Wall clock time and date at job start Tue Mar 31 2020 07:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99911 * 2 1 4 4 H 1.48507 * 109.46742 * 239.99819 * 3 2 1 5 5 H 1.48494 * 109.47368 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47425 * 119.99973 * 3 2 1 7 7 C 1.37872 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00056 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47457 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47311 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00119 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00227 * 179.97438 * 11 10 9 14 14 C 1.47607 * 118.64226 * 355.86878 * 13 11 10 15 15 C 1.53948 * 112.14093 * 137.86633 * 14 13 11 16 16 C 1.50884 * 110.09409 * 319.43481 * 15 14 13 17 17 C 1.52572 * 109.37428 * 91.88033 * 16 15 14 18 18 C 1.47012 * 114.32129 * 274.99782 * 17 16 15 19 19 C 1.44581 * 118.64847 * 175.84274 * 13 11 10 20 20 H 1.08996 * 109.45186 * 150.68428 * 19 13 11 21 21 C 1.50706 * 109.44449 * 30.74305 * 19 13 11 22 22 C 1.38649 * 120.78631 * 244.45332 * 21 19 13 23 23 C 1.38202 * 119.16182 * 179.80004 * 22 21 19 24 24 N 1.31873 * 120.76092 * 0.48673 * 23 22 21 25 25 C 1.31865 * 121.72934 * 359.73960 * 24 23 22 26 26 C 1.38207 * 120.76175 * 0.02562 * 25 24 23 27 27 H 0.97004 * 119.99903 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47099 * 60.00065 * 9 7 2 29 29 H 1.09004 * 109.47471 * 300.00347 * 9 7 2 30 30 H 1.09002 * 109.47113 * 60.00717 * 10 9 7 31 31 H 1.08995 * 109.47407 * 300.00489 * 10 9 7 32 32 H 1.08998 * 108.94690 * 17.17971 * 14 13 11 33 33 H 1.09003 * 108.94486 * 258.55088 * 14 13 11 34 34 H 1.09001 * 109.36840 * 199.24074 * 15 14 13 35 35 H 1.08999 * 109.26115 * 79.55768 * 15 14 13 36 36 H 1.08993 * 109.48876 * 211.85686 * 16 15 14 37 37 H 1.09000 * 109.48969 * 331.90738 * 16 15 14 38 38 H 1.09001 * 108.51217 * 36.24667 * 17 16 15 39 39 H 1.08997 * 108.50722 * 153.73803 * 17 16 15 40 40 H 1.08995 * 109.32534 * 302.52154 * 18 17 16 41 41 H 1.09000 * 109.30612 * 183.05921 * 18 17 16 42 42 H 1.08000 * 120.42218 * 359.97438 * 22 21 19 43 43 H 1.08001 * 119.62201 * 180.24869 * 23 22 21 44 44 H 1.08004 * 119.62156 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.41600 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4917 -4.9671 0.0012 12 8 0.2789 -4.9672 0.0011 13 7 2.1656 -6.1343 0.0008 14 6 3.6383 -6.1011 -0.0936 15 6 4.3037 -7.1100 0.8599 16 6 3.5855 -7.1207 2.1868 17 6 2.4984 -8.1910 2.1653 18 6 1.2237 -7.7478 1.5821 19 6 1.4163 -7.3674 0.0934 20 1 1.9605 -8.1620 -0.4169 21 6 0.0685 -7.1853 -0.5558 22 6 -1.0962 -7.2663 0.1920 23 6 -2.3141 -7.0898 -0.4370 24 7 -2.3761 -6.8566 -1.7334 25 6 -1.2896 -6.7775 -2.4765 26 6 -0.0366 -6.9386 -1.9161 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 2.8718 -3.6043 0.8906 31 1 2.8719 -3.6043 -0.8894 32 1 3.9862 -5.0981 0.1534 33 1 3.9326 -6.3341 -1.1170 34 1 5.3452 -6.8282 1.0149 35 1 4.2605 -8.1053 0.4175 36 1 4.2963 -7.3402 2.9833 37 1 3.1319 -6.1452 2.3627 38 1 2.8633 -9.0434 1.5923 39 1 2.3155 -8.5190 3.1885 40 1 0.8578 -6.8806 2.1317 41 1 0.4936 -8.5536 1.6570 42 1 -1.0522 -7.4621 1.2532 43 1 -3.2258 -7.1474 0.1392 44 1 -1.3800 -6.5846 -3.5354 45 1 0.8495 -6.8731 -2.5301 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292230708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:18 Heat of formation + Delta-G solvation = -23.319537 kcal Electronic energy + Delta-G solvation = -25715.140398 eV Core-core repulsion = 22310.465748 eV Total energy + Delta-G solvation = -3404.674650 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.08856 -40.31854 -38.57666 -35.78246 -35.00428 -34.89364 -32.81195 -32.11874 -31.79388 -28.50708 -27.26783 -26.52249 -24.53267 -23.91426 -23.27120 -22.09282 -21.20373 -19.60099 -18.86296 -17.91141 -17.47736 -17.21065 -16.87005 -16.59116 -16.45874 -16.19080 -15.70974 -15.17077 -15.07973 -14.67038 -14.61646 -14.31659 -14.23896 -14.03307 -13.82581 -13.48472 -13.31313 -13.06732 -12.79988 -12.77034 -12.51407 -12.21448 -12.02319 -11.93619 -11.65540 -11.57262 -11.47866 -11.32781 -11.27194 -11.12311 -10.57942 -10.36224 -9.93684 -9.70033 -9.50568 -8.19428 -6.34076 0.35600 0.44520 1.39848 1.44369 1.52198 1.75356 2.11537 2.41548 3.00868 3.13453 3.43406 3.66821 3.73281 3.77313 3.95049 4.07539 4.08274 4.19053 4.26273 4.30968 4.39983 4.40516 4.46855 4.51237 4.66518 4.71991 4.80213 4.82286 4.91658 4.94271 5.02240 5.07721 5.16874 5.26419 5.29633 5.30603 5.40464 5.44084 5.46315 5.53016 5.61277 5.78584 5.84257 5.92674 6.16025 6.39767 6.84758 7.15018 7.34601 7.37585 8.92784 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.004970 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.147670 B = 5632.813629 C = 7183.472540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.051 3.949 10 C -0.116 4.116 11 C 0.503 3.497 12 O -0.554 6.554 13 N -0.597 5.597 14 C 0.097 3.903 15 C -0.123 4.123 16 C -0.120 4.120 17 C -0.114 4.114 18 C -0.125 4.125 19 C 0.187 3.813 20 H 0.122 0.878 21 C -0.005 4.005 22 C -0.160 4.160 23 C 0.080 3.920 24 N -0.524 5.524 25 C 0.082 3.918 26 C -0.178 4.178 27 H 0.262 0.738 28 H -0.024 1.024 29 H -0.023 1.023 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.039 0.961 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.039 0.961 41 H 0.088 0.912 42 H 0.142 0.858 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.779 -21.407 1.714 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.093 0.907 9 C 0.013 3.987 10 C -0.155 4.155 11 C 0.293 3.707 12 O -0.432 6.432 13 N -0.330 5.330 14 C -0.024 4.024 15 C -0.161 4.161 16 C -0.158 4.158 17 C -0.152 4.152 18 C -0.163 4.163 19 C 0.084 3.916 20 H 0.139 0.861 21 C -0.014 4.014 22 C -0.181 4.181 23 C -0.076 4.076 24 N -0.235 5.235 25 C -0.074 4.074 26 C -0.198 4.198 27 H 0.071 0.929 28 H -0.005 1.005 29 H -0.004 1.004 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.106 0.894 42 H 0.160 0.840 43 H 0.181 0.819 44 H 0.179 0.821 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.224 -21.221 1.325 23.177 hybrid contribution 0.330 1.334 0.381 1.426 sum 9.553 -19.887 1.706 22.128 Atomic orbital electron populations 1.70182 1.08378 1.27808 1.51421 1.26130 0.95657 1.03939 0.94591 0.85401 0.78094 0.77392 0.79541 1.18613 1.21405 1.18582 1.21677 0.93895 0.91685 1.50882 0.90728 1.18593 0.93457 0.92493 0.94132 1.21626 0.99193 0.90911 1.03804 1.21293 0.87970 0.86675 0.74793 1.90738 1.15801 1.86639 1.49996 1.47903 1.07788 1.03889 1.73445 1.22328 0.76585 1.02248 1.01218 1.21773 1.00102 0.99787 0.94392 1.21100 0.97821 0.98661 0.98223 1.20418 0.94190 0.98939 1.01607 1.21269 0.99598 1.01217 0.94223 1.20030 0.88202 0.87242 0.96168 0.86065 1.20305 0.95782 0.91879 0.93427 1.22036 0.92994 1.01825 1.01203 1.22930 0.98479 0.95351 0.90800 1.67557 1.33806 1.14078 1.08026 1.22875 0.88322 0.95710 1.00515 1.21936 0.99164 1.02841 0.95866 0.92939 1.00529 1.00440 0.88606 0.88541 0.89697 0.89900 0.88677 0.89800 0.90507 0.94219 0.90120 0.91651 0.94219 0.89384 0.83999 0.81932 0.82069 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.49 13.29 21.44 0.28 -60.21 16 2 C -0.01 -0.34 5.46 84.65 0.46 0.13 16 3 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.54 -31.17 9.11 25.60 0.23 -30.94 16 8 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 9 C 0.05 2.86 4.26 29.84 0.13 2.99 16 10 C -0.12 -4.64 3.94 29.85 0.12 -4.52 16 11 C 0.50 18.70 7.19 87.66 0.63 19.33 16 12 O -0.55 -25.49 12.00 -3.03 -0.04 -25.53 16 13 N -0.60 -15.06 2.16 -798.23 -1.72 -16.78 16 14 C 0.10 1.69 5.96 86.49 0.52 2.20 16 15 C -0.12 -1.44 5.71 30.23 0.17 -1.26 16 16 C -0.12 -1.83 5.51 29.76 0.16 -1.66 16 17 C -0.11 -1.64 5.15 28.59 0.15 -1.49 16 18 C -0.12 -2.46 3.77 29.37 0.11 -2.35 16 19 C 0.19 4.15 2.30 45.24 0.10 4.26 16 20 H 0.12 1.97 8.07 -2.39 -0.02 1.95 16 21 C 0.00 -0.14 3.06 -19.67 -0.06 -0.21 16 22 C -0.16 -4.86 8.01 22.36 0.18 -4.68 16 23 C 0.08 2.62 11.18 84.68 0.95 3.57 16 24 N -0.52 -18.88 10.36 -195.84 -2.03 -20.90 16 25 C 0.08 2.69 11.18 84.68 0.95 3.64 16 26 C -0.18 -5.37 8.88 22.36 0.20 -5.17 16 27 H 0.26 15.90 8.31 -92.71 -0.77 15.12 16 28 H -0.02 -1.53 8.10 -2.38 -0.02 -1.55 16 29 H -0.02 -1.46 8.10 -2.38 -0.02 -1.48 16 30 H 0.10 3.46 7.59 -2.39 -0.02 3.45 16 31 H 0.10 3.45 7.87 -2.39 -0.02 3.43 16 32 H 0.08 1.61 5.79 -2.39 -0.01 1.59 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.72 7.32 -2.39 -0.02 0.70 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.04 0.85 7.48 -2.39 -0.02 0.84 16 38 H 0.08 0.84 7.36 -2.39 -0.02 0.82 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.04 1.05 7.99 -2.39 -0.02 1.03 16 41 H 0.09 1.49 7.04 -2.39 -0.02 1.47 16 42 H 0.14 3.71 6.08 -2.91 -0.02 3.69 16 43 H 0.16 4.45 8.06 -2.91 -0.02 4.43 16 44 H 0.16 4.47 8.06 -2.91 -0.02 4.45 16 45 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -80.02 350.90 4.48 -75.53 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.96 Total: 17.44 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 5.00 Total: -16.17 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -3.47 Total: -97.89 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.04 Total: -25.53 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -80.02 4.48 -75.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292230708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.215 kcal (2) G-P(sol) polarization free energy of solvation -80.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds