.569 8 C -0.058 4.058 9 C -0.066 4.066 10 C -0.160 4.160 11 C 0.316 3.684 12 N -0.489 5.489 13 C 0.138 3.862 14 N -0.511 5.511 15 H 0.445 0.555 16 C 0.097 3.903 17 C -0.144 4.144 18 C 0.181 3.819 19 H 0.055 0.945 20 N -0.749 5.749 21 C -0.214 4.214 22 H 0.066 0.934 23 C -0.063 4.063 24 N -0.984 5.984 25 Si 0.943 3.057 26 H -0.285 1.285 27 H -0.302 1.302 28 H -0.254 1.254 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.149 0.851 35 H 0.235 0.765 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.361 0.639 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.663 -5.041 16.408 19.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 H 0.078 0.922 4 C 0.005 3.995 5 N -0.336 5.336 6 C 0.378 3.622 7 O -0.448 6.448 8 C -0.169 4.169 9 C -0.093 4.093 10 C -0.170 4.170 11 C 0.002 3.998 12 N -0.167 5.167 13 C -0.008 4.008 14 N -0.111 5.111 15 H 0.292 0.708 16 C -0.026 4.026 17 C -0.185 4.185 18 C 0.073 3.927 19 H 0.073 0.927 20 N -0.391 5.391 21 C -0.345 4.345 22 H 0.084 0.916 23 C -0.254 4.254 24 N -0.635 5.635 25 Si 0.772 3.228 26 H -0.211 1.211 27 H -0.229 1.229 28 H -0.179 1.179 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.167 0.833 35 H 0.252 0.748 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.194 0.806 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.753 -4.469 17.240 20.804 hybrid contribution -1.121 1.058 -1.097 1.892 sum 9.632 -3.412 16.143 19.105 Atomic orbital electron populations 1.21642 0.93901 1.02423 1.01403 1.21675 0.96780 0.99512 0.94550 0.92248 1.21664 0.78258 1.01791 0.97814 1.48115 1.07227 1.60315 1.17895 1.17358 0.84820 0.78216 0.81842 1.90825 1.74427 1.42860 1.36734 1.19583 0.91651 0.98034 1.07587 1.21065 0.89585 0.99709 0.98972 1.15394 0.86029 1.03809 1.11738 1.24850 0.91569 0.91864 0.91520 1.81301 1.12753 1.10570 1.12031 1.23015 0.85446 0.96894 0.95459 1.42533 1.06852 1.24412 1.37328 0.70829 1.22340 0.99036 0.98582 0.82665 1.22447 0.97987 1.00548 0.97531 1.20443 0.91867 0.95757 0.84597 0.92677 1.42830 1.78392 1.10144 1.07727 1.19012 1.33500 0.94778 0.87186 0.91585 1.25351 1.02917 1.01533 0.95593 1.69854 1.54662 1.37484 1.01490 0.85590 0.77463 0.81981 0.77790 1.21131 1.22916 1.17897 0.91429 0.93991 0.92021 0.89109 0.89372 0.83305 0.74831 0.87918 0.87611 0.93123 0.91072 0.80627 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.02 71.98 0.65 -2.90 16 2 C -0.11 -2.74 2.46 -10.72 -0.03 -2.77 16 3 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 4 C 0.13 2.70 5.73 86.36 0.49 3.20 16 5 N -0.60 -11.81 2.97 -823.47 -2.45 -14.25 16 6 C 0.59 13.06 7.62 86.48 0.66 13.72 16 7 O -0.57 -17.03 16.38 -4.29 -0.07 -17.10 16 8 C -0.06 -0.93 6.31 40.02 0.25 -0.68 16 9 C -0.07 -1.13 10.62 22.59 0.24 -0.89 16 10 C -0.16 -2.17 5.97 -21.30 -0.13 -2.29 16 11 C 0.32 5.93 15.83 88.33 1.40 7.33 16 12 N -0.49 -12.00 18.54 19.00 0.35 -11.65 16 13 C 0.14 0.78 11.90 84.28 1.00 1.79 16 14 N -0.51 -3.78 4.66 -183.25 -0.85 -4.64 16 15 H 0.44 1.03 6.37 -92.71 -0.59 0.44 16 16 C 0.10 1.49 5.29 86.37 0.46 1.94 16 17 C -0.14 -3.67 5.66 30.67 0.17 -3.50 16 18 C 0.18 5.58 2.19 45.01 0.10 5.68 16 19 H 0.06 1.74 8.08 -2.39 -0.02 1.72 16 20 N -0.75 -31.01 4.21 -322.82 -1.36 -32.37 16 21 C -0.21 -11.03 10.41 84.04 0.87 -10.16 16 22 H 0.07 3.68 8.06 -2.91 -0.02 3.66 16 23 C -0.06 -3.49 5.50 84.86 0.47 -3.03 16 24 N -0.98 -60.42 13.97 21.65 0.30 -60.12 16 25 Si 0.94 44.01 27.74 68.60 1.90 45.91 16 26 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 27 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 28 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 29 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.04 1.32 7.37 -2.39 -0.02 1.30 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 2.04 7.00 -2.39 -0.02 2.02 16 34 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 35 H 0.24 -0.81 8.06 -2.91 -0.02 -0.83 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.11 1.09 4.22 -2.39 -0.01 1.08 16 38 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.36 15.06 5.37 -92.70 -0.50 14.56 16 41 H 0.25 15.12 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -75.83 341.59 4.37 -71.46 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -0.07 Total: 15.30 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 6.61 Total: 7.45 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -4.01 Total: -123.03 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.07 Total: -17.10 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.90 Total: 45.91 kcal Total: -75.83 4.37 -71.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035971663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.885 kcal (2) G-P(sol) polarization free energy of solvation -75.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds