Wall clock time and date at job start Tue Mar 31 2020 08:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47239 * 299.99990 * 3 2 1 6 6 H 1.48501 * 109.46793 * 59.99571 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47131 * 35.00777 * 10 9 7 12 12 C 1.52998 * 109.47262 * 275.00203 * 10 9 7 13 13 C 1.52996 * 109.47019 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47270 * 59.99765 * 13 12 10 15 15 C 1.52998 * 109.47292 * 300.00068 * 14 13 12 16 16 C 1.52996 * 109.47048 * 60.00174 * 15 14 13 17 17 H 1.08994 * 109.47414 * 59.99906 * 16 15 14 18 18 N 1.46501 * 109.47264 * 180.02562 * 16 15 14 19 19 C 1.34774 * 119.99987 * 274.99912 * 18 16 15 20 20 O 1.21288 * 119.99785 * 359.97438 * 19 18 16 21 21 C 1.50696 * 120.00531 * 179.97438 * 19 18 16 22 22 C 1.53787 * 113.61166 * 279.13546 * 21 19 18 23 23 C 1.53954 * 87.01830 * 220.04457 * 22 21 19 24 24 F 1.39905 * 113.53712 * 270.81147 * 23 22 21 25 25 F 1.39895 * 113.74212 * 139.94877 * 23 22 21 26 26 C 1.53780 * 87.11299 * 25.36239 * 23 22 21 27 27 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 28 28 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 29 29 H 1.09002 * 109.46901 * 299.99917 * 12 10 9 30 30 H 1.09001 * 109.47093 * 60.00233 * 12 10 9 31 31 H 1.09007 * 109.47060 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.46968 * 299.99571 * 13 12 10 33 33 H 1.09007 * 109.46959 * 60.00323 * 14 13 12 34 34 H 1.09002 * 109.46987 * 180.02562 * 14 13 12 35 35 H 1.09001 * 109.47093 * 179.97438 * 15 14 13 36 36 H 1.08994 * 109.47090 * 299.99882 * 15 14 13 37 37 H 0.96997 * 120.00050 * 94.99754 * 18 16 15 38 38 H 1.08996 * 112.85039 * 50.32719 * 21 19 18 39 39 H 1.08997 * 113.61326 * 334.56802 * 22 21 19 40 40 H 1.09006 * 113.60913 * 105.46400 * 22 21 19 41 41 H 1.08999 * 113.61672 * 220.09107 * 26 23 22 42 42 H 1.08997 * 113.69131 * 89.19218 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9687 -3.5505 0.5901 12 6 2.4221 -4.0356 -1.4364 13 6 3.1865 -5.3609 -1.4364 14 6 2.3089 -6.4559 -0.8270 15 6 1.9449 -6.0771 0.6100 16 6 1.1804 -4.7519 0.6100 17 1 0.2698 -4.8577 0.0204 18 7 0.8324 -4.3888 1.9860 19 6 -0.2857 -4.8852 2.5516 20 8 -1.0039 -5.6321 1.9214 21 6 -0.6434 -4.5122 3.9672 22 6 0.1167 -5.3245 5.0290 23 6 -1.2022 -5.3708 5.8218 24 9 -1.3664 -4.2914 6.6967 25 9 -1.4507 -6.6057 6.4303 26 6 -1.9263 -5.1896 4.4773 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0039 29 1 1.5114 -4.1419 -2.0259 30 1 3.0470 -3.2552 -1.8707 31 1 3.4454 -5.6310 -2.4603 32 1 4.0972 -5.2550 -0.8469 33 1 1.3982 -6.5618 -1.4167 34 1 2.8537 -7.4000 -0.8266 35 1 1.3193 -6.8571 1.0440 36 1 2.8555 -5.9713 1.1995 37 1 1.4067 -3.7912 2.4899 38 1 -0.6191 -3.4364 4.1405 39 1 0.4488 -6.3010 4.6766 40 1 0.9067 -4.7617 5.5264 41 1 -2.7833 -4.5181 4.5299 42 1 -2.1545 -6.1284 3.9728 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085164609.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:26 Heat of formation + Delta-G solvation = -123.301921 kcal Electronic energy + Delta-G solvation = -25551.642986 eV Core-core repulsion = 21588.403245 eV Total energy + Delta-G solvation = -3963.239741 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.155 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.94495 -47.27696 -40.15196 -38.38556 -36.62495 -34.09328 -33.79157 -31.19461 -29.54362 -27.90228 -26.42686 -25.89996 -23.76802 -22.35512 -21.16590 -20.81539 -19.95791 -19.38681 -18.05183 -17.19541 -16.87840 -16.50682 -16.22348 -15.93627 -15.06834 -14.91179 -14.25648 -14.17864 -14.14264 -13.79412 -13.68827 -13.57011 -13.41803 -13.01525 -12.80898 -12.75663 -12.26798 -12.19572 -11.95887 -11.58907 -11.51399 -11.12723 -10.97352 -10.88780 -10.79890 -10.62560 -10.60311 -10.36559 -10.17948 -9.81960 -9.69941 -9.54823 -8.97374 -8.65447 -7.04156 -5.83478 -3.13364 2.75190 3.23300 3.37461 3.41515 3.43664 3.46003 3.63159 4.08609 4.20767 4.32844 4.50910 5.00127 5.03893 5.12194 5.16613 5.27599 5.28478 5.29460 5.39915 5.47600 5.49158 5.59217 5.67172 5.77031 5.84821 5.90932 5.93268 5.97161 6.07657 6.26804 6.41510 6.42956 6.45929 6.53981 6.80748 6.84789 7.03218 7.63157 7.82871 8.33727 8.47487 9.45783 10.01703 10.36868 11.38518 Molecular weight = 302.15amu Principal moments of inertia in cm(-1) A = 0.011557 B = 0.004714 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.136418 B = 5938.926652 C = 7846.625779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.722 5.722 10 C 0.173 3.827 11 H 0.051 0.949 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.140 3.860 17 H 0.084 0.916 18 N -0.701 5.701 19 C 0.530 3.470 20 O -0.546 6.546 21 C -0.133 4.133 22 C -0.148 4.148 23 C 0.254 3.746 24 F -0.178 7.178 25 F -0.191 7.191 26 C -0.141 4.141 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.404 0.596 38 H 0.129 0.871 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.417 -12.976 7.587 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.363 5.363 10 C 0.062 3.938 11 H 0.069 0.931 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.163 4.163 16 C 0.034 3.966 17 H 0.102 0.898 18 N -0.350 5.350 19 C 0.315 3.685 20 O -0.424 6.424 21 C -0.154 4.154 22 C -0.186 4.186 23 C 0.217 3.783 24 F -0.159 7.159 25 F -0.171 7.171 26 C -0.179 4.179 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.239 0.761 38 H 0.147 0.853 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.015 -13.337 7.189 15.285 hybrid contribution 0.359 1.428 0.354 1.514 sum 2.374 -11.909 7.544 14.296 Atomic orbital electron populations 1.69677 1.05102 1.25590 1.57344 1.24735 0.95438 0.97635 1.02845 0.86168 0.78782 0.84292 0.77214 1.20584 1.21896 1.21908 1.19245 0.90943 0.83980 1.43057 0.91138 1.42430 1.05806 0.99485 1.88544 1.20467 0.93905 0.85769 0.93622 0.93132 1.22224 0.99969 0.95543 0.99706 1.21582 0.98513 0.95668 1.00000 1.21473 0.99929 0.98038 0.95762 1.21867 0.99962 0.97194 0.97230 1.21332 0.99087 0.94046 0.82088 0.89754 1.45882 1.24976 1.48805 1.15318 1.19888 0.80897 0.80290 0.87464 1.90679 1.50825 1.36931 1.63957 1.22561 0.97280 1.02503 0.93061 1.24037 0.96287 1.03318 0.94994 1.22079 0.99800 0.71812 0.84583 1.93031 1.96374 1.54472 1.72040 1.93007 1.95286 1.42788 1.86047 1.23968 0.98134 1.04636 0.91153 0.93518 0.78148 0.92460 0.91590 0.92673 0.92384 0.91959 0.92380 0.91980 0.92023 0.76089 0.85267 0.86684 0.87962 0.88281 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.07 13.06 55.49 0.72 -26.35 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 3 Si 0.90 21.54 29.55 -169.99 -5.02 16.51 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.72 -16.64 4.95 -53.42 -0.26 -16.91 16 10 C 0.17 3.10 2.29 -67.92 -0.16 2.95 16 11 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 12 C -0.13 -2.23 5.50 -26.73 -0.15 -2.37 16 13 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 14 C -0.11 -1.41 5.92 -26.73 -0.16 -1.57 16 15 C -0.12 -1.63 5.49 -26.73 -0.15 -1.78 16 16 C 0.14 2.23 1.98 -67.93 -0.13 2.09 16 17 H 0.08 1.57 7.58 -51.93 -0.39 1.17 16 18 N -0.70 -10.45 4.91 -53.81 -0.26 -10.71 16 19 C 0.53 7.95 7.32 -10.99 -0.08 7.87 16 20 O -0.55 -9.87 15.57 5.55 0.09 -9.78 16 21 C -0.13 -1.56 4.12 -90.96 -0.37 -1.94 16 22 C -0.15 -1.42 7.43 -25.82 -0.19 -1.62 16 23 C 0.25 2.81 3.27 -25.83 -0.08 2.72 16 24 F -0.18 -2.18 17.38 2.25 0.04 -2.14 16 25 F -0.19 -2.31 17.41 2.25 0.04 -2.27 16 26 C -0.14 -1.59 7.19 -25.92 -0.19 -1.77 16 27 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.38 9.83 7.80 -40.82 -0.32 9.52 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.40 5.67 8.60 -40.82 -0.35 5.32 16 38 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.11 1.04 8.09 -51.93 -0.42 0.62 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.12 1.47 7.45 -51.93 -0.39 1.08 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -29.90 349.33 -7.95 -37.85 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -6.49 Total: 12.42 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -2.06 Total: -3.89 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.20 Total: -53.97 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.08 Total: -4.41 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.90 -7.95 -37.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085164609.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.455 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds