Wall clock time and date at job start Tue Mar 31 2020 08:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 119.99720 * 2 1 4 4 H 1.48493 * 109.47254 * 269.99989 * 3 2 1 5 5 H 1.48500 * 109.46863 * 30.00196 * 3 2 1 6 6 H 1.48503 * 109.47161 * 149.99865 * 3 2 1 7 7 C 1.38813 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00293 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99987 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00084 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47246 * 154.99894 * 10 9 7 12 12 C 1.52995 * 109.47208 * 180.02562 * 11 10 9 13 13 C 1.53007 * 109.47175 * 299.99677 * 12 11 10 14 14 N 1.46494 * 109.47219 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00083 * 155.00192 * 14 13 12 16 16 O 1.21282 * 119.99686 * 0.02562 * 15 14 13 17 17 C 1.50692 * 120.00351 * 180.02562 * 15 14 13 18 18 H 1.09008 * 115.54779 * 325.66812 * 17 15 14 19 19 C 1.53069 * 117.53537 * 111.38291 * 17 15 14 20 20 C 1.53000 * 117.50104 * 180.02562 * 17 15 14 21 21 H 1.09002 * 117.49833 * 359.97323 * 20 17 15 22 22 C 1.52996 * 117.50107 * 144.97269 * 20 17 15 23 23 F 1.39894 * 109.47378 * 179.91200 * 22 20 17 24 24 F 1.39903 * 109.47222 * 299.91189 * 22 20 17 25 25 C 1.53000 * 109.46789 * 60.00066 * 13 12 11 26 26 C 1.52998 * 109.46870 * 274.99839 * 10 9 7 27 27 H 0.96997 * 120.00335 * 0.02562 * 1 2 3 28 28 H 0.97009 * 119.99770 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.47286 * 35.00120 * 10 9 7 30 30 H 1.09004 * 109.47360 * 59.99587 * 11 10 9 31 31 H 1.09007 * 109.47155 * 300.00185 * 11 10 9 32 32 H 1.09005 * 109.47277 * 180.02562 * 12 11 10 33 33 H 1.08997 * 109.47342 * 60.00215 * 12 11 10 34 34 H 1.08998 * 109.46916 * 300.00602 * 13 12 11 35 35 H 0.97000 * 120.00215 * 335.00874 * 14 13 12 36 36 H 1.09000 * 117.51640 * 359.97438 * 19 17 15 37 37 H 1.08999 * 117.49573 * 214.95399 * 19 17 15 38 38 H 1.08997 * 109.47260 * 59.90695 * 22 20 17 39 39 H 1.09002 * 109.47199 * 59.99848 * 25 13 12 40 40 H 1.08998 * 109.47126 * 180.02562 * 25 13 12 41 41 H 1.09002 * 109.47345 * 299.99747 * 26 10 9 42 42 H 1.08996 * 109.47187 * 59.99985 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 -0.0011 11 6 5.4996 -2.2580 -0.6100 12 6 6.2644 -3.5831 -0.6118 13 6 6.4101 -4.0898 0.8246 14 7 7.1418 -5.3589 0.8228 15 6 7.8241 -5.7449 1.9192 16 8 7.8319 -5.0417 2.9073 17 6 8.5774 -7.0501 1.9173 18 1 8.1205 -7.8557 1.3424 19 6 10.1063 -6.9848 1.9506 20 6 9.3317 -7.4323 3.1924 21 1 9.2834 -6.7395 4.0325 22 6 9.3869 -8.9158 3.5627 23 9 10.1137 -9.0739 4.7475 24 9 8.0869 -9.3996 3.7450 25 6 5.0227 -4.3025 1.4335 26 6 4.2578 -2.9768 1.4354 27 1 -0.4850 0.8400 -0.0004 28 1 3.8646 -0.3619 0.0004 29 1 3.5651 -3.2057 -0.5916 30 1 6.0467 -1.5230 -0.0196 31 1 5.3959 -1.8974 -1.6335 32 1 7.2530 -3.4315 -1.0452 33 1 5.7172 -4.3177 -1.2025 34 1 6.9573 -3.3552 1.4152 35 1 7.1354 -5.9214 0.0326 36 1 10.5678 -5.9975 1.9735 37 1 10.6547 -7.7474 1.3977 38 1 9.8726 -9.4725 2.7614 39 1 4.4753 -5.0371 0.8427 40 1 5.1264 -4.6631 2.4568 41 1 4.8049 -2.2419 2.0258 42 1 3.2694 -3.1283 1.8691 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026486721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:28 Heat of formation + Delta-G solvation = -119.073375 kcal Electronic energy + Delta-G solvation = -24378.310447 eV Core-core repulsion = 20415.254070 eV Total energy + Delta-G solvation = -3963.056378 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.155 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.30787 -47.33867 -40.43505 -38.51376 -36.89458 -35.00236 -33.08606 -31.02601 -30.50916 -28.38114 -27.37566 -24.66261 -23.09412 -22.47595 -21.99101 -20.88666 -20.46379 -19.62740 -18.33393 -17.61513 -17.46532 -17.31041 -16.74305 -16.14518 -15.26823 -15.08564 -14.71371 -14.29749 -14.23778 -13.91199 -13.79795 -13.70303 -13.42749 -13.27181 -12.95117 -12.68101 -12.66130 -12.20676 -12.01812 -11.78582 -11.47817 -11.26800 -11.23462 -11.04768 -10.90441 -10.88108 -10.68406 -10.27768 -10.21080 -9.95862 -9.84444 -9.56710 -9.08285 -8.88394 -7.25492 -5.75956 -3.11295 2.14412 2.75390 3.04979 3.37684 3.38488 3.41494 3.46319 3.72355 3.92482 4.07074 4.34071 4.56087 4.60184 4.65391 4.72828 4.81280 4.92764 5.01410 5.09252 5.31589 5.45249 5.49114 5.51267 5.52742 5.59935 5.73889 5.76886 5.90693 6.07671 6.15021 6.16141 6.33840 6.43330 6.50182 6.62241 6.88595 7.04181 7.32141 8.00723 8.02864 8.43373 9.22113 9.94833 10.14719 11.42489 Molecular weight = 302.15amu Principal moments of inertia in cm(-1) A = 0.034535 B = 0.002449 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.575549 B =11429.030777 C =11691.593099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.182 3.818 11 C -0.124 4.124 12 C -0.118 4.118 13 C 0.144 3.856 14 N -0.718 5.718 15 C 0.541 3.459 16 O -0.534 6.534 17 C -0.168 4.168 18 H 0.132 0.868 19 C -0.128 4.128 20 C -0.193 4.193 21 H 0.141 0.859 22 C 0.297 3.703 23 F -0.200 7.200 24 F -0.200 7.200 25 C -0.124 4.124 26 C -0.133 4.133 27 H 0.259 0.741 28 H 0.360 0.640 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.400 0.600 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.512 -18.449 0.262 29.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.392 5.392 10 C 0.072 3.928 11 C -0.163 4.163 12 C -0.157 4.157 13 C 0.041 3.959 14 N -0.368 5.368 15 C 0.327 3.673 16 O -0.411 6.411 17 C -0.189 4.189 18 H 0.150 0.850 19 C -0.165 4.165 20 C -0.212 4.212 21 H 0.159 0.841 22 C 0.243 3.757 23 F -0.181 7.181 24 F -0.182 7.182 25 C -0.164 4.164 26 C -0.173 4.173 27 H 0.069 0.931 28 H 0.193 0.807 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.233 0.767 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 23.228 -17.993 0.995 29.398 hybrid contribution 0.336 0.870 -0.167 0.947 sum 23.563 -17.123 0.828 29.139 Atomic orbital electron populations 1.69697 1.05113 1.25797 1.57673 1.24677 0.95234 0.97219 1.02132 0.86548 0.79258 0.85016 0.77707 1.21141 1.21807 1.20294 1.19077 0.80622 0.94662 1.42793 0.89234 1.42799 1.04005 1.02063 1.90294 1.20215 0.90202 0.89127 0.93216 1.21795 0.96905 0.95836 1.01774 1.21733 1.00513 0.98482 0.94922 1.21152 0.92788 0.84462 0.97523 1.46040 1.51326 1.23591 1.15853 1.19412 0.78796 0.85950 0.83187 1.90742 1.62411 1.54830 1.33104 1.22266 0.95784 0.98835 1.02030 0.85011 1.23147 0.91171 1.04521 0.97693 1.23370 1.06331 0.96185 0.95295 0.84131 1.21285 0.76064 0.93413 0.84933 1.93004 1.77482 1.96479 1.51141 1.93025 1.39731 1.89298 1.96112 1.21910 0.94557 0.99237 1.00674 1.22202 1.00053 0.94727 1.00367 0.93093 0.80701 0.92671 0.92096 0.91215 0.91779 0.91281 0.89473 0.76651 0.86896 0.86850 0.86975 0.92028 0.92197 0.92613 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.45 13.97 55.49 0.78 -28.67 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 22.18 27.74 -169.99 -4.71 17.47 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 7 C -0.24 -6.77 10.41 -15.06 -0.16 -6.93 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -17.50 4.93 -53.43 -0.26 -17.77 16 10 C 0.18 3.35 2.77 -67.93 -0.19 3.16 16 11 C -0.12 -1.80 5.39 -26.73 -0.14 -1.94 16 12 C -0.12 -1.29 5.39 -26.73 -0.14 -1.44 16 13 C 0.14 1.75 2.45 -67.93 -0.17 1.58 16 14 N -0.72 -6.81 5.08 -53.81 -0.27 -7.08 16 15 C 0.54 5.91 7.58 -10.99 -0.08 5.83 16 16 O -0.53 -8.25 15.92 5.56 0.09 -8.16 16 17 C -0.17 -1.17 5.87 -91.74 -0.54 -1.70 16 18 H 0.13 0.60 8.14 -51.92 -0.42 0.18 16 19 C -0.13 -0.62 9.89 -26.67 -0.26 -0.89 16 20 C -0.19 -1.42 5.40 -90.60 -0.49 -1.91 16 21 H 0.14 1.37 7.67 -51.93 -0.40 0.97 16 22 C 0.30 1.98 5.50 37.16 0.20 2.18 16 23 F -0.20 -1.77 17.34 2.25 0.04 -1.73 16 24 F -0.20 -1.88 17.29 2.25 0.04 -1.84 16 25 C -0.12 -1.77 5.50 -26.70 -0.15 -1.92 16 26 C -0.13 -2.33 5.51 -26.70 -0.15 -2.47 16 27 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 28 H 0.36 8.31 5.66 -40.82 -0.23 8.07 16 29 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 35 H 0.40 2.52 8.60 -40.82 -0.35 2.17 16 36 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.11 0.22 8.05 -51.93 -0.42 -0.20 16 38 H 0.11 0.31 7.90 -51.93 -0.41 -0.10 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 351.47 15.07 5.30 5.30 Total: -1.00 -34.63 351.47 -7.81 -42.44 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -6.44 Total: 6.51 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.36 Total: -6.45 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.24 Total: -53.53 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.16 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.08 Total: -3.57 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.63 -7.81 -42.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026486721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.629 kcal (2) G-P(sol) polarization free energy of solvation -34.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds