Wall clock time and date at job start Tue Mar 31 2020 08:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46842 * 2 1 4 4 C 1.52995 * 109.46811 * 119.99838 * 2 1 3 5 5 C 1.53004 * 115.55236 * 280.79253 * 4 2 1 6 6 C 1.53080 * 117.51003 * 135.07574 * 4 2 1 7 7 C 1.53000 * 117.49822 * 66.46703 * 4 2 1 8 8 H 1.09002 * 117.49599 * 214.99437 * 7 4 2 9 9 N 1.46493 * 117.49950 * 0.02562 * 7 4 2 10 10 C 1.34777 * 119.99759 * 209.09037 * 9 7 4 11 11 O 1.21579 * 120.00366 * 359.97438 * 10 9 7 12 12 N 1.34786 * 119.99923 * 179.97438 * 10 9 7 13 13 C 1.39240 * 119.99722 * 184.98242 * 12 10 9 14 14 C 1.39483 * 119.82662 * 144.18592 * 13 12 10 15 15 C 1.36376 * 120.16775 * 179.72140 * 14 13 12 16 16 C 1.40869 * 119.82631 * 0.57110 * 15 14 13 17 17 C 1.41156 * 120.16695 * 179.72493 * 16 15 14 18 18 H 1.07998 * 120.00188 * 148.56827 * 17 16 15 19 19 C 1.39894 * 119.99566 * 328.56152 * 17 16 15 20 20 N 1.30889 * 119.99401 * 167.43813 * 19 17 16 21 21 Si 1.86794 * 120.00324 * 347.44797 * 19 17 16 22 22 H 1.48493 * 109.47480 * 92.52341 * 21 19 17 23 23 H 1.48502 * 109.47237 * 212.52924 * 21 19 17 24 24 H 1.48500 * 109.46777 * 332.52272 * 21 19 17 25 25 C 1.40870 * 119.67293 * 359.70130 * 16 15 14 26 26 C 1.36375 * 119.82716 * 0.02562 * 25 16 15 27 27 H 1.09002 * 109.47143 * 300.00062 * 1 2 3 28 28 H 1.09003 * 109.46940 * 60.00090 * 1 2 3 29 29 H 1.08994 * 109.47218 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47143 * 239.99938 * 2 1 3 31 31 H 1.08999 * 109.47339 * 63.04979 * 3 2 1 32 32 H 1.09000 * 109.47195 * 183.04589 * 3 2 1 33 33 H 1.08998 * 109.47094 * 303.04455 * 3 2 1 34 34 H 1.09000 * 109.47233 * 205.67332 * 5 4 2 35 35 H 1.09003 * 109.46819 * 325.67379 * 5 4 2 36 36 H 1.08999 * 109.46865 * 85.66947 * 5 4 2 37 37 H 1.09004 * 117.49398 * 145.03651 * 6 4 2 38 38 H 1.09001 * 117.51472 * 359.97438 * 6 4 2 39 39 H 0.96998 * 120.00160 * 29.07947 * 9 7 4 40 40 H 0.96997 * 119.99432 * 5.26255 * 12 10 9 41 41 H 1.07997 * 119.91871 * 359.97438 * 14 13 12 42 42 H 1.07997 * 120.09078 * 180.24998 * 15 14 13 43 43 H 0.97002 * 119.99208 * 180.02562 * 20 19 17 44 44 H 1.08007 * 120.09076 * 179.97438 * 25 16 15 45 45 H 1.08003 * 119.91668 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 2.0162 0.0990 2.5407 6 6 3.1819 -1.7247 1.0698 7 6 1.7645 -2.2221 1.3604 8 1 1.5664 -2.6252 2.3535 9 7 1.0332 -2.8587 0.2622 10 6 0.2642 -3.9393 0.5019 11 8 0.1777 -4.3860 1.6293 12 7 -0.4091 -4.5248 -0.5084 13 6 -1.2839 -5.5756 -0.2452 14 6 -2.4594 -5.7016 -0.9854 15 6 -3.3184 -6.7314 -0.7373 16 6 -3.0218 -7.6622 0.2776 17 6 -3.9086 -8.7275 0.5443 18 1 -3.5258 -9.6727 0.8998 19 6 -5.2835 -8.5588 0.3483 20 7 -6.0779 -9.5990 0.3548 21 14 -5.9854 -6.8491 0.0770 22 1 -6.0491 -6.5655 -1.3792 23 1 -7.3511 -6.7771 0.6557 24 1 -5.1138 -5.8455 0.7391 25 6 -1.8354 -7.5250 1.0246 26 6 -0.9834 -6.4933 0.7612 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.7219 1.9404 0.9160 32 1 3.1286 1.4431 -0.0546 33 1 1.6327 1.9719 -0.8614 34 1 2.7719 -0.2825 3.2273 35 1 2.2274 1.1435 2.3116 36 1 1.0322 0.0202 3.0030 37 1 3.9162 -1.8002 1.8719 38 1 3.5696 -1.8713 0.0616 39 1 1.1023 -2.5025 -0.6373 40 1 -0.2811 -4.2167 -1.4192 41 1 -2.6880 -4.9842 -1.7596 42 1 -4.2263 -6.8301 -1.3138 43 1 -7.0311 -9.4820 0.2186 44 1 -1.6014 -8.2346 1.8045 45 1 -0.0736 -6.3865 1.3333 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459235878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:05 Heat of formation + Delta-G solvation = -7.211099 kcal Electronic energy + Delta-G solvation = -24271.969345 eV Core-core repulsion = 20867.993210 eV Total energy + Delta-G solvation = -3403.976136 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62003 -40.20457 -39.10504 -36.16588 -35.17849 -34.84142 -33.53137 -31.71821 -31.21058 -29.12641 -27.81462 -26.62949 -24.07224 -23.55609 -23.20322 -22.32242 -21.81642 -19.76187 -19.35629 -19.16261 -18.36207 -17.27523 -16.79192 -16.41119 -16.14421 -15.73427 -15.42286 -15.08631 -14.85063 -14.66119 -14.55849 -14.29788 -14.17554 -14.12420 -13.76692 -13.75713 -13.33772 -12.95441 -12.78527 -12.64315 -12.43468 -12.31143 -12.23608 -11.98631 -11.90494 -11.71069 -11.55833 -11.43742 -11.31740 -11.19552 -10.68803 -10.58908 -9.61175 -9.58651 -8.90100 -8.84232 -6.43204 0.66727 0.87623 1.25661 1.41047 1.50607 1.65517 2.07037 2.14548 2.65007 2.91612 3.26229 3.50015 3.65190 3.82120 3.90310 4.05149 4.25165 4.32800 4.38273 4.44175 4.57273 4.65348 4.75940 4.85038 4.91733 4.93254 4.95481 4.95819 4.99537 5.02348 5.07186 5.11962 5.17961 5.23712 5.36917 5.39549 5.46007 5.48440 5.56981 5.61679 5.69813 5.84472 5.95396 6.11584 6.26638 6.39358 6.73837 6.82540 7.11057 7.62516 8.23019 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.027186 B = 0.003017 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.680059 B = 9279.439311 C = 9741.318761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.056 4.056 3 C -0.145 4.145 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.169 4.169 7 C 0.084 3.916 8 H 0.109 0.891 9 N -0.694 5.694 10 C 0.697 3.303 11 O -0.622 6.622 12 N -0.659 5.659 13 C 0.042 3.958 14 C -0.090 4.090 15 C -0.231 4.231 16 C 0.065 3.935 17 C -0.481 4.481 18 H 0.053 0.947 19 C 0.043 3.957 20 N -0.857 5.857 21 Si 0.970 3.030 22 H -0.248 1.248 23 H -0.282 1.282 24 H -0.257 1.257 25 C -0.209 4.209 26 C -0.080 4.080 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.411 0.589 40 H 0.416 0.584 41 H 0.141 0.859 42 H 0.108 0.892 43 H 0.293 0.707 44 H 0.097 0.903 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.674 24.085 -4.760 29.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.074 4.074 3 C -0.202 4.202 4 C -0.118 4.118 5 C -0.179 4.179 6 C -0.208 4.208 7 C -0.023 4.023 8 H 0.127 0.873 9 N -0.348 5.348 10 C 0.398 3.602 11 O -0.502 6.502 12 N -0.307 5.307 13 C -0.052 4.052 14 C -0.110 4.110 15 C -0.251 4.251 16 C 0.063 3.937 17 C -0.512 4.512 18 H 0.072 0.928 19 C -0.170 4.170 20 N -0.485 5.485 21 Si 0.793 3.207 22 H -0.173 1.173 23 H -0.209 1.209 24 H -0.181 1.181 25 C -0.229 4.229 26 C -0.100 4.100 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.248 0.752 40 H 0.254 0.746 41 H 0.159 0.841 42 H 0.126 0.874 43 H 0.103 0.897 44 H 0.115 0.885 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 15.368 23.541 -3.760 28.363 hybrid contribution -0.532 -0.158 -0.451 0.715 sum 14.837 23.382 -4.211 28.011 Atomic orbital electron populations 1.21881 0.95429 1.01559 1.01838 1.20614 0.95071 0.96746 0.94974 1.21880 1.01360 0.94693 1.02245 1.22163 1.01748 0.89757 0.98175 1.21495 1.01692 1.00564 0.94177 1.23832 0.91208 1.01508 1.04256 1.21550 0.95494 0.94182 0.91074 0.87313 1.44239 1.49326 1.29304 1.11979 1.16099 0.79266 0.80575 0.84257 1.90887 1.69040 1.66908 1.23352 1.41828 1.44518 1.34768 1.09593 1.17032 0.92903 0.91855 1.03411 1.20444 0.91747 0.98218 1.00607 1.20755 1.02000 1.00547 1.01759 1.17902 0.93066 0.92128 0.90646 1.19419 0.92105 0.98838 1.40801 0.92832 1.26844 0.97031 1.02405 0.90768 1.69722 1.06876 1.33532 1.38332 0.85454 0.76664 0.78418 0.80126 1.17276 1.20860 1.18130 1.20831 0.98431 1.01034 1.02641 1.20655 0.98943 0.92949 0.97467 0.93338 0.91730 0.93615 0.90495 0.92004 0.91983 0.92115 0.91907 0.89818 0.93191 0.87279 0.87349 0.75207 0.74623 0.84125 0.87407 0.89675 0.88462 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.97 71.98 0.65 -1.55 16 2 C -0.06 -0.65 2.25 -10.79 -0.02 -0.68 16 3 C -0.14 -1.34 8.59 71.98 0.62 -0.73 16 4 C -0.12 -1.66 1.77 -52.15 -0.09 -1.76 16 5 C -0.12 -1.63 9.61 71.98 0.69 -0.94 16 6 C -0.17 -2.35 9.75 30.62 0.30 -2.05 16 7 C 0.08 1.71 5.99 45.00 0.27 1.98 16 8 H 0.11 2.91 7.37 -2.39 -0.02 2.89 16 9 N -0.69 -14.86 3.87 -457.81 -1.77 -16.63 16 10 C 0.70 22.10 8.40 179.05 1.50 23.60 16 11 O -0.62 -26.08 13.30 -3.97 -0.05 -26.13 16 12 N -0.66 -19.71 5.31 -316.78 -1.68 -21.39 16 13 C 0.04 1.68 6.30 38.56 0.24 1.93 16 14 C -0.09 -3.55 9.90 22.14 0.22 -3.33 16 15 C -0.23 -10.82 6.96 22.48 0.16 -10.67 16 16 C 0.07 3.47 5.12 -21.27 -0.11 3.36 16 17 C -0.48 -28.01 9.59 23.39 0.22 -27.79 16 18 H 0.05 3.36 8.06 -2.91 -0.02 3.34 16 19 C 0.04 2.35 5.46 85.23 0.47 2.81 16 20 N -0.86 -48.29 13.93 21.82 0.30 -47.99 16 21 Si 0.97 43.68 24.41 68.60 1.67 45.36 16 22 H -0.25 -10.13 6.66 99.48 0.66 -9.47 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 24 H -0.26 -12.07 6.70 99.48 0.67 -11.40 16 25 C -0.21 -10.59 9.74 22.48 0.22 -10.37 16 26 C -0.08 -3.67 8.61 22.13 0.19 -3.48 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.04 0.83 6.24 -2.39 -0.01 0.82 16 30 H 0.08 0.76 7.35 -2.39 -0.02 0.75 16 31 H 0.06 0.58 6.12 -2.39 -0.01 0.57 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.78 7.90 -2.39 -0.02 0.76 16 35 H 0.08 0.86 5.55 -2.39 -0.01 0.85 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.11 1.36 8.05 -2.39 -0.02 1.35 16 38 H 0.11 1.25 8.09 -2.39 -0.02 1.23 16 39 H 0.41 6.04 7.28 -92.71 -0.68 5.37 16 40 H 0.42 8.62 8.84 -92.71 -0.82 7.80 16 41 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 42 H 0.11 4.93 4.45 -2.91 -0.01 4.91 16 43 H 0.29 14.79 8.30 -92.71 -0.77 14.03 16 44 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 45 H 0.11 5.24 6.21 -2.91 -0.02 5.23 16 Total: -1.00 -69.77 354.94 3.43 -66.34 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -0.56 Total: 30.10 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: 5.52 Total: -29.65 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -3.15 Total: -86.01 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.05 Total: -26.13 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.67 Total: 45.36 kcal Total: -69.77 3.43 -66.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459235878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.124 kcal (2) G-P(sol) polarization free energy of solvation -69.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds