Wall clock time and date at job start Tue Mar 31 2020 08:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00309 * 2 1 4 4 N 1.46894 * 109.47297 * 125.07906 * 3 2 1 5 5 C 1.46901 * 111.00136 * 301.02562 * 4 3 2 6 6 C 1.50703 * 109.46737 * 288.58727 * 5 4 3 7 7 H 1.08006 * 120.00230 * 4.93363 * 6 5 4 8 8 C 1.37873 * 120.00014 * 184.93179 * 6 5 4 9 9 N 1.31516 * 119.99942 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00035 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46763 * 60.00409 * 10 8 6 12 12 H 1.48502 * 109.46919 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47421 * 300.00125 * 10 8 6 14 14 C 1.46907 * 110.99600 * 64.97504 * 4 3 2 15 15 C 1.50697 * 109.47044 * 66.04679 * 14 4 3 16 16 O 1.21286 * 120.00255 * 0.02562 * 15 14 4 17 17 N 1.34774 * 119.99752 * 179.97438 * 15 14 4 18 18 C 1.39924 * 119.99891 * 184.83056 * 17 15 14 19 19 C 1.38889 * 120.07158 * 325.81819 * 18 17 15 20 20 C 1.38088 * 119.93070 * 180.02562 * 19 18 17 21 21 C 1.38310 * 120.07046 * 359.97438 * 20 19 18 22 22 C 1.38260 * 120.13931 * 0.02562 * 21 20 19 23 23 C 1.38126 * 120.07291 * 0.25478 * 22 21 20 24 24 C 1.50693 * 120.03969 * 179.72337 * 23 22 21 25 25 C 1.53003 * 109.47496 * 265.00100 * 24 23 22 26 26 H 1.08004 * 120.00002 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00142 * 180.02562 * 1 2 3 28 28 H 1.08004 * 120.00002 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46692 * 5.07971 * 3 2 1 30 30 H 1.09001 * 109.47112 * 245.08634 * 3 2 1 31 31 H 1.08992 * 109.47676 * 48.58796 * 5 4 3 32 32 H 1.09000 * 109.47446 * 168.59325 * 5 4 3 33 33 H 0.97007 * 120.00084 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.46831 * 306.04238 * 14 4 3 35 35 H 1.09007 * 109.46590 * 186.04835 * 14 4 3 36 36 H 0.97003 * 120.00308 * 4.83109 * 17 15 14 37 37 H 1.08001 * 120.03820 * 359.97438 * 19 18 17 38 38 H 1.07998 * 119.96800 * 180.02562 * 20 19 18 39 39 H 1.08002 * 119.93051 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.95914 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.46950 * 25.00096 * 24 23 22 42 42 H 1.09000 * 109.47830 * 144.99684 * 24 23 22 43 43 H 1.09004 * 109.46743 * 59.99762 * 25 24 23 44 44 H 1.08999 * 109.47186 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.47018 * 299.99954 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9977 1.3311 1.1334 5 6 2.2836 1.1766 2.4078 6 6 1.5071 2.4337 2.7042 7 1 1.4761 3.2330 1.9784 8 6 0.8364 2.5635 3.9017 9 7 0.8745 1.5904 4.7856 10 14 -0.1255 4.1220 4.2693 11 1 -1.1840 4.3039 3.2438 12 1 -0.7512 4.0125 5.6117 13 1 0.7933 5.2883 4.2447 14 6 4.0359 0.3026 0.9835 15 6 4.9031 0.6336 -0.2036 16 8 4.6788 1.6285 -0.8600 17 7 5.9287 -0.1755 -0.5353 18 6 6.7951 0.1831 -1.5739 19 6 6.3112 0.8763 -2.6759 20 6 7.1687 1.2282 -3.6994 21 6 8.5083 0.8917 -3.6278 22 6 8.9931 0.2017 -2.5321 23 6 8.1394 -0.1584 -1.5077 24 6 8.6675 -0.9159 -0.3168 25 6 8.4541 -2.4158 -0.5308 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3587 2.1315 0.0910 30 1 2.6201 1.4032 -0.9320 31 1 1.5969 0.3330 2.3396 32 1 3.0021 0.9964 3.2074 33 1 0.4029 1.6818 5.6284 34 1 3.5656 -0.6687 0.8305 35 1 4.6491 0.2716 1.8842 36 1 6.0662 -1.0065 -0.0541 37 1 5.2652 1.1390 -2.7326 38 1 6.7931 1.7676 -4.5564 39 1 9.1771 1.1685 -4.4294 40 1 10.0396 -0.0600 -2.4794 41 1 9.7321 -0.7134 -0.2003 42 1 8.1369 -0.5979 0.5806 43 1 8.9848 -2.7338 -1.4282 44 1 8.8364 -2.9637 0.3304 45 1 7.3894 -2.6183 -0.6473 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292272606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:09 Heat of formation + Delta-G solvation = 17.408156 kcal Electronic energy + Delta-G solvation = -24483.730051 eV Core-core repulsion = 21080.821486 eV Total energy + Delta-G solvation = -3402.908565 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.63812 -38.79335 -36.80072 -34.91615 -33.87740 -32.82172 -32.16025 -30.18885 -29.40948 -27.85603 -26.51140 -24.30657 -23.97679 -22.84253 -21.14106 -20.86360 -20.31070 -18.98697 -17.58425 -16.84946 -16.15846 -15.98242 -15.77178 -15.07547 -14.75434 -14.61523 -14.22951 -14.17115 -13.84688 -13.72234 -13.59754 -13.45201 -13.17146 -12.41846 -12.32648 -12.18584 -12.04724 -11.75736 -11.49557 -11.20121 -11.13265 -11.07832 -10.93368 -10.75418 -10.67016 -10.52687 -10.19296 -9.94540 -9.61789 -9.13878 -8.79058 -8.67449 -8.39752 -8.07493 -7.27605 -6.00942 -4.00765 1.24733 1.37809 2.78435 2.90097 3.09872 3.36192 3.39473 3.43776 3.77027 4.45015 4.57985 4.69189 4.87993 4.98968 5.01787 5.07470 5.14142 5.27944 5.35921 5.36615 5.47701 5.49681 5.54606 5.59285 5.68783 5.75065 5.77979 5.85978 5.94585 6.04440 6.20559 6.30120 6.40259 6.41624 6.50131 6.56376 6.75937 7.05454 7.12409 7.18690 7.27895 7.39488 7.43908 7.80582 8.04224 8.17603 8.35194 8.52220 9.05581 9.62553 11.10006 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.019980 B = 0.003226 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.083980 B = 8676.833125 C = 8886.897467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.183 4.183 3 C 0.084 3.916 4 N -0.510 5.510 5 C 0.192 3.808 6 C -0.500 4.500 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.901 5.901 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.035 3.965 15 C 0.514 3.486 16 O -0.496 6.496 17 N -0.681 5.681 18 C 0.158 3.842 19 C -0.121 4.121 20 C -0.107 4.107 21 C -0.140 4.140 22 C -0.102 4.102 23 C -0.114 4.114 24 C -0.086 4.086 25 C -0.148 4.148 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.001 0.999 32 H 0.030 0.970 33 H 0.261 0.739 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.407 0.593 37 H 0.141 0.859 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.389 -8.795 -13.478 21.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.203 4.203 3 C -0.044 4.044 4 N -0.233 5.233 5 C 0.068 3.932 6 C -0.539 4.539 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.541 5.541 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.097 4.097 15 C 0.302 3.698 16 O -0.368 6.368 17 N -0.328 5.328 18 C 0.063 3.937 19 C -0.141 4.141 20 C -0.126 4.126 21 C -0.159 4.159 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.123 4.123 25 C -0.206 4.206 26 H 0.116 0.884 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.019 0.981 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.243 0.757 37 H 0.159 0.841 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.323 -7.616 -13.662 21.208 hybrid contribution -0.845 -0.491 0.668 1.183 sum 13.478 -8.107 -12.994 20.401 Atomic orbital electron populations 1.23693 0.95998 1.01164 1.00805 1.23592 0.96863 0.99769 1.00091 1.21420 0.94475 0.93988 0.94511 1.62201 1.13092 1.43462 1.04570 1.19822 0.92603 0.97064 0.83754 1.21061 1.29153 1.01819 1.01844 0.91953 1.24942 0.96846 0.96616 0.96095 1.69941 1.43602 1.32254 1.08266 0.86572 0.80127 0.83588 0.77210 1.20285 1.21431 1.20165 1.21977 0.95765 0.96213 0.95764 1.21250 0.80028 0.82458 0.86034 1.90640 1.68280 1.26049 1.51879 1.43745 1.29341 1.24677 1.35049 1.17635 0.88762 0.98921 0.88359 1.21370 1.01588 0.99440 0.91702 1.21052 0.93482 0.99555 0.98462 1.21065 0.95755 1.00484 0.98603 1.20782 0.98974 0.98792 0.93544 1.19675 0.91554 1.02684 0.97783 1.20487 1.01600 0.94648 0.95605 1.21778 1.01805 0.94968 1.02001 0.88390 0.89688 0.88972 0.89762 0.90303 0.98143 0.95203 0.92951 0.92472 0.88120 0.75685 0.84120 0.85988 0.86311 0.86092 0.90741 0.90934 0.92394 0.92127 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.14 14.32 29.02 0.42 -2.72 16 2 C -0.18 -3.32 7.41 -36.02 -0.27 -3.59 16 3 C 0.08 1.68 5.29 -4.98 -0.03 1.66 16 4 N -0.51 -10.98 4.40 -238.96 -1.05 -12.03 16 5 C 0.19 4.86 4.58 -4.97 -0.02 4.84 16 6 C -0.50 -14.02 8.68 -34.44 -0.30 -14.31 16 7 H 0.06 1.76 7.30 -52.48 -0.38 1.38 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16 10 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.03 0.58 5.29 -4.97 -0.03 0.56 16 15 C 0.51 8.26 7.36 -10.99 -0.08 8.18 16 16 O -0.50 -9.59 11.72 5.55 0.07 -9.53 16 17 N -0.68 -8.55 4.79 -9.86 -0.05 -8.60 16 18 C 0.16 2.05 6.30 -83.69 -0.53 1.53 16 19 C -0.12 -1.67 8.70 -39.40 -0.34 -2.01 16 20 C -0.11 -1.24 10.04 -39.61 -0.40 -1.64 16 21 C -0.14 -1.43 10.04 -39.55 -0.40 -1.82 16 22 C -0.10 -1.02 9.67 -39.61 -0.38 -1.41 16 23 C -0.11 -1.25 5.15 -104.44 -0.54 -1.79 16 24 C -0.09 -0.73 5.46 -27.88 -0.15 -0.89 16 25 C -0.15 -1.06 9.82 37.16 0.37 -0.69 16 26 H 0.10 1.77 7.84 -52.48 -0.41 1.35 16 27 H 0.08 1.32 8.06 -52.49 -0.42 0.89 16 28 H 0.09 1.52 6.80 -52.48 -0.36 1.17 16 29 H 0.08 1.85 6.82 -51.93 -0.35 1.49 16 30 H 0.08 1.54 5.81 -51.93 -0.30 1.24 16 31 H 0.00 0.02 6.69 -51.93 -0.35 -0.32 16 32 H 0.03 0.80 7.82 -51.93 -0.41 0.40 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.06 0.87 6.37 -51.93 -0.33 0.53 16 35 H 0.10 1.60 7.87 -51.92 -0.41 1.19 16 36 H 0.41 3.93 7.04 -40.82 -0.29 3.64 16 37 H 0.14 2.18 6.15 -52.49 -0.32 1.85 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 41 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 42 H 0.07 0.65 7.41 -51.93 -0.38 0.26 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.05 0.38 7.33 -51.93 -0.38 0.00 16 LS Contribution 364.76 15.07 5.50 5.50 Total: -1.00 -32.03 364.76 -9.36 -41.39 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.77 Total: 4.81 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.78 Total: -12.62 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.36 Total: -46.37 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.07 Total: -9.53 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.03 -9.36 -41.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292272606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.797 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds