Wall clock time and date at job start Tue Mar 31 2020 08:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47215 * 2 1 4 4 S 1.81407 * 109.47013 * 179.97438 * 3 2 1 5 5 C 1.81404 * 102.99890 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47336 * 179.97438 * 5 4 3 7 7 O 1.21286 * 119.99729 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00408 * 179.97438 * 6 5 4 9 9 C 1.46491 * 120.00045 * 180.02562 * 8 6 5 10 10 H 1.08993 * 109.45417 * 35.03630 * 9 8 6 11 11 C 1.53041 * 109.46019 * 275.06514 * 9 8 6 12 12 C 1.53200 * 109.31258 * 178.61410 * 11 9 8 13 13 N 1.47200 * 108.85268 * 54.65747 * 12 11 9 14 14 C 1.36934 * 120.81788 * 126.33942 * 13 12 11 15 15 H 1.07997 * 120.00880 * 207.53149 * 14 13 12 16 16 C 1.38820 * 119.99352 * 27.53150 * 14 13 12 17 17 N 1.31613 * 120.00097 * 17.26040 * 16 14 13 18 18 Si 1.86807 * 119.99669 * 197.26046 * 16 14 13 19 19 H 1.48505 * 109.47107 * 90.00031 * 18 16 14 20 20 H 1.48498 * 109.47190 * 209.99825 * 18 16 14 21 21 H 1.48496 * 109.47303 * 330.00267 * 18 16 14 22 22 C 1.46928 * 118.55549 * 306.47771 * 13 12 11 23 23 C 1.53045 * 109.45897 * 155.00264 * 9 8 6 24 24 H 1.08995 * 109.49607 * 301.33550 * 23 9 8 25 25 O 1.42901 * 109.49823 * 61.43416 * 23 9 8 26 26 H 1.09008 * 109.46831 * 60.00192 * 1 2 3 27 27 H 1.08996 * 109.47193 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47310 * 300.00297 * 1 2 3 29 29 H 1.08997 * 109.47310 * 239.99703 * 2 1 3 30 30 H 1.09001 * 109.47111 * 119.99507 * 2 1 3 31 31 H 1.08997 * 109.47224 * 59.99650 * 3 2 1 32 32 H 1.09000 * 109.47361 * 299.99463 * 3 2 1 33 33 H 1.09002 * 109.46881 * 59.99730 * 5 4 3 34 34 H 1.09000 * 109.47354 * 300.00180 * 5 4 3 35 35 H 0.97006 * 119.99235 * 0.02562 * 8 6 5 36 36 H 1.08997 * 109.50290 * 298.56822 * 11 9 8 37 37 H 1.09005 * 109.49562 * 58.66737 * 11 9 8 38 38 H 1.09001 * 109.58317 * 174.42878 * 12 11 9 39 39 H 1.08999 * 109.58457 * 294.84960 * 12 11 9 40 40 H 0.97008 * 119.99917 * 179.97438 * 17 16 14 41 41 H 1.09008 * 109.58644 * 293.68413 * 22 13 12 42 42 H 1.09000 * 109.59015 * 173.40036 * 22 13 12 43 43 H 0.96703 * 113.99982 * 179.84258 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8541 1.4424 0.0008 5 6 4.2621 3.2100 -0.0001 6 6 5.7595 3.3798 0.0010 7 8 6.4804 2.4045 0.0019 8 7 6.2976 4.6155 0.0001 9 6 7.7532 4.7805 0.0007 10 1 8.2090 3.9848 -0.5883 11 6 8.2735 4.7128 1.4384 12 6 9.7992 4.8511 1.4321 13 7 10.1620 6.0854 0.7169 14 6 10.9691 7.0240 1.3024 15 1 10.8858 8.0620 1.0164 16 6 11.8946 6.6410 2.2636 17 7 12.2427 5.3766 2.3751 18 14 12.6458 7.9203 3.3989 19 1 11.8072 8.0544 4.6171 20 1 14.0155 7.4961 3.7851 21 1 12.7117 9.2272 2.6971 22 6 9.6366 6.2914 -0.6396 23 6 8.1128 6.1369 -0.6102 24 1 7.7217 6.1935 -1.6260 25 8 7.5426 7.1822 0.1800 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6768 1.9563 -0.8900 33 1 3.8428 3.6801 0.8894 34 1 3.8436 3.6791 -0.8905 35 1 5.7209 5.3955 -0.0009 36 1 7.8371 5.5234 2.0218 37 1 7.9967 3.7557 1.8806 38 1 10.1656 4.9027 2.4574 39 1 10.2418 3.9928 0.9266 40 1 12.8897 5.1091 3.0466 41 1 10.0660 5.5506 -1.3142 42 1 9.8958 7.2926 -0.9838 43 1 7.7327 8.0717 -0.1482 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099702621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:31 Heat of formation + Delta-G solvation = -73.197040 kcal Electronic energy + Delta-G solvation = -22743.711093 eV Core-core repulsion = 19336.484449 eV Total energy + Delta-G solvation = -3407.226644 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 302.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.76896 -37.97643 -35.00760 -34.93090 -34.30946 -31.99659 -30.67664 -29.47695 -28.47814 -27.56830 -24.98694 -22.43823 -22.16567 -21.79138 -20.25774 -19.45321 -17.37185 -16.92823 -16.59823 -16.01434 -15.89516 -15.63837 -15.26526 -14.66437 -14.25917 -14.14092 -13.92493 -13.84208 -13.59221 -13.32634 -13.15230 -12.88099 -12.50398 -12.11326 -12.01529 -11.80535 -11.50098 -11.23517 -11.18314 -11.01388 -10.86176 -10.70138 -10.31756 -10.23121 -10.06780 -10.04139 -9.88451 -9.61741 -9.34754 -8.72805 -8.41766 -7.77972 -6.68629 -5.78451 -3.20721 1.28660 2.37769 2.69989 3.32624 3.39046 3.45026 3.46243 4.46028 4.47069 4.52231 4.62963 4.78426 4.82566 4.90812 5.02965 5.05022 5.24570 5.24911 5.33555 5.33703 5.40382 5.59072 5.62645 5.71267 5.74191 5.86062 5.94303 6.22101 6.36386 6.46907 6.56736 6.62899 6.81763 6.90644 7.39901 7.63662 7.69533 7.78443 8.05787 8.33668 8.43673 9.18996 9.82059 10.38621 11.30073 Molecular weight = 302.15amu Principal moments of inertia in cm(-1) A = 0.033585 B = 0.002687 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.503137 B =10419.873341 C =10741.781126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.108 4.108 4 S -0.184 6.184 5 C -0.127 4.127 6 C 0.524 3.476 7 O -0.520 6.520 8 N -0.715 5.715 9 C 0.163 3.837 10 H 0.091 0.909 11 C -0.143 4.143 12 C 0.173 3.827 13 N -0.582 5.582 14 C -0.250 4.250 15 H 0.065 0.935 16 C 0.001 3.999 17 N -0.901 5.901 18 Si 0.904 3.096 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.280 1.280 22 C 0.118 3.882 23 C 0.082 3.918 24 H 0.046 0.954 25 O -0.555 6.555 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.401 0.599 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.020 0.980 40 H 0.254 0.746 41 H 0.027 0.973 42 H 0.061 0.939 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.638 -3.438 -6.762 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.257 4.257 4 S 0.043 5.957 5 C -0.278 4.278 6 C 0.308 3.692 7 O -0.396 6.396 8 N -0.366 5.366 9 C 0.059 3.941 10 H 0.109 0.891 11 C -0.183 4.183 12 C 0.046 3.954 13 N -0.304 5.304 14 C -0.379 4.379 15 H 0.082 0.918 16 C -0.197 4.197 17 N -0.545 5.545 18 Si 0.734 3.266 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.205 1.205 22 C -0.010 4.010 23 C 0.020 3.980 24 H 0.063 0.937 25 O -0.360 6.360 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.235 0.765 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -20.458 -5.571 -6.300 22.119 hybrid contribution -0.538 2.664 0.283 2.732 sum -20.995 -2.907 -6.017 22.033 Atomic orbital electron populations 1.21764 0.94759 1.02111 1.01978 1.21223 0.95907 0.93955 1.03544 1.23574 0.95678 1.01653 1.04748 1.87602 1.03922 1.06188 1.98035 1.23512 0.98339 0.99172 1.06800 1.19606 0.88508 0.83971 0.77137 1.90766 1.61830 1.38403 1.48599 1.46104 1.08770 1.07128 1.74631 1.21055 0.78225 0.95642 0.99152 0.89067 1.22487 1.00741 1.00664 0.94452 1.20843 0.87616 0.87299 0.99593 1.43972 1.55353 1.20950 1.10146 1.19117 1.11650 0.88247 1.18895 0.91751 1.25043 0.96928 0.96158 1.01601 1.70034 1.33910 1.15216 1.35367 0.86270 0.78159 0.80900 0.81267 1.21462 1.21811 1.20515 1.21533 0.90406 0.99676 0.89347 1.22632 0.96279 0.87118 0.91928 0.93663 1.86440 1.76594 1.16903 1.56083 0.92583 0.92127 0.92538 0.90933 0.90885 0.90205 0.90257 0.87417 0.87545 0.76506 0.91567 0.92950 0.89066 0.96152 0.93553 0.95503 0.92036 0.78098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.11 -0.78 5.94 -26.73 -0.16 -0.94 16 3 C -0.11 -0.86 5.94 37.16 0.22 -0.64 16 4 S -0.18 -2.25 20.88 -107.50 -2.24 -4.49 16 5 C -0.13 -1.37 6.42 36.00 0.23 -1.14 16 6 C 0.52 7.92 7.81 -10.99 -0.09 7.84 16 7 O -0.52 -10.18 15.53 5.55 0.09 -10.10 16 8 N -0.72 -10.29 5.05 -53.77 -0.27 -10.56 16 9 C 0.16 2.87 2.20 -67.89 -0.15 2.72 16 10 H 0.09 1.77 7.58 -51.93 -0.39 1.37 16 11 C -0.14 -2.96 5.51 -26.61 -0.15 -3.11 16 12 C 0.17 4.25 5.33 -3.56 -0.02 4.23 16 13 N -0.58 -14.32 2.95 -172.09 -0.51 -14.82 16 14 C -0.25 -6.73 9.59 -15.06 -0.14 -6.88 16 15 H 0.06 1.69 7.88 -52.49 -0.41 1.27 16 16 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 17 N -0.90 -26.38 11.18 55.49 0.62 -25.76 16 18 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.12 2.34 6.15 -3.71 -0.02 2.32 16 23 C 0.08 1.33 3.38 -26.61 -0.09 1.24 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 O -0.56 -8.75 12.09 -35.23 -0.43 -9.18 16 26 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.11 0.96 8.14 -51.92 -0.42 0.54 16 34 H 0.11 0.88 8.14 -51.92 -0.42 0.45 16 35 H 0.40 4.78 8.26 -40.82 -0.34 4.44 16 36 H 0.07 1.43 7.61 -51.93 -0.40 1.03 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.09 2.52 6.04 -51.93 -0.31 2.21 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 42 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 43 H 0.37 4.61 9.08 45.56 0.41 5.03 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -32.88 360.23 -8.91 -41.79 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.48 Total: 5.84 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -0.08 Total: 5.15 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.16 Total: -51.15 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.34 Total: -19.27 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Atomic # 16 Polarization: -2.25 SS G_CDS: -2.24 Total: -4.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.88 -8.91 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099702621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.407 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds