Wall clock time and date at job start Tue Mar 31 2020 07:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.46920 * 2 1 4 4 C 1.39490 * 119.99750 * 180.02562 * 3 2 1 5 5 C 1.38940 * 119.94388 * 359.71782 * 4 3 2 6 6 C 1.37803 * 120.15602 * 180.27417 * 5 4 3 7 7 C 1.39767 * 120.04321 * 0.02562 * 6 5 4 8 8 C 1.43198 * 120.05162 * 179.97438 * 7 6 5 9 9 N 7.57624 * 159.91234 * 0.50808 * 2 1 3 10 10 C 1.39818 * 119.89120 * 359.97438 * 7 6 5 11 11 C 1.38224 * 119.84465 * 0.02562 * 10 7 6 12 12 N 1.40031 * 120.02555 * 179.97438 * 11 10 7 13 13 C 1.46507 * 119.99498 * 0.02562 * 12 11 10 14 14 C 1.50700 * 109.47004 * 180.02562 * 13 12 11 15 15 O 1.21287 * 120.00276 * 0.02562 * 14 13 12 16 16 N 1.34770 * 120.00360 * 180.02562 * 14 13 12 17 17 C 1.46502 * 120.00562 * 180.02562 * 16 14 13 18 18 C 1.50697 * 109.47535 * 179.97438 * 17 16 14 19 19 H 1.08006 * 119.99473 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00139 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00227 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99928 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47256 * 90.00429 * 22 20 18 24 24 H 1.48503 * 109.47187 * 210.00627 * 22 20 18 25 25 H 1.48496 * 109.47282 * 330.00336 * 22 20 18 26 26 H 1.09003 * 109.47055 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47126 * 299.99995 * 1 2 3 28 28 H 1.09005 * 109.47021 * 60.00292 * 1 2 3 29 29 H 1.09005 * 109.46886 * 239.99545 * 2 1 3 30 30 H 1.08997 * 109.47169 * 119.99988 * 2 1 3 31 31 H 0.96996 * 119.99983 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.92176 * 0.25812 * 5 4 3 33 33 H 1.07993 * 119.97798 * 179.97438 * 6 5 4 34 34 H 1.07995 * 120.07585 * 180.02562 * 10 7 6 35 35 H 0.96996 * 120.00715 * 180.02562 * 12 11 10 36 36 H 1.08996 * 109.47353 * 299.99834 * 13 12 11 37 37 H 1.09000 * 109.47213 * 60.00844 * 13 12 11 38 38 H 0.97006 * 119.99906 * 359.97438 * 16 14 13 39 39 H 1.09001 * 109.46899 * 299.99630 * 17 16 14 40 40 H 1.09004 * 109.47146 * 59.99453 * 17 16 14 41 41 H 0.96994 * 120.00126 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3898 1.6361 -0.0005 5 6 4.2916 0.5792 0.0049 6 6 5.6473 0.8259 0.0100 7 6 6.1191 2.1416 0.0104 8 6 7.5279 2.3983 0.0164 9 7 8.6454 2.6020 0.0231 10 6 5.2132 3.2066 0.0050 11 6 3.8543 2.9539 -0.0002 12 7 2.9437 4.0176 -0.0051 13 6 3.4314 5.3992 -0.0053 14 6 2.2588 6.3458 -0.0103 15 8 1.1271 5.9094 -0.0130 16 7 2.4675 7.6772 -0.0119 17 6 1.3275 8.5975 -0.0162 18 6 1.8291 10.0185 -0.0165 19 1 2.8908 10.2164 -0.0142 20 6 0.9326 11.0660 -0.0209 21 7 -0.3603 10.8250 -0.0243 22 14 1.5543 12.8275 -0.0206 23 1 1.7240 13.2928 -1.4205 24 1 0.5732 13.6986 0.6752 25 1 2.8599 12.8915 0.6840 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.3880 2.1184 -0.0004 32 1 3.9292 -0.4382 0.0052 33 1 6.3457 0.0023 0.0146 34 1 5.5745 4.2244 0.0049 35 1 1.9902 3.8399 -0.0083 36 1 4.0335 5.5721 0.8867 37 1 4.0400 5.5695 -0.8933 38 1 3.3725 8.0263 -0.0094 39 1 0.7244 8.4245 -0.9075 40 1 0.7197 8.4272 0.8725 41 1 -0.9910 11.5619 -0.0277 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776848607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:36 Heat of formation + Delta-G solvation = 17.839211 kcal Electronic energy + Delta-G solvation = -22913.688755 eV Core-core repulsion = 19407.258538 eV Total energy + Delta-G solvation = -3506.430216 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.22948 -38.99633 -37.06230 -36.00648 -35.17025 -34.29890 -32.47083 -31.81599 -30.26453 -28.77588 -27.78955 -26.14780 -24.02327 -22.82716 -22.55789 -21.32646 -19.98453 -19.16531 -17.82170 -17.18497 -16.59821 -15.93229 -15.51230 -15.46355 -15.25742 -15.03538 -14.75155 -14.45074 -14.11019 -14.09609 -13.81151 -13.51466 -13.42342 -12.77575 -12.76962 -12.66884 -12.58033 -12.14971 -12.06653 -11.95146 -11.91652 -11.69474 -11.28422 -11.05476 -10.94950 -10.39852 -10.27499 -10.11767 -9.49868 -9.33867 -8.83637 -8.34081 -8.06186 -7.01216 -6.24532 -4.32034 0.87634 1.39222 2.66984 2.97851 2.99528 3.10577 3.19954 3.26106 3.28057 3.33329 3.89436 3.92362 4.05286 4.29957 4.60537 4.67105 4.77537 4.93363 5.04369 5.12089 5.15252 5.23314 5.31612 5.35483 5.40771 5.45499 5.58668 5.64617 5.73354 5.76177 5.98407 6.30179 6.47816 6.81356 7.13528 7.20986 7.26369 7.35253 7.39052 7.52042 7.55695 7.72312 7.87124 8.43729 8.63783 8.88603 9.34796 10.85594 Molecular weight = 302.15amu Principal moments of inertia in cm(-1) A = 0.014267 B = 0.002861 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.165023 B = 9785.382761 C =11716.492227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.744 5.744 4 C 0.187 3.813 5 C -0.166 4.166 6 C -0.072 4.072 7 C -0.049 4.049 8 C 0.267 3.733 9 N -0.441 5.441 10 C -0.115 4.115 11 C 0.157 3.843 12 N -0.735 5.735 13 C 0.105 3.895 14 C 0.494 3.506 15 O -0.556 6.556 16 N -0.705 5.705 17 C 0.250 3.750 18 C -0.546 4.546 19 H 0.064 0.936 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.400 0.600 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.406 0.594 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.394 0.606 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.965 -21.985 0.049 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.002 4.002 3 N -0.376 5.376 4 C 0.080 3.920 5 C -0.191 4.191 6 C -0.096 4.096 7 C -0.056 4.056 8 C -0.047 4.047 9 N -0.117 5.117 10 C -0.142 4.142 11 C 0.052 3.948 12 N -0.371 5.371 13 C -0.023 4.023 14 C 0.278 3.722 15 O -0.436 6.436 16 N -0.353 5.353 17 C 0.129 3.871 18 C -0.584 4.584 19 H 0.082 0.918 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.236 0.764 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.245 0.755 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.227 0.773 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.676 -21.864 0.063 22.860 hybrid contribution -0.419 1.422 -0.017 1.483 sum 6.257 -20.441 0.046 21.378 Atomic orbital electron populations 1.21998 0.94513 1.03042 1.03011 1.21294 0.94643 0.83103 1.01175 1.44625 1.03178 1.07638 1.82174 1.17576 0.84627 0.91472 0.98375 1.20249 0.91864 0.97502 1.09448 1.20616 0.94966 0.94467 0.99513 1.15479 0.83995 0.93956 1.12144 1.25770 0.92708 0.93259 0.92970 1.81232 1.12221 1.07852 1.10434 1.20316 0.89979 0.98629 1.05290 1.17094 0.89549 0.85913 1.02216 1.44151 1.07779 1.01804 1.83326 1.21095 0.96044 0.82049 1.03113 1.20336 0.90034 0.84011 0.77865 1.90641 1.24099 1.77240 1.51587 1.46424 1.12184 1.05201 1.71456 1.19157 0.83586 0.86447 0.97877 1.21207 0.93465 0.90211 1.53523 0.91774 1.24948 0.94710 0.99743 0.94555 1.69964 1.01067 1.32517 1.48702 0.86398 0.78667 0.83479 0.78293 1.20407 1.20964 1.19676 0.90880 0.91804 0.91800 0.92112 0.92105 0.76400 0.85253 0.85622 0.85113 0.75498 0.89571 0.89566 0.77329 0.95370 0.95366 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.03 37.16 0.37 -0.55 16 2 C 0.12 0.75 5.62 -4.04 -0.02 0.72 16 3 N -0.74 -6.28 5.71 -58.45 -0.33 -6.61 16 4 C 0.19 1.77 6.67 -83.56 -0.56 1.22 16 5 C -0.17 -1.34 9.28 -39.48 -0.37 -1.70 16 6 C -0.07 -0.60 9.74 -39.17 -0.38 -0.98 16 7 C -0.05 -0.49 5.74 -106.81 -0.61 -1.10 16 8 C 0.27 3.10 15.32 -22.47 -0.34 2.76 16 9 N -0.44 -6.11 18.54 41.84 0.78 -5.33 16 10 C -0.12 -1.17 9.02 -39.00 -0.35 -1.52 16 11 C 0.16 1.68 6.67 -83.56 -0.56 1.12 16 12 N -0.73 -8.79 5.70 -59.67 -0.34 -9.13 16 13 C 0.11 1.30 5.39 -5.19 -0.03 1.27 16 14 C 0.49 8.71 7.90 -10.99 -0.09 8.62 16 15 O -0.56 -11.83 15.67 5.55 0.09 -11.74 16 16 N -0.70 -13.52 5.55 -61.47 -0.34 -13.86 16 17 C 0.25 6.27 5.43 -5.19 -0.03 6.25 16 18 C -0.55 -14.25 9.28 -34.44 -0.32 -14.57 16 19 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 22 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.34 7.94 -51.93 -0.41 -0.08 16 30 H 0.06 0.34 7.93 -51.93 -0.41 -0.08 16 31 H 0.40 3.62 6.62 -40.82 -0.27 3.35 16 32 H 0.13 0.78 6.70 -52.49 -0.35 0.43 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.13 1.22 6.72 -52.49 -0.35 0.87 16 35 H 0.41 5.23 5.60 -40.82 -0.23 5.00 16 36 H 0.09 0.91 7.95 -51.93 -0.41 0.50 16 37 H 0.09 0.91 7.95 -51.93 -0.41 0.50 16 38 H 0.39 6.36 8.32 -40.82 -0.34 6.02 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 357.27 15.07 5.38 5.38 Total: -1.00 -31.64 357.27 -7.70 -39.34 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.26 Total: 8.10 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -3.38 Total: 3.16 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.50 Total: -59.58 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.64 -7.70 -39.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776848607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.176 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds