Wall clock time and date at job start Tue Mar 31 2020 08:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.25191 * 2 1 4 4 C 1.52734 * 109.25498 * 119.47003 * 2 1 3 5 5 C 1.53331 * 108.37700 * 171.34108 * 4 2 1 6 6 C 1.52731 * 108.37363 * 290.07555 * 5 4 2 7 7 H 1.09002 * 109.25668 * 290.82824 * 6 5 4 8 8 N 1.46498 * 109.25341 * 171.35702 * 6 5 4 9 9 C 1.34777 * 119.99828 * 154.72214 * 8 6 5 10 10 O 1.21593 * 119.99949 * 0.28071 * 9 8 6 11 11 N 1.34777 * 120.00128 * 180.27942 * 9 8 6 12 12 C 1.46499 * 120.00065 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47138 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00043 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00213 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99609 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00201 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46807 * 60.00091 * 17 15 13 19 19 H 1.48498 * 109.47276 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47057 * 299.99983 * 17 15 13 21 21 C 1.50630 * 110.58237 * 51.07425 * 6 5 4 22 22 C 1.38917 * 117.74085 * 162.51458 * 21 6 5 23 23 C 1.37932 * 120.54473 * 179.75631 * 22 21 6 24 24 C 1.38267 * 119.77149 * 0.02562 * 23 22 21 25 25 C 1.37935 * 119.76989 * 0.10343 * 24 23 22 26 26 C 1.37660 * 122.57639 * 342.45033 * 21 6 5 27 27 H 1.08993 * 109.46772 * 300.53060 * 1 2 3 28 28 H 1.09006 * 109.46653 * 60.53363 * 1 2 3 29 29 H 1.09000 * 109.47019 * 180.53083 * 1 2 3 30 30 H 1.09000 * 109.47220 * 179.47001 * 3 2 1 31 31 H 1.09002 * 109.47135 * 299.46663 * 3 2 1 32 32 H 1.09000 * 109.46740 * 59.46687 * 3 2 1 33 33 H 1.09000 * 109.68221 * 51.61974 * 4 2 1 34 34 H 1.08995 * 109.68242 * 291.06536 * 4 2 1 35 35 H 1.09000 * 109.68100 * 170.35116 * 5 4 2 36 36 H 1.09004 * 109.71167 * 49.81781 * 5 4 2 37 37 H 0.97001 * 120.00384 * 335.00661 * 8 6 5 38 38 H 0.97000 * 119.99549 * 359.97438 * 11 9 8 39 39 H 1.09000 * 109.47602 * 299.99940 * 12 11 9 40 40 H 1.09006 * 109.46868 * 59.99976 * 12 11 9 41 41 H 0.96997 * 119.99506 * 180.02562 * 16 15 13 42 42 H 1.07999 * 119.72872 * 359.75313 * 22 21 6 43 43 H 1.07998 * 120.11829 * 179.97438 * 23 22 21 44 44 H 1.07994 * 120.11928 * 180.12497 * 24 23 22 45 45 H 1.08000 * 119.72808 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0345 1.4445 0.0000 4 6 2.0337 -0.7094 1.2553 5 6 3.5512 -0.8912 1.1319 6 6 3.8248 -1.9294 0.0456 7 1 3.4994 -2.9094 0.3948 8 7 5.2624 -1.9690 -0.2337 9 6 5.8205 -3.0876 -0.7374 10 8 5.1299 -4.0622 -0.9648 11 7 7.1440 -3.1259 -0.9890 12 6 7.7505 -4.3416 -1.5371 13 6 9.2298 -4.1242 -1.7251 14 1 9.6739 -3.1755 -1.4622 15 6 10.0166 -5.1368 -2.2317 16 7 9.4759 -6.2923 -2.5514 17 14 11.8504 -4.8675 -2.4640 18 1 12.4739 -4.5500 -1.1542 19 1 12.4652 -6.0998 -3.0197 20 1 12.0698 -3.7386 -3.4034 21 6 3.0827 -1.5817 -1.2182 22 6 3.4954 -2.1880 -2.3980 23 6 2.8535 -1.9152 -3.5881 24 6 1.7909 -1.0308 -3.6080 25 6 1.3814 -0.4258 -2.4381 26 6 2.0268 -0.6987 -1.2387 27 1 -0.3632 0.5220 0.8851 28 1 -0.3633 0.5056 -0.8948 29 1 -0.3633 -1.0276 0.0095 30 1 3.1245 1.4487 0.0095 31 1 1.6770 1.9542 -0.8947 32 1 1.6614 1.9596 0.8852 33 1 1.5532 -1.6837 1.3442 34 1 1.8065 -0.1059 2.1341 35 1 3.9579 -1.2378 2.0819 36 1 4.0141 0.0570 0.8585 37 1 5.8133 -1.1915 -0.0522 38 1 7.6948 -2.3483 -0.8080 39 1 7.5894 -5.1706 -0.8479 40 1 7.2927 -4.5744 -2.4986 41 1 10.0294 -7.0048 -2.9074 42 1 4.3256 -2.8785 -2.3834 43 1 3.1804 -2.3902 -4.5013 44 1 1.2830 -0.8147 -4.5363 45 1 0.5515 0.2652 -2.4545 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335701310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:15 Heat of formation + Delta-G solvation = -21.378315 kcal Electronic energy + Delta-G solvation = -24940.679709 eV Core-core repulsion = 21536.089237 eV Total energy + Delta-G solvation = -3404.590472 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.81488 -38.99422 -36.82733 -35.32855 -34.02749 -32.46193 -31.41437 -30.20774 -29.77725 -27.48648 -27.28130 -25.50558 -23.00368 -22.77310 -22.51496 -20.74041 -20.13592 -18.78506 -18.01180 -16.78963 -16.10604 -15.87481 -15.49230 -15.17145 -14.78361 -14.59046 -14.28080 -14.02128 -13.90664 -13.42932 -13.27418 -12.99124 -12.77429 -12.68033 -12.15914 -12.11515 -11.95378 -11.91017 -11.86298 -11.66351 -11.36109 -11.26152 -10.96747 -10.87101 -10.77663 -10.37903 -10.30481 -10.27415 -9.41622 -9.37451 -8.78783 -8.68910 -8.53115 -8.47638 -7.76327 -6.14327 -4.20926 1.48168 1.58876 3.26528 3.29843 3.32045 3.39787 3.88864 3.97342 4.33750 4.43030 4.51411 4.68499 4.82294 4.91121 5.08775 5.12723 5.16228 5.21722 5.31087 5.33257 5.36007 5.43690 5.49195 5.61243 5.66123 5.70679 5.75291 5.79959 5.83418 5.94985 6.02818 6.10248 6.19301 6.25741 6.28927 6.64513 6.75682 6.78276 6.98973 7.13063 7.21502 7.51887 7.56114 7.57795 7.92131 8.05675 8.77030 8.94649 9.32961 9.48469 10.95850 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.024979 B = 0.003228 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.671258 B = 8672.628042 C = 9195.035623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.024 4.024 3 C -0.138 4.138 4 C -0.106 4.106 5 C -0.127 4.127 6 C 0.206 3.794 7 H 0.096 0.904 8 N -0.751 5.751 9 C 0.693 3.307 10 O -0.597 6.597 11 N -0.729 5.729 12 C 0.268 3.732 13 C -0.543 4.543 14 H 0.062 0.938 15 C 0.064 3.936 16 N -0.886 5.886 17 Si 0.904 3.096 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.276 1.276 21 C -0.089 4.089 22 C -0.099 4.099 23 C -0.128 4.128 24 C -0.122 4.122 25 C -0.130 4.130 26 C -0.064 4.064 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.392 0.608 38 H 0.386 0.614 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.266 0.734 42 H 0.142 0.858 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.674 16.291 5.524 23.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 C -0.195 4.195 4 C -0.144 4.144 5 C -0.165 4.165 6 C 0.101 3.899 7 H 0.113 0.887 8 N -0.406 5.406 9 C 0.393 3.607 10 O -0.477 6.477 11 N -0.380 5.380 12 C 0.146 3.854 13 C -0.581 4.581 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.091 4.091 22 C -0.117 4.117 23 C -0.146 4.146 24 C -0.140 4.140 25 C -0.148 4.148 26 C -0.065 4.065 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.225 0.775 38 H 0.218 0.782 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.160 0.840 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.213 15.133 5.219 23.506 hybrid contribution 1.541 0.710 -0.239 1.714 sum -15.672 15.843 4.980 22.834 Atomic orbital electron populations 1.21959 0.93958 1.02140 1.01721 1.19423 0.95442 0.95069 0.92508 1.21939 1.01511 0.94416 1.01649 1.21598 0.94919 1.01004 0.96831 1.21871 0.96856 0.99205 0.98526 1.19442 0.79465 0.99982 0.91041 0.88662 1.45287 1.08290 1.15736 1.71335 1.16167 0.83048 0.82893 0.78614 1.90874 1.61851 1.35218 1.59729 1.45751 1.05434 1.19221 1.67636 1.18973 0.91733 0.80701 0.93948 1.21192 0.92330 0.99918 1.44660 0.92026 1.24939 0.99179 0.94850 0.95021 1.69971 1.36193 1.03716 1.42408 0.86478 0.84293 0.77617 0.78527 1.20093 1.21083 1.20099 1.20045 0.96235 0.96964 0.95806 1.21841 1.00045 0.98105 0.91688 1.21154 0.96527 0.98655 0.98292 1.21045 0.97447 0.97671 0.97822 1.21046 1.00412 1.01071 0.92281 1.19421 0.95791 0.96850 0.94395 0.92456 0.92322 0.92373 0.92236 0.92600 0.92430 0.91172 0.90996 0.90711 0.90838 0.77490 0.78152 0.95721 0.95763 0.92415 0.84049 0.86373 0.86622 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 7.98 37.16 0.30 -0.81 16 2 C -0.02 -0.22 0.63 -155.82 -0.10 -0.32 16 3 C -0.14 -1.11 8.18 37.16 0.30 -0.81 16 4 C -0.11 -0.93 4.69 -26.70 -0.13 -1.05 16 5 C -0.13 -1.25 5.38 -26.70 -0.14 -1.39 16 6 C 0.21 2.85 2.59 -69.26 -0.18 2.67 16 7 H 0.10 1.53 7.58 -51.93 -0.39 1.13 16 8 N -0.75 -11.30 4.85 -59.98 -0.29 -11.59 16 9 C 0.69 14.03 7.09 -86.92 -0.62 13.42 16 10 O -0.60 -14.45 14.10 5.28 0.07 -14.37 16 11 N -0.73 -15.48 5.55 -66.41 -0.37 -15.85 16 12 C 0.27 7.14 5.43 -5.19 -0.03 7.11 16 13 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 14 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 15 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 17 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 C -0.09 -1.29 5.55 -104.62 -0.58 -1.87 16 22 C -0.10 -1.67 9.00 -39.44 -0.35 -2.02 16 23 C -0.13 -1.91 10.05 -39.68 -0.40 -2.30 16 24 C -0.12 -1.52 10.05 -39.68 -0.40 -1.92 16 25 C -0.13 -1.52 8.88 -39.44 -0.35 -1.87 16 26 C -0.06 -0.78 4.70 -104.61 -0.49 -1.27 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.43 6.36 -51.93 -0.33 0.10 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 31 H 0.05 0.45 8.04 -51.93 -0.42 0.03 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.67 6.26 -51.93 -0.32 0.34 16 37 H 0.39 4.79 8.61 -40.82 -0.35 4.44 16 38 H 0.39 7.06 8.34 -40.82 -0.34 6.72 16 39 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.14 2.86 4.39 -52.49 -0.23 2.63 16 43 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.12 1.10 6.33 -52.49 -0.33 0.77 16 LS Contribution 352.96 15.07 5.32 5.32 Total: -1.00 -32.15 352.96 -9.94 -42.09 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -6.81 Total: 9.84 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -3.58 Total: -5.87 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.08 Total: -52.92 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: 0.07 Total: -14.37 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.15 -9.94 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335701310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.714 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds