Wall clock time and date at job start Tue Mar 31 2020 07:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99911 * 2 1 4 4 H 1.48507 * 109.46742 * 239.99819 * 3 2 1 5 5 H 1.48494 * 109.47368 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47425 * 119.99973 * 3 2 1 7 7 C 1.37872 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00056 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47457 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47311 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00119 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00227 * 179.97438 * 11 10 9 14 14 C 1.47607 * 118.64226 * 355.86878 * 13 11 10 15 15 C 1.53948 * 112.14093 * 137.86633 * 14 13 11 16 16 C 1.50884 * 110.09409 * 319.43481 * 15 14 13 17 17 C 1.52572 * 109.37428 * 91.88033 * 16 15 14 18 18 C 1.47012 * 114.32129 * 274.99782 * 17 16 15 19 19 C 1.44581 * 118.64847 * 175.84274 * 13 11 10 20 20 H 1.08996 * 109.45186 * 150.68428 * 19 13 11 21 21 C 1.50706 * 109.44449 * 30.74305 * 19 13 11 22 22 C 1.38649 * 120.78631 * 244.45332 * 21 19 13 23 23 C 1.38202 * 119.16182 * 179.80004 * 22 21 19 24 24 N 1.31873 * 120.76092 * 0.48673 * 23 22 21 25 25 C 1.31865 * 121.72934 * 359.73960 * 24 23 22 26 26 C 1.38207 * 120.76175 * 0.02562 * 25 24 23 27 27 H 0.97004 * 119.99903 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47099 * 60.00065 * 9 7 2 29 29 H 1.09004 * 109.47471 * 300.00347 * 9 7 2 30 30 H 1.09002 * 109.47113 * 60.00717 * 10 9 7 31 31 H 1.08995 * 109.47407 * 300.00489 * 10 9 7 32 32 H 1.08998 * 108.94690 * 17.17971 * 14 13 11 33 33 H 1.09003 * 108.94486 * 258.55088 * 14 13 11 34 34 H 1.09001 * 109.36840 * 199.24074 * 15 14 13 35 35 H 1.08999 * 109.26115 * 79.55768 * 15 14 13 36 36 H 1.08993 * 109.48876 * 211.85686 * 16 15 14 37 37 H 1.09000 * 109.48969 * 331.90738 * 16 15 14 38 38 H 1.09001 * 108.51217 * 36.24667 * 17 16 15 39 39 H 1.08997 * 108.50722 * 153.73803 * 17 16 15 40 40 H 1.08995 * 109.32534 * 302.52154 * 18 17 16 41 41 H 1.09000 * 109.30612 * 183.05921 * 18 17 16 42 42 H 1.08000 * 120.42218 * 359.97438 * 22 21 19 43 43 H 1.08001 * 119.62201 * 180.24869 * 23 22 21 44 44 H 1.08004 * 119.62156 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.41600 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4917 -4.9671 0.0012 12 8 0.2789 -4.9672 0.0011 13 7 2.1656 -6.1343 0.0008 14 6 3.6383 -6.1011 -0.0936 15 6 4.3037 -7.1100 0.8599 16 6 3.5855 -7.1207 2.1868 17 6 2.4984 -8.1910 2.1653 18 6 1.2237 -7.7478 1.5821 19 6 1.4163 -7.3674 0.0934 20 1 1.9605 -8.1620 -0.4169 21 6 0.0685 -7.1853 -0.5558 22 6 -1.0962 -7.2663 0.1920 23 6 -2.3141 -7.0898 -0.4370 24 7 -2.3761 -6.8566 -1.7334 25 6 -1.2896 -6.7775 -2.4765 26 6 -0.0366 -6.9386 -1.9161 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 2.8718 -3.6043 0.8906 31 1 2.8719 -3.6043 -0.8894 32 1 3.9862 -5.0981 0.1534 33 1 3.9326 -6.3341 -1.1170 34 1 5.3452 -6.8282 1.0149 35 1 4.2605 -8.1053 0.4175 36 1 4.2963 -7.3402 2.9833 37 1 3.1319 -6.1452 2.3627 38 1 2.8633 -9.0434 1.5923 39 1 2.3155 -8.5190 3.1885 40 1 0.8578 -6.8806 2.1317 41 1 0.4936 -8.5536 1.6570 42 1 -1.0522 -7.4621 1.2532 43 1 -3.2258 -7.1474 0.1392 44 1 -1.3800 -6.5846 -3.5354 45 1 0.8495 -6.8731 -2.5301 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292230708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:18 Heat of formation + Delta-G solvation = -2.693119 kcal Electronic energy + Delta-G solvation = -25714.245969 eV Core-core repulsion = 22310.465748 eV Total energy + Delta-G solvation = -3403.780221 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.92844 -39.11082 -37.42546 -34.34920 -33.84942 -33.29414 -31.12791 -30.77723 -30.72953 -27.11669 -26.07541 -25.14457 -23.35838 -22.38663 -22.11553 -20.74889 -20.35860 -18.33481 -17.25870 -16.46490 -16.21306 -15.94551 -15.59124 -15.42792 -15.06165 -14.69470 -14.43736 -14.22783 -13.77632 -13.52012 -13.37022 -13.28500 -12.94633 -12.59096 -12.52342 -12.14418 -11.97573 -11.79800 -11.29995 -11.22504 -11.02989 -10.92317 -10.83053 -10.78042 -10.60083 -10.54361 -10.03499 -9.94837 -9.51093 -9.14821 -9.11456 -8.74898 -8.46643 -8.32480 -8.27890 -5.96084 -4.00991 1.54341 1.61719 3.17022 3.25609 3.33478 3.38627 3.40077 4.19868 4.42880 4.47434 4.51878 4.67444 4.75520 4.82031 4.93560 4.97387 5.15415 5.22666 5.34329 5.38640 5.40299 5.48916 5.49619 5.54185 5.63011 5.71330 5.77761 5.92862 5.95639 5.97104 6.02001 6.08545 6.08687 6.16284 6.19525 6.25924 6.32818 6.59643 6.79057 6.90280 7.07492 7.65781 7.73132 7.85332 8.06527 8.35746 8.37844 8.72954 9.07260 9.62644 11.14646 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.004970 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.147670 B = 5632.813629 C = 7183.472540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.040 3.960 10 C -0.128 4.128 11 C 0.504 3.496 12 O -0.507 6.507 13 N -0.614 5.614 14 C 0.108 3.892 15 C -0.131 4.131 16 C -0.118 4.118 17 C -0.115 4.115 18 C -0.132 4.132 19 C 0.189 3.811 20 H 0.088 0.912 21 C 0.002 3.998 22 C -0.154 4.154 23 C 0.100 3.900 24 N -0.495 5.495 25 C 0.103 3.897 26 C -0.170 4.170 27 H 0.261 0.739 28 H 0.022 0.978 29 H 0.021 0.979 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.128 0.872 43 H 0.147 0.853 44 H 0.146 0.854 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.153 -20.108 1.511 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.567 4.567 8 H 0.072 0.928 9 C 0.003 3.997 10 C -0.168 4.168 11 C 0.294 3.706 12 O -0.380 6.380 13 N -0.350 5.350 14 C -0.015 4.015 15 C -0.169 4.169 16 C -0.156 4.156 17 C -0.152 4.152 18 C -0.171 4.171 19 C 0.085 3.915 20 H 0.106 0.894 21 C -0.007 4.007 22 C -0.174 4.174 23 C -0.056 4.056 24 N -0.205 5.205 25 C -0.054 4.054 26 C -0.191 4.191 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.146 0.854 43 H 0.164 0.836 44 H 0.164 0.836 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.532 -19.872 1.119 20.658 hybrid contribution 1.471 0.974 0.427 1.815 sum 7.003 -18.898 1.546 20.213 Atomic orbital electron populations 1.69988 1.06051 1.26692 1.49968 1.25014 0.94796 0.99173 0.95280 0.86673 0.79574 0.83281 0.78526 1.20252 1.21261 1.20260 1.21163 0.92801 0.91053 1.51650 0.92771 1.18862 0.93063 0.89344 0.98438 1.21899 1.00684 0.92181 1.02022 1.21648 0.88688 0.85694 0.74549 1.90744 1.14013 1.85797 1.47472 1.48019 1.06343 1.05024 1.75603 1.21986 0.78987 1.01421 0.99063 1.21785 0.99689 0.99605 0.95854 1.21078 0.97444 1.00209 0.96875 1.20419 0.95445 0.98428 1.00941 1.21319 0.97938 1.02099 0.95716 1.19758 0.89331 0.87433 0.95016 0.89398 1.19943 0.94511 0.92791 0.93437 1.21790 0.92982 1.02230 1.00418 1.22525 0.97130 0.95111 0.90807 1.67565 1.32848 1.12942 1.07146 1.22484 0.87948 0.95382 0.99570 1.21699 0.98956 1.03177 0.95245 0.92889 0.95994 0.96016 0.90421 0.90522 0.89052 0.92089 0.90624 0.91763 0.91961 0.91166 0.92447 0.92333 0.90968 0.90794 0.85445 0.83589 0.83619 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.60 13.29 55.43 0.74 -26.86 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -14.96 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.04 1.08 4.26 -27.89 -0.12 0.97 16 10 C -0.13 -2.56 3.94 -27.88 -0.11 -2.67 16 11 C 0.50 9.29 7.19 -10.98 -0.08 9.21 16 12 O -0.51 -11.15 12.00 5.56 0.07 -11.09 16 13 N -0.61 -8.28 2.16 -166.23 -0.36 -8.64 16 14 C 0.11 1.12 5.96 -2.94 -0.02 1.10 16 15 C -0.13 -1.06 5.71 -27.30 -0.16 -1.22 16 16 C -0.12 -1.08 5.51 -28.01 -0.15 -1.24 16 17 C -0.11 -1.01 5.15 -29.82 -0.15 -1.17 16 18 C -0.13 -1.42 3.77 -28.62 -0.11 -1.53 16 19 C 0.19 2.30 2.30 -69.13 -0.16 2.14 16 20 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 21 C 0.00 0.03 3.06 -104.32 -0.32 -0.29 16 22 C -0.15 -2.29 8.01 -39.44 -0.32 -2.60 16 23 C 0.10 1.58 11.18 -17.55 -0.20 1.38 16 24 N -0.49 -8.56 10.36 -13.25 -0.14 -8.69 16 25 C 0.10 1.64 11.18 -17.55 -0.20 1.44 16 26 C -0.17 -2.58 8.88 -39.44 -0.35 -2.93 16 27 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 28 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 29 H 0.02 0.64 8.10 -51.93 -0.42 0.22 16 30 H 0.08 1.43 7.59 -51.93 -0.39 1.04 16 31 H 0.08 1.42 7.87 -51.93 -0.41 1.01 16 32 H 0.09 1.00 5.79 -51.93 -0.30 0.70 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.46 7.32 -51.93 -0.38 0.08 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.81 7.48 -51.93 -0.39 0.42 16 38 H 0.06 0.44 7.36 -51.93 -0.38 0.06 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.96 7.99 -51.93 -0.41 0.55 16 41 H 0.07 0.70 7.04 -51.93 -0.37 0.34 16 42 H 0.13 1.65 6.08 -52.49 -0.32 1.33 16 43 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 44 H 0.15 1.96 8.06 -52.48 -0.42 1.53 16 45 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 350.90 15.07 5.29 5.29 Total: -1.00 -34.46 350.90 -9.38 -43.85 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -7.11 Total: 0.50 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -2.84 Total: -11.05 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.24 Total: -44.19 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.07 Total: -11.09 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.46 -9.38 -43.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292230708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.155 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds