Wall clock time and date at job start Tue Mar 31 2020 08:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46951 * 2 1 4 4 C 1.53005 * 109.46893 * 240.00248 * 2 1 3 5 5 C 1.50699 * 109.46913 * 60.00107 * 4 2 1 6 6 H 1.07993 * 120.00408 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99553 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00389 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99821 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47207 * 90.00219 * 9 7 5 11 11 H 1.48501 * 109.47218 * 209.99776 * 9 7 5 12 12 H 1.48495 * 109.47413 * 330.00022 * 9 7 5 13 13 C 1.52992 * 109.47195 * 120.00153 * 2 1 3 14 14 N 1.46499 * 109.47267 * 300.00079 * 13 2 1 15 15 C 1.39675 * 119.99822 * 180.02562 * 14 13 2 16 16 C 1.38985 * 120.04025 * 359.72134 * 15 14 13 17 17 C 1.38131 * 120.06231 * 179.69409 * 16 15 14 18 18 C 1.38189 * 120.14418 * 0.60922 * 17 16 15 19 19 C 1.38910 * 120.07942 * 359.66823 * 18 17 16 20 20 N 1.39919 * 120.03608 * 180.02562 * 19 18 17 21 21 C 1.46359 * 134.66612 * 359.97438 * 20 19 18 22 22 C 1.52874 * 90.57554 * 179.97438 * 21 20 19 23 23 C 1.34604 * 134.67007 * 179.61567 * 20 19 18 24 24 O 1.21292 * 131.84420 * 0.02562 * 23 20 19 25 25 C 1.38762 * 119.93085 * 0.03086 * 19 18 17 26 26 H 1.08996 * 109.47248 * 299.99428 * 1 2 3 27 27 H 1.08996 * 109.47200 * 60.00228 * 1 2 3 28 28 H 1.09005 * 109.46932 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47440 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47244 * 300.00375 * 3 2 1 31 31 H 1.09005 * 109.47269 * 60.00262 * 3 2 1 32 32 H 1.08997 * 109.46785 * 179.97438 * 4 2 1 33 33 H 1.08992 * 109.47085 * 299.99703 * 4 2 1 34 34 H 0.97005 * 120.00528 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47330 * 179.97438 * 13 2 1 36 36 H 1.09005 * 109.47124 * 60.00187 * 13 2 1 37 37 H 0.96999 * 119.99984 * 359.97438 * 14 13 2 38 38 H 1.07993 * 119.96917 * 359.97438 * 16 15 14 39 39 H 1.08000 * 119.92793 * 180.27642 * 17 16 15 40 40 H 1.07998 * 119.96092 * 179.69444 * 18 17 16 41 41 H 1.09010 * 113.04489 * 295.42576 * 21 20 19 42 42 H 1.09002 * 113.05505 * 64.51224 * 21 20 19 43 43 H 1.08999 * 114.38076 * 113.38896 * 22 21 20 44 44 H 1.08996 * 114.37933 * 246.56567 * 22 21 20 45 45 H 1.07999 * 120.07137 * 180.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8711 -0.4814 -3.7320 8 7 2.6272 -1.5507 -3.8527 9 14 1.2479 0.3988 -5.2571 10 1 2.2253 1.4413 -5.6612 11 1 1.0837 -0.5804 -6.3615 12 1 -0.0607 1.0353 -4.9613 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8896 -0.5077 3.7139 16 6 2.6843 -1.6407 3.8423 17 6 3.0240 -2.1091 5.0965 18 6 2.5649 -1.4608 6.2273 19 6 1.7656 -0.3312 6.1059 20 7 1.3017 0.3248 7.2514 21 6 1.4526 0.1114 8.6915 22 6 0.5863 1.3377 8.9795 23 6 0.5404 1.4119 7.4764 24 8 -0.0015 2.1907 6.7208 25 6 1.4275 0.1458 4.8475 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -1.7488 -1.2493 34 1 2.8621 -1.8817 -4.7338 35 1 3.1301 -0.7217 1.2489 36 1 1.6767 -1.7490 1.2491 37 1 0.9943 0.7582 2.3564 38 1 3.0403 -2.1527 2.9606 39 1 3.6453 -2.9871 5.1938 40 1 2.8283 -1.8325 7.2065 41 1 1.0015 -0.8198 9.0344 42 1 2.4810 0.2252 9.0344 43 1 -0.3700 1.1122 9.4514 44 1 1.1183 2.1634 9.4520 45 1 0.8065 1.0240 4.7505 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280193749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:30 Heat of formation + Delta-G solvation = 11.625436 kcal Electronic energy + Delta-G solvation = -23946.533413 eV Core-core repulsion = 20543.374091 eV Total energy + Delta-G solvation = -3403.159322 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.49165 -39.23569 -37.49406 -36.81000 -34.31124 -32.34221 -31.99308 -29.39443 -27.95660 -26.96314 -26.47752 -25.76337 -24.86720 -23.14827 -22.53098 -21.58225 -19.00661 -18.27732 -17.64202 -17.07331 -16.91986 -16.34368 -16.03649 -15.84371 -14.97573 -14.45374 -14.39132 -13.96737 -13.58854 -13.53469 -13.31365 -13.13950 -13.02240 -12.77994 -12.65089 -12.44901 -12.08676 -12.06326 -11.50119 -11.36130 -11.25936 -11.01506 -10.84255 -10.66287 -10.51648 -10.38292 -10.24132 -10.21503 -9.90193 -9.60570 -9.20360 -8.93487 -8.36892 -8.08772 -7.19584 -6.01319 -4.02109 1.28721 1.66170 2.39641 2.50991 3.30692 3.35761 3.37610 3.40106 3.78629 3.99721 4.10491 4.45019 4.45745 4.87461 4.89964 5.08155 5.20584 5.34516 5.35054 5.36591 5.39807 5.44336 5.60861 5.61023 5.75883 5.79434 6.02771 6.18035 6.20178 6.27397 6.34195 6.40592 6.49938 6.61598 6.65766 6.66982 6.73841 6.95661 7.06510 7.08502 7.12294 7.59161 7.61471 7.74393 7.82135 7.97542 7.99122 8.40355 9.02483 9.61127 11.10193 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.029835 B = 0.002626 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.258992 B =10659.130907 C =11389.976730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.131 3.869 14 N -0.733 5.733 15 C 0.256 3.744 16 C -0.221 4.221 17 C -0.041 4.041 18 C -0.225 4.225 19 C 0.221 3.779 20 N -0.576 5.576 21 C 0.095 3.905 22 C -0.167 4.167 23 C 0.511 3.489 24 O -0.498 6.498 25 C -0.238 4.238 26 H 0.029 0.971 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.399 0.601 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 0.987 26.562 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.548 4.548 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.008 3.992 14 N -0.360 5.360 15 C 0.148 3.852 16 C -0.245 4.245 17 C -0.061 4.061 18 C -0.247 4.247 19 C 0.128 3.872 20 N -0.302 5.302 21 C -0.027 4.027 22 C -0.207 4.207 23 C 0.299 3.701 24 O -0.370 6.370 25 C -0.264 4.264 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.236 0.764 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.134 0.866 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.831 1.137 25.676 25.715 hybrid contribution -0.392 0.584 -1.016 1.236 sum -1.223 1.721 24.660 24.750 Atomic orbital electron populations 1.21749 0.95284 1.01084 1.00280 1.20863 0.95489 0.95860 0.94894 1.21748 1.00416 0.95955 1.00277 1.19093 0.96253 0.95174 0.89586 1.21188 1.31083 1.12049 0.90528 0.92284 1.25006 0.95334 0.95072 0.99086 1.69958 1.37081 1.23046 1.23430 0.86647 0.79233 0.79417 0.83017 1.20758 1.21319 1.19941 1.21632 0.98202 0.95803 0.83585 1.45111 1.56062 1.32526 1.02292 1.17608 0.90991 0.91425 0.85142 1.20691 1.06180 0.99404 0.98222 1.20631 0.96385 0.97764 0.91305 1.20274 1.06749 0.98776 0.98940 1.17203 0.94203 0.91887 0.83875 1.47595 1.48997 1.27886 1.05749 1.22682 1.01841 0.99605 0.78545 1.23424 1.03133 0.99549 0.94620 1.22272 0.77440 0.79739 0.90694 1.90739 1.45265 1.41910 1.59076 1.20169 1.10968 1.05491 0.89724 0.95160 0.91532 0.93442 0.93440 0.91540 0.95158 0.96404 0.96392 0.93057 0.92440 0.92439 0.76450 0.85682 0.85868 0.86619 0.88925 0.88939 0.85715 0.85770 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 2 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 3 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.66 7.65 -34.44 -0.26 -13.93 16 6 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 9 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.13 2.24 3.80 -4.05 -0.02 2.22 16 14 N -0.73 -11.41 5.13 -58.65 -0.30 -11.71 16 15 C 0.26 3.87 6.65 -83.81 -0.56 3.32 16 16 C -0.22 -3.08 9.31 -39.34 -0.37 -3.45 16 17 C -0.04 -0.49 10.03 -39.64 -0.40 -0.88 16 18 C -0.22 -2.55 9.73 -39.35 -0.38 -2.93 16 19 C 0.22 2.87 6.75 -83.72 -0.56 2.31 16 20 N -0.58 -6.08 3.56 -138.62 -0.49 -6.58 16 21 C 0.10 0.49 8.33 -16.46 -0.14 0.35 16 22 C -0.17 -0.79 8.56 -28.01 -0.24 -1.03 16 23 C 0.51 5.69 8.89 -23.41 -0.21 5.48 16 24 O -0.50 -7.78 16.92 5.55 0.09 -7.68 16 25 C -0.24 -3.56 9.51 -39.19 -0.37 -3.94 16 26 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 27 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 31 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.06 0.99 7.96 -51.93 -0.41 0.58 16 36 H 0.06 0.99 7.94 -51.93 -0.41 0.58 16 37 H 0.40 6.10 6.17 -40.82 -0.25 5.85 16 38 H 0.13 1.72 6.72 -52.49 -0.35 1.37 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.12 1.01 7.84 -52.49 -0.41 0.60 16 41 H 0.09 0.32 8.14 -51.92 -0.42 -0.10 16 42 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.13 2.04 6.88 -52.49 -0.36 1.68 16 LS Contribution 362.76 15.07 5.47 5.47 Total: -1.00 -32.48 362.76 -9.56 -42.04 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.84 Total: 3.52 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -3.20 Total: -15.79 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -0.06 Total: -43.92 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.09 Total: -7.68 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.48 -9.56 -42.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280193749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.663 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds