Wall clock time and date at job start Tue Mar 31 2020 08:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48497 * 109.47122 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46953 * 300.00043 * 3 2 1 6 6 H 1.48503 * 109.46780 * 59.99627 * 3 2 1 7 7 C 1.38809 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00251 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00384 * 174.38012 * 9 7 2 11 11 C 1.52991 * 110.01936 * 61.54421 * 10 9 7 12 12 N 1.46507 * 109.47139 * 55.27887 * 11 10 9 13 13 C 1.34771 * 120.00101 * 175.53042 * 12 11 10 14 14 O 1.21284 * 120.00330 * 359.97438 * 13 12 11 15 15 C 1.50694 * 119.99993 * 179.97438 * 13 12 11 16 16 H 1.09002 * 115.55250 * 325.57925 * 15 13 12 17 17 C 1.53005 * 117.50396 * 111.24576 * 15 13 12 18 18 C 1.53005 * 117.52092 * 179.87914 * 15 13 12 19 19 H 1.08991 * 117.49467 * 0.02562 * 18 15 13 20 20 C 1.52999 * 117.50043 * 145.02575 * 18 15 13 21 21 F 1.39890 * 109.47336 * 179.97438 * 20 18 15 22 22 F 1.39902 * 109.47454 * 300.00372 * 20 18 15 23 23 C 1.54270 * 110.03480 * 182.94188 * 10 9 7 24 24 C 1.54964 * 104.15848 * 95.75069 * 23 10 9 25 25 C 1.54882 * 102.78040 * 37.88857 * 24 23 10 26 26 C 1.53880 * 110.02871 * 300.15796 * 10 9 7 27 27 H 0.96993 * 120.00271 * 0.02562 * 1 2 3 28 28 H 0.97006 * 119.99622 * 354.37282 * 9 7 2 29 29 H 1.08998 * 109.47642 * 295.27514 * 11 10 9 30 30 H 1.09006 * 109.47587 * 175.27690 * 11 10 9 31 31 H 0.97002 * 119.99531 * 355.52539 * 12 11 10 32 32 H 1.08995 * 117.50220 * 215.00185 * 17 15 13 33 33 H 1.09003 * 117.49521 * 0.02562 * 17 15 13 34 34 H 1.09010 * 109.46844 * 60.00181 * 20 18 15 35 35 H 1.08999 * 110.48060 * 214.39739 * 23 10 9 36 36 H 1.08996 * 110.48608 * 337.04097 * 23 10 9 37 37 H 1.09002 * 110.71819 * 279.57386 * 24 23 10 38 38 H 1.09004 * 110.75910 * 156.22572 * 24 23 10 39 39 H 1.08999 * 110.49061 * 203.40463 * 25 24 23 40 40 H 1.09003 * 110.48586 * 80.76056 * 25 24 23 41 41 H 1.08999 * 110.03018 * 359.94736 * 26 10 9 42 42 H 1.08996 * 110.03476 * 121.38620 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0530 -3.6537 -0.1231 11 6 3.0114 -3.8245 1.0570 12 7 2.2646 -3.7142 2.3126 13 6 2.8891 -3.9220 3.4887 14 8 4.0693 -4.2007 3.5077 15 6 2.1210 -3.8080 4.7802 16 1 1.3357 -3.0522 4.7950 17 6 1.8794 -5.0932 5.5744 18 6 2.8854 -4.0581 6.0818 19 1 3.9442 -4.3047 6.0041 20 6 2.4891 -3.2281 7.3045 21 9 3.2885 -3.5910 8.3935 22 9 2.6703 -1.8694 7.0245 23 6 1.0585 -4.8321 -0.1712 24 6 0.8694 -5.1070 -1.6845 25 6 2.2917 -4.8805 -2.2543 26 6 2.8366 -3.6841 -1.4471 27 1 -0.4850 0.8400 -0.0004 28 1 0.3591 -2.3901 0.0825 29 1 3.7759 -3.0484 1.0197 30 1 3.4856 -4.8044 1.0013 31 1 1.3206 -3.4916 2.2974 32 1 0.9353 -5.1829 6.1116 33 1 2.2764 -6.0213 5.1628 34 1 1.4421 -3.4129 7.5452 35 1 1.4790 -5.7065 0.3255 36 1 0.1108 -4.5505 0.2875 37 1 0.1621 -4.4007 -2.1193 38 1 0.5446 -6.1338 -1.8531 39 1 2.2431 -4.6346 -3.3150 40 1 2.9117 -5.7627 -2.0942 41 1 2.6749 -2.7575 -1.9980 42 1 3.8996 -3.8206 -1.2488 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753662169.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:52 Heat of formation + Delta-G solvation = -117.571472 kcal Electronic energy + Delta-G solvation = -25288.379964 eV Core-core repulsion = 21325.388713 eV Total energy + Delta-G solvation = -3962.991250 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.155 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.00334 -47.03251 -39.84140 -38.44744 -36.55501 -34.12374 -33.33033 -30.69924 -28.34493 -28.26731 -27.22569 -25.02993 -23.56536 -22.79438 -21.59385 -20.43952 -19.75072 -18.65253 -17.85123 -17.25001 -17.07963 -16.93952 -16.30712 -15.75778 -15.12875 -14.78224 -14.64961 -14.18419 -13.93637 -13.86521 -13.53877 -13.39347 -13.27246 -13.07575 -12.73735 -12.58083 -12.29415 -11.98213 -11.58494 -11.13809 -11.06446 -10.89877 -10.84245 -10.72602 -10.66868 -10.60477 -10.51833 -10.37338 -10.10558 -9.86340 -9.69356 -9.56205 -8.96441 -8.51146 -7.05974 -5.84851 -3.14296 2.63237 3.30463 3.39643 3.44872 3.47789 3.48470 3.79467 4.09317 4.30178 4.49551 4.54278 4.70488 4.99317 5.05970 5.07441 5.10324 5.20205 5.22776 5.37920 5.53668 5.63366 5.69474 5.75171 5.85656 5.92849 5.94912 6.06657 6.11747 6.22014 6.29258 6.39353 6.54103 6.58443 6.69983 6.79889 6.94602 7.09823 7.69497 7.98476 8.33935 8.60094 9.45952 9.99205 10.34790 11.37107 Molecular weight = 302.15amu Principal moments of inertia in cm(-1) A = 0.011725 B = 0.004644 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.436947 B = 6027.380292 C = 7724.745297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.070 0.930 9 N -0.712 5.712 10 C 0.188 3.812 11 C 0.118 3.882 12 N -0.692 5.692 13 C 0.538 3.462 14 O -0.555 6.555 15 C -0.162 4.162 16 H 0.133 0.867 17 C -0.130 4.130 18 C -0.194 4.194 19 H 0.139 0.861 20 C 0.296 3.704 21 F -0.203 7.203 22 F -0.199 7.199 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.121 4.121 26 C -0.130 4.130 27 H 0.254 0.746 28 H 0.384 0.616 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.405 0.595 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 -12.477 7.834 14.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.732 3.268 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.365 4.365 8 H 0.088 0.912 9 N -0.354 5.354 10 C 0.096 3.904 11 C -0.008 4.008 12 N -0.341 5.341 13 C 0.323 3.677 14 O -0.435 6.435 15 C -0.184 4.184 16 H 0.150 0.850 17 C -0.167 4.167 18 C -0.213 4.213 19 H 0.156 0.844 20 C 0.242 3.758 21 F -0.184 7.184 22 F -0.180 7.180 23 C -0.160 4.160 24 C -0.157 4.157 25 C -0.158 4.158 26 C -0.170 4.170 27 H 0.064 0.936 28 H 0.218 0.782 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.241 0.759 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.657 -12.479 7.813 14.737 hybrid contribution -0.147 1.418 0.021 1.425 sum 0.510 -11.061 7.834 13.564 Atomic orbital electron populations 1.69654 1.05026 1.25583 1.57604 1.24696 0.95414 0.97547 1.02734 0.86218 0.79036 0.84417 0.77160 1.20551 1.21890 1.21917 1.19138 0.91045 0.83780 1.42508 0.91207 1.42553 1.06048 0.99476 1.87283 1.20453 0.91028 0.87334 0.91568 1.21981 0.95281 1.00019 0.83512 1.45671 1.14310 1.68930 1.05185 1.19323 0.86895 0.77189 0.84323 1.90667 1.15730 1.49596 1.87466 1.22272 1.02829 1.02586 0.90674 0.84953 1.23092 0.99640 0.93236 1.00778 1.23310 1.01766 1.03137 0.93112 0.84350 1.21298 0.94598 0.76814 0.83049 1.92982 1.77278 1.91514 1.56635 1.93034 1.96701 1.34381 1.93916 1.22586 0.99360 0.97536 0.96522 1.22427 0.97336 1.00183 0.95737 1.22307 0.96242 0.98127 0.99157 1.22663 0.98468 0.98889 0.96984 0.93581 0.78153 0.91851 0.92668 0.75909 0.87077 0.87113 0.87037 0.91858 0.91535 0.91249 0.92610 0.92428 0.92604 0.89888 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.33 13.07 55.49 0.73 -25.61 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.90 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.23 -5.93 8.52 -15.06 -0.13 -6.06 16 8 H 0.07 1.81 7.27 -52.49 -0.38 1.42 16 9 N -0.71 -15.52 4.53 -46.20 -0.21 -15.73 16 10 C 0.19 3.31 0.68 -130.70 -0.09 3.22 16 11 C 0.12 2.10 4.04 -4.04 -0.02 2.09 16 12 N -0.69 -11.52 5.23 -60.29 -0.32 -11.83 16 13 C 0.54 8.95 7.61 -10.99 -0.08 8.87 16 14 O -0.56 -11.09 16.26 5.55 0.09 -10.99 16 15 C -0.16 -2.03 5.86 -91.77 -0.54 -2.56 16 16 H 0.13 1.51 8.14 -51.93 -0.42 1.09 16 17 C -0.13 -1.17 9.88 -26.72 -0.26 -1.43 16 18 C -0.19 -2.23 5.41 -90.61 -0.49 -2.72 16 19 H 0.14 1.86 7.67 -51.93 -0.40 1.46 16 20 C 0.30 3.12 5.50 37.16 0.20 3.33 16 21 F -0.20 -2.41 17.34 2.25 0.04 -2.37 16 22 F -0.20 -2.75 17.29 2.25 0.04 -2.71 16 23 C -0.12 -1.79 5.72 -25.03 -0.14 -1.93 16 24 C -0.12 -1.66 6.91 -24.70 -0.17 -1.83 16 25 C -0.12 -1.70 6.83 -25.07 -0.17 -1.88 16 26 C -0.13 -2.22 5.93 -25.61 -0.15 -2.37 16 27 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.38 8.95 7.44 -40.82 -0.30 8.65 16 29 H 0.06 1.31 7.46 -51.93 -0.39 0.92 16 30 H 0.06 0.93 8.05 -51.93 -0.42 0.52 16 31 H 0.41 6.48 7.99 -40.82 -0.33 6.15 16 32 H 0.11 0.66 8.05 -51.93 -0.42 0.25 16 33 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.11 0.75 7.90 -51.92 -0.41 0.34 16 35 H 0.06 0.85 7.79 -51.93 -0.40 0.44 16 36 H 0.07 0.98 7.72 -51.93 -0.40 0.58 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.65 7.36 -51.93 -0.38 1.27 16 42 H 0.05 0.84 7.67 -51.93 -0.40 0.44 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -30.41 352.51 -7.78 -38.19 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -6.30 Total: 12.38 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -2.14 Total: -3.60 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.20 Total: -53.17 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.08 Total: -5.07 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.41 -7.78 -38.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753662169.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.379 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds