Wall clock time and date at job start Tue Mar 31 2020 08:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46893 * 111.00367 * 2 1 4 4 C 1.46900 * 110.99786 * 123.95505 * 2 1 3 5 5 C 1.53003 * 109.47287 * 66.04469 * 4 2 1 6 6 N 1.46500 * 109.47217 * 180.02562 * 5 4 2 7 7 C 1.34745 * 125.87760 * 124.99987 * 6 5 4 8 8 C 1.36540 * 107.60052 * 179.97438 * 7 6 5 9 9 C 1.48316 * 126.24095 * 179.97438 * 8 7 6 10 10 C 1.39441 * 119.65757 * 179.97438 * 9 8 7 11 11 C 1.38183 * 119.14770 * 179.97438 * 10 9 8 12 12 C 1.39453 * 118.46472 * 0.02562 * 11 10 9 13 13 O 1.35740 * 120.38055 * 180.02562 * 12 11 10 14 14 C 1.34811 * 117.00493 * 354.51716 * 13 12 11 15 15 H 1.07997 * 119.99563 * 5.05858 * 14 13 12 16 16 C 1.38639 * 120.00153 * 185.05455 * 14 13 12 17 17 N 1.31572 * 119.99860 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00088 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47062 * 60.00348 * 18 16 14 20 20 H 1.48500 * 109.47097 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47214 * 300.00284 * 18 16 14 22 22 C 1.38864 * 119.23147 * 0.02562 * 12 11 10 23 23 N 1.31733 * 120.79124 * 359.97438 * 22 12 11 24 24 C 1.40921 * 107.51952 * 0.24156 * 8 7 6 25 25 N 1.30639 * 108.07986 * 359.59014 * 24 8 7 26 26 H 1.08999 * 109.47397 * 296.04829 * 1 2 3 27 27 H 1.09001 * 109.47138 * 56.04152 * 1 2 3 28 28 H 1.08995 * 109.47410 * 176.04537 * 1 2 3 29 29 H 1.09002 * 109.47558 * 183.95254 * 3 2 1 30 30 H 1.09002 * 109.46940 * 303.95589 * 3 2 1 31 31 H 1.09006 * 109.47037 * 63.95237 * 3 2 1 32 32 H 1.08997 * 109.47622 * 306.04465 * 4 2 1 33 33 H 1.08998 * 109.46977 * 186.04284 * 4 2 1 34 34 H 1.09005 * 109.47070 * 59.99507 * 5 4 2 35 35 H 1.09007 * 109.46906 * 299.99982 * 5 4 2 36 36 H 1.08002 * 126.19946 * 359.95799 * 7 6 5 37 37 H 1.08004 * 120.42251 * 0.03098 * 10 9 8 38 38 H 1.08004 * 120.76987 * 180.02562 * 11 10 9 39 39 H 0.96994 * 119.99708 * 179.97438 * 17 16 14 40 40 H 1.08007 * 119.60168 * 180.26036 * 22 12 11 41 41 H 1.08004 * 125.96025 * 179.71704 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6313 -2.2427 0.9703 6 7 2.1558 -3.0065 2.1052 7 6 1.4379 -3.8061 2.9181 8 6 2.2946 -4.3304 3.8431 9 6 1.9379 -5.2657 4.9376 10 6 2.9283 -5.7180 5.8088 11 6 2.5842 -6.5888 6.8251 12 6 1.2516 -6.9835 6.9394 13 8 0.8705 -7.8371 7.9236 14 6 1.8467 -8.3596 8.6927 15 1 2.8678 -8.0319 8.5656 16 6 1.5396 -9.3175 9.6467 17 7 0.2956 -9.7170 9.8012 18 14 2.8924 -10.0420 10.7119 19 1 3.5445 -8.9577 11.4892 20 1 2.3075 -11.0380 11.6453 21 1 3.9005 -10.7067 9.8476 22 6 0.3191 -6.4933 6.0347 23 7 0.6801 -5.6641 5.0768 24 6 3.5782 -3.8160 3.5721 25 7 3.4892 -3.0317 2.5312 26 1 -0.3634 0.4513 0.9233 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0828 1.3431 -0.0708 30 1 1.5898 1.9162 -0.8524 31 1 1.7044 1.8723 0.9233 32 1 1.5611 -0.3873 2.0628 33 1 3.0796 -0.6612 1.1756 34 1 2.0656 -2.6214 0.0451 35 1 0.5470 -2.3475 0.9323 36 1 0.3772 -3.9974 2.8505 37 1 3.9510 -5.3912 5.6913 38 1 3.3301 -6.9552 7.5149 39 1 0.0809 -10.3875 10.4684 40 1 -0.7153 -6.7917 6.1203 41 1 4.4789 -4.0338 4.1269 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206340310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:28 Heat of formation + Delta-G solvation = 94.713827 kcal Electronic energy + Delta-G solvation = -22854.418062 eV Core-core repulsion = 19351.321379 eV Total energy + Delta-G solvation = -3503.096683 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.07781 -39.38721 -38.03350 -37.08442 -33.67004 -32.48049 -31.33954 -30.90194 -29.59551 -28.05518 -27.63148 -25.59573 -24.68280 -22.88960 -22.42939 -21.75117 -20.35308 -20.03679 -18.07272 -17.49908 -16.89743 -16.08825 -15.80248 -15.35006 -15.24330 -14.93240 -14.60777 -14.53041 -14.03922 -13.88795 -13.67437 -13.47055 -12.97520 -12.83865 -12.55358 -12.50285 -12.34131 -12.18932 -12.14003 -11.90783 -11.78315 -11.55545 -11.23552 -11.08550 -10.59618 -10.52328 -9.77209 -9.34493 -9.16858 -8.98181 -8.86772 -8.76860 -8.54546 -7.02395 -6.56712 -4.13721 1.69038 2.08297 2.20248 2.43860 3.05540 3.07669 3.11540 3.26766 3.57432 3.87374 4.27474 4.60829 4.69483 4.71330 4.84266 4.91543 4.94011 5.02166 5.02766 5.09684 5.13126 5.17785 5.31185 5.39310 5.45536 5.47237 5.52999 5.59969 5.70852 5.83313 5.91986 6.18032 6.32742 6.46082 6.50494 6.56880 6.74739 6.87023 7.03075 7.11627 7.22640 7.50987 7.80071 7.85836 8.79313 8.88127 9.53641 10.59996 Molecular weight = 302.15amu Principal moments of inertia in cm(-1) A = 0.043058 B = 0.002240 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.136129 B =12495.158507 C =12942.457619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.546 5.546 3 C 0.026 3.974 4 C 0.044 3.956 5 C 0.141 3.859 6 N -0.377 5.377 7 C 0.075 3.925 8 C -0.160 4.160 9 C 0.093 3.907 10 C -0.109 4.109 11 C -0.196 4.196 12 C 0.101 3.899 13 O -0.165 6.165 14 C -0.393 4.393 15 H 0.093 0.907 16 C 0.041 3.959 17 N -0.856 5.856 18 Si 0.943 3.057 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.269 1.269 22 C 0.034 3.966 23 N -0.445 5.445 24 C 0.060 3.940 25 N -0.301 5.301 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.027 0.973 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.178 0.822 37 H 0.119 0.881 38 H 0.137 0.863 39 H 0.273 0.727 40 H 0.151 0.849 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.791 15.942 -15.436 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.270 5.270 3 C -0.122 4.122 4 C -0.085 4.085 5 C 0.019 3.981 6 N -0.160 5.160 7 C -0.072 4.072 8 C -0.172 4.172 9 C -0.043 4.043 10 C -0.129 4.129 11 C -0.222 4.222 12 C 0.044 3.956 13 O -0.066 6.066 14 C -0.470 4.470 15 H 0.110 0.890 16 C -0.164 4.164 17 N -0.489 5.489 18 Si 0.767 3.233 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.194 1.194 22 C -0.128 4.128 23 N -0.155 5.155 24 C -0.128 4.128 25 N -0.122 5.122 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.195 0.805 37 H 0.137 0.863 38 H 0.154 0.846 39 H 0.083 0.917 40 H 0.168 0.832 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.542 16.602 -17.126 23.987 hybrid contribution 0.608 -0.863 2.534 2.746 sum 3.150 15.739 -14.591 21.692 Atomic orbital electron populations 1.22520 0.87194 1.02600 1.00938 1.61909 1.08180 1.14349 1.42574 1.22379 1.01034 0.88141 1.00681 1.22367 1.01953 0.92381 0.91773 1.21574 0.99074 0.90502 0.86925 1.48299 1.05905 1.36753 1.25045 1.22545 0.98673 0.94088 0.91868 1.18540 0.92680 1.05788 1.00173 1.18342 0.89210 1.00393 0.96365 1.21552 0.99150 0.97253 0.94930 1.21466 0.96826 1.02459 1.01452 1.20493 0.93258 0.92023 0.89857 1.83966 1.35343 1.50610 1.36693 1.21306 0.88885 1.21669 1.15106 0.89005 1.25331 0.97816 0.95878 0.97400 1.70029 1.17561 1.28644 1.32698 0.85744 0.79383 0.78946 0.79192 1.19376 1.20153 1.19366 1.21687 0.99220 0.99291 0.92590 1.67335 1.18400 1.10196 1.19562 1.23903 0.98093 0.95717 0.95046 1.77115 0.96099 1.23519 1.15473 0.95265 0.91011 0.91011 0.91062 0.91054 0.95451 0.94086 0.89135 0.89043 0.88783 0.80488 0.86343 0.84577 0.91704 0.83197 0.80008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.32 60.06 0.56 0.66 16 2 N -0.55 -4.26 5.02 -251.27 -1.26 -5.52 16 3 C 0.03 0.17 9.57 60.06 0.57 0.74 16 4 C 0.04 0.40 5.14 -3.82 -0.02 0.38 16 5 C 0.14 1.31 6.42 -4.04 -0.03 1.29 16 6 N -0.38 -4.84 3.67 -61.09 -0.22 -5.06 16 7 C 0.07 1.06 11.15 -16.89 -0.19 0.87 16 8 C -0.16 -2.58 6.06 -105.35 -0.64 -3.21 16 9 C 0.09 1.75 6.76 -82.91 -0.56 1.19 16 10 C -0.11 -1.99 9.61 -39.15 -0.38 -2.36 16 11 C -0.20 -4.11 9.25 -39.15 -0.36 -4.48 16 12 C 0.10 2.36 6.67 -38.90 -0.26 2.11 16 13 O -0.17 -4.52 9.76 0.13 0.00 -4.52 16 14 C -0.39 -10.56 9.50 30.88 0.29 -10.27 16 15 H 0.09 2.26 5.25 -52.49 -0.28 1.98 16 16 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 17 N -0.86 -24.23 13.67 55.48 0.76 -23.48 16 18 Si 0.94 19.77 29.55 -169.99 -5.02 14.74 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 C 0.03 0.74 11.14 -17.36 -0.19 0.55 16 23 N -0.45 -8.94 10.05 -9.61 -0.10 -9.03 16 24 C 0.06 0.86 11.41 -17.04 -0.19 0.66 16 25 N -0.30 -4.33 12.37 30.81 0.38 -3.95 16 26 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 28 H 0.07 0.41 6.47 -51.93 -0.34 0.07 16 29 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 30 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 31 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.04 0.41 8.12 -51.93 -0.42 -0.02 16 33 H 0.09 0.92 8.06 -51.93 -0.42 0.50 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.69 6.48 -51.92 -0.34 0.36 16 36 H 0.18 2.23 8.06 -52.49 -0.42 1.80 16 37 H 0.12 1.75 7.02 -52.48 -0.37 1.38 16 38 H 0.14 2.77 5.75 -52.48 -0.30 2.47 16 39 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.15 3.00 8.06 -52.48 -0.42 2.58 16 41 H 0.18 2.12 7.32 -52.48 -0.38 1.73 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -31.30 350.58 -7.02 -38.32 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.36 Total: 4.09 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -1.49 Total: -10.88 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.44 Total: -47.04 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: 0.00 Total: -4.52 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.30 -7.02 -38.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206340310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.038 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds