Wall clock time and date at job start Tue Mar 31 2020 08:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00162 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99868 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47023 * 90.00014 * 9 7 5 11 11 H 1.48496 * 109.47251 * 210.00457 * 9 7 5 12 12 H 1.48498 * 109.47139 * 330.00202 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46499 * 109.46840 * 299.99500 * 13 2 1 15 15 C 1.34779 * 119.99872 * 180.02562 * 14 13 2 16 16 O 1.21517 * 120.00102 * 0.02562 * 15 14 13 17 17 C 1.48154 * 119.99763 * 180.02562 * 15 14 13 18 18 C 1.39831 * 120.92634 * 359.97438 * 17 15 14 19 19 C 1.38118 * 119.00622 * 179.97438 * 18 17 15 20 20 N 1.31828 * 120.89824 * 359.97438 * 19 18 17 21 21 C 1.31796 * 122.04568 * 0.02562 * 20 19 18 22 22 C 1.50709 * 119.55187 * 179.97438 * 21 20 19 23 23 C 1.52999 * 117.49609 * 163.62296 * 22 21 20 24 24 C 1.53007 * 60.00183 * 252.51482 * 23 22 21 25 25 C 1.38171 * 120.89630 * 359.73704 * 21 20 19 26 26 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 27 27 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 28 28 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 31 31 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 32 32 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 34 34 H 0.96996 * 119.99309 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 36 36 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 37 37 H 0.97000 * 120.00420 * 0.02562 * 14 13 2 38 38 H 1.08007 * 120.49825 * 0.02562 * 18 17 15 39 39 H 1.08000 * 119.55766 * 180.02562 * 19 18 17 40 40 H 1.08998 * 115.55168 * 309.33515 * 22 21 20 41 41 H 1.08998 * 117.49989 * 359.97438 * 23 22 21 42 42 H 1.08998 * 117.49753 * 145.02668 * 23 22 21 43 43 H 1.09004 * 117.49761 * 252.51754 * 24 23 22 44 44 H 1.08997 * 117.52004 * 107.47836 * 24 23 22 45 45 H 1.08004 * 120.49798 * 180.28462 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 1.4321 0.1381 -4.8058 9 14 2.9460 -1.9996 -3.9035 10 1 2.0882 -3.2110 -3.9490 11 1 3.7379 -1.9064 -5.1562 12 1 3.8664 -2.0882 -2.7415 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8779 -0.4910 3.6695 16 8 2.5772 -1.4785 3.7809 17 6 1.3836 0.2072 4.8791 18 6 0.5782 1.3453 4.7734 19 6 0.1391 1.9646 5.9272 20 7 0.4690 1.4963 7.1145 21 6 1.2257 0.4269 7.2588 22 6 1.5688 -0.0595 8.6434 23 6 2.1086 -1.4848 8.7778 24 6 0.6888 -1.1572 9.2447 25 6 1.7046 -0.2572 6.1580 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 3.1299 -0.7209 -1.2496 33 1 1.6766 -1.7490 -1.2493 34 1 1.6670 -0.1929 -5.6868 35 1 1.6767 -1.7490 1.2492 36 1 3.1301 -0.7209 1.2494 37 1 0.9939 0.7578 2.3565 38 1 0.3030 1.7339 3.8039 39 1 -0.4837 2.8441 5.8559 40 1 1.9658 0.6955 9.3220 41 1 2.2150 -2.0709 7.8650 42 1 2.8610 -1.6678 9.5449 43 1 0.5073 -1.1246 10.3191 44 1 -0.1385 -1.5272 8.6392 45 1 2.3204 -1.1356 6.2838 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345882023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:55 Heat of formation + Delta-G solvation = 10.140654 kcal Electronic energy + Delta-G solvation = -23956.287830 eV Core-core repulsion = 20553.064123 eV Total energy + Delta-G solvation = -3403.223707 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.99167 -39.46573 -37.39820 -37.20026 -33.96100 -32.87320 -32.06652 -31.16366 -27.94336 -26.75925 -26.63771 -25.07541 -24.34679 -22.80674 -22.29309 -21.74086 -20.20489 -18.74091 -17.64324 -17.06684 -16.86113 -16.04912 -15.72032 -15.59158 -15.38594 -15.05472 -14.55385 -14.19116 -14.12528 -13.74885 -13.64107 -13.52759 -12.82492 -12.59951 -12.42463 -12.31500 -12.07786 -11.70000 -11.32040 -11.20828 -11.10929 -11.06059 -10.83860 -10.67684 -10.56885 -10.38560 -10.12674 -10.04232 -9.82330 -9.76581 -9.51747 -9.24993 -9.04956 -8.97566 -8.57252 -6.07962 -4.05605 0.45926 0.74016 2.74263 3.05691 3.28708 3.32159 3.37041 3.40520 3.58381 3.82717 4.34467 4.40114 4.42204 4.51890 4.59242 4.66120 4.74983 4.83227 5.10899 5.24069 5.26162 5.28791 5.41694 5.44009 5.47326 5.51803 5.55522 5.70670 5.75970 5.81115 6.01210 6.02064 6.09068 6.22324 6.25731 6.34538 6.52244 6.57160 6.81449 6.94987 6.98296 7.13732 7.30460 7.45551 7.61203 7.74197 8.10825 8.48427 8.95614 9.54537 11.04666 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.031095 B = 0.002690 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.262581 B =10405.574480 C =11031.474351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.130 4.130 4 C -0.002 4.002 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.124 3.876 14 N -0.710 5.710 15 C 0.550 3.450 16 O -0.534 6.534 17 C -0.078 4.078 18 C -0.148 4.148 19 C 0.102 3.898 20 N -0.466 5.466 21 C 0.154 3.846 22 C -0.109 4.109 23 C -0.174 4.174 24 C -0.161 4.161 25 C -0.115 4.115 26 H 0.030 0.970 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.019 0.981 33 H 0.014 0.986 34 H 0.263 0.737 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.400 0.600 38 H 0.141 0.859 39 H 0.164 0.836 40 H 0.124 0.876 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.884 1.718 25.043 25.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.064 4.064 3 C -0.187 4.187 4 C -0.040 4.040 5 C -0.550 4.550 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.362 5.362 15 C 0.336 3.664 16 O -0.411 6.411 17 C -0.089 4.089 18 C -0.168 4.168 19 C -0.055 4.055 20 N -0.176 5.176 21 C 0.017 3.983 22 C -0.128 4.128 23 C -0.211 4.211 24 C -0.198 4.198 25 C -0.135 4.135 26 H 0.049 0.951 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.237 0.763 38 H 0.159 0.841 39 H 0.182 0.818 40 H 0.142 0.858 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.114 0.886 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.673 1.428 25.605 25.699 hybrid contribution 0.559 -0.767 -1.213 1.540 sum -1.114 0.661 24.392 24.426 Atomic orbital electron populations 1.21791 0.94723 1.01375 1.00808 1.20706 0.95875 0.95957 0.93825 1.21786 1.00578 0.95515 1.00808 1.19595 0.96347 0.95519 0.92527 1.21059 1.31922 1.13403 0.88581 0.90379 1.25001 0.95692 0.96758 0.95989 1.69901 1.45828 1.40560 0.97901 0.86856 0.81326 0.83884 0.77687 1.20363 1.21477 1.18997 1.21743 0.99150 0.96155 0.82784 1.46093 1.52628 1.31858 1.05578 1.18167 0.80828 0.84213 0.83206 1.90775 1.37735 1.25903 1.86731 1.20471 0.98086 0.95971 0.94406 1.22398 0.97795 0.95571 1.01067 1.22738 0.97156 0.98855 0.86742 1.67264 1.11022 1.11873 1.27413 1.20322 0.93115 0.91072 0.93826 1.20763 1.05865 0.92649 0.93524 1.23151 0.97375 0.96613 1.03950 1.22983 0.94392 1.01085 1.01382 1.22112 0.99378 1.00988 0.91041 0.95135 0.90687 0.93293 0.93276 0.90690 0.95120 0.96291 0.96743 0.92757 0.91437 0.91424 0.76311 0.84150 0.81842 0.85835 0.87967 0.87785 0.88007 0.88631 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 2 C -0.06 -1.11 0.54 -154.51 -0.08 -1.19 16 3 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 4 C 0.00 -0.05 3.11 -27.88 -0.09 -0.13 16 5 C -0.51 -13.40 8.20 -34.44 -0.28 -13.68 16 6 H 0.08 2.16 5.92 -52.48 -0.31 1.85 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -26.85 13.96 55.43 0.77 -26.07 16 9 Si 0.87 21.21 27.47 -169.99 -4.67 16.54 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 13 C 0.12 2.00 4.56 -4.04 -0.02 1.98 16 14 N -0.71 -9.56 4.92 -61.15 -0.30 -9.87 16 15 C 0.55 7.93 7.80 -12.19 -0.10 7.84 16 16 O -0.53 -9.48 16.45 5.35 0.09 -9.39 16 17 C -0.08 -0.93 5.91 -104.65 -0.62 -1.55 16 18 C -0.15 -1.39 9.62 -39.03 -0.38 -1.77 16 19 C 0.10 0.93 11.17 -17.60 -0.20 0.73 16 20 N -0.47 -5.09 10.25 -9.52 -0.10 -5.18 16 21 C 0.15 1.63 6.46 -82.63 -0.53 1.10 16 22 C -0.11 -0.91 6.22 -91.76 -0.57 -1.48 16 23 C -0.17 -1.21 9.79 -26.73 -0.26 -1.47 16 24 C -0.16 -1.14 10.23 -26.72 -0.27 -1.42 16 25 C -0.11 -1.31 8.93 -39.02 -0.35 -1.66 16 26 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 27 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 31 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 32 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 33 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.40 4.48 4.31 -40.82 -0.18 4.30 16 38 H 0.14 1.00 6.54 -52.48 -0.34 0.66 16 39 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.10 0.77 6.38 -51.93 -0.33 0.44 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.15 1.66 5.93 -52.48 -0.31 1.35 16 LS Contribution 360.20 15.07 5.43 5.43 Total: -1.00 -31.56 360.20 -8.63 -40.19 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.61 Total: 2.98 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -3.24 Total: -14.63 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.38 Total: -41.12 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.56 -8.63 -40.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345882023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.329 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds