Wall clock time and date at job start Tue Mar 31 2020 08:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47350 * 2 1 4 4 C 1.38352 * 120.34974 * 270.02273 * 3 2 1 5 5 N 1.31917 * 121.08083 * 179.97438 * 4 3 2 6 6 C 1.31694 * 121.87979 * 359.72487 * 5 4 3 7 7 C 1.39524 * 120.56784 * 0.53723 * 6 5 4 8 8 C 1.47838 * 120.56370 * 179.75813 * 7 6 5 9 9 O 1.21552 * 119.99839 * 40.97632 * 8 7 6 10 10 N 1.34779 * 119.99861 * 220.71525 * 8 7 6 11 11 C 1.46921 * 120.63053 * 5.72373 * 10 8 7 12 12 C 1.53620 * 108.54265 * 126.37226 * 11 10 8 13 13 C 1.53041 * 109.24071 * 54.85861 * 12 11 10 14 14 C 1.53001 * 109.46523 * 178.49167 * 13 12 11 15 15 C 1.50701 * 109.46919 * 295.06914 * 14 13 12 16 16 H 1.08001 * 119.99904 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00067 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00072 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 119.99989 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47374 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47004 * 120.00426 * 19 17 15 22 22 H 1.48498 * 109.47292 * 240.00372 * 19 17 15 23 23 C 1.53041 * 109.53747 * 298.51101 * 13 12 11 24 24 C 1.46923 * 120.62958 * 186.01487 * 10 8 7 25 25 C 1.38359 * 120.34733 * 89.99931 * 3 2 1 26 26 H 1.09000 * 109.47283 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47323 * 300.00474 * 1 2 3 28 28 H 1.09004 * 109.46716 * 59.99729 * 1 2 3 29 29 H 1.09005 * 109.47081 * 239.99555 * 2 1 3 30 30 H 1.09004 * 109.46716 * 120.00271 * 2 1 3 31 31 H 1.07998 * 119.45584 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.71809 * 180.27645 * 6 5 4 33 33 H 1.08998 * 109.59175 * 246.20484 * 11 10 8 34 34 H 1.09000 * 109.58665 * 6.63905 * 11 10 8 35 35 H 1.09000 * 109.63776 * 294.87118 * 12 11 10 36 36 H 1.08995 * 109.43705 * 174.72699 * 12 11 10 37 37 H 1.09001 * 109.45247 * 58.52428 * 13 12 11 38 38 H 1.09003 * 109.46806 * 55.06277 * 14 13 12 39 39 H 1.08991 * 109.47412 * 175.06548 * 14 13 12 40 40 H 0.96990 * 120.00208 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.50115 * 301.41518 * 23 13 12 42 42 H 1.09005 * 109.50047 * 181.31410 * 23 13 12 43 43 H 1.09007 * 109.58548 * 353.36495 * 24 10 8 44 44 H 1.08991 * 109.59236 * 113.65007 * 24 10 8 45 45 H 1.08005 * 120.85290 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2650 2.0800 -1.1939 5 7 2.7042 3.3238 -1.2107 6 6 2.9357 3.9948 -0.1014 7 6 2.7313 3.3993 1.1437 8 6 2.9962 4.1509 2.3889 9 8 2.6726 5.3194 2.4741 10 7 3.5918 3.5388 3.4316 11 6 4.0962 2.1648 3.3046 12 6 5.5715 2.1444 3.7323 13 6 5.6966 2.7318 5.1400 14 6 7.1592 2.6794 5.5861 15 6 7.5948 1.2422 5.7120 16 1 6.8980 0.4459 5.4958 17 6 8.8829 0.9439 6.1031 18 7 9.7313 1.9137 6.3668 19 14 9.4225 -0.8374 6.2598 20 1 8.2890 -1.7307 5.9100 21 1 10.5574 -1.0939 5.3369 22 1 9.8505 -1.1040 7.6566 23 6 5.2177 4.1853 5.1324 24 6 3.7434 4.2308 4.7188 25 6 2.2654 2.0799 1.1940 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.0840 1.5679 -2.1274 32 1 3.2908 5.0133 -0.1560 33 1 3.5173 1.5020 3.9478 34 1 4.0103 1.8384 2.2682 35 1 6.1630 2.7390 3.0361 36 1 5.9346 1.1167 3.7334 37 1 5.0852 2.1516 5.8311 38 1 7.7824 3.1846 4.8482 39 1 7.2629 3.1763 6.5506 40 1 10.6372 1.7039 6.6423 41 1 5.8125 4.7607 4.4230 42 1 5.3290 4.6103 6.1300 43 1 3.4246 5.2681 4.6158 44 1 3.1343 3.7347 5.4744 45 1 2.0915 1.5894 2.1405 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517237715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:05 Heat of formation + Delta-G solvation = -22.494129 kcal Electronic energy + Delta-G solvation = -24620.254485 eV Core-core repulsion = 21215.615627 eV Total energy + Delta-G solvation = -3404.638858 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.02274 -39.47804 -37.37607 -35.05339 -34.19726 -32.89417 -31.91197 -30.58733 -30.02254 -28.13285 -25.44468 -24.66107 -24.03598 -23.08188 -22.30487 -21.44094 -19.93190 -18.86264 -17.38040 -17.21076 -16.72919 -16.35150 -15.88616 -15.12004 -14.76960 -14.57894 -14.19096 -14.13905 -13.88764 -13.78472 -13.43220 -13.31643 -12.96743 -12.91510 -12.80767 -12.45807 -12.26244 -11.89926 -11.82850 -11.40484 -11.24733 -11.03253 -10.88165 -10.76023 -10.52453 -10.20505 -10.19976 -9.94751 -9.72168 -9.52283 -9.29928 -9.21309 -9.00175 -8.45370 -8.38963 -6.03806 -4.06113 0.54998 0.93028 2.65695 2.98755 3.26873 3.35023 3.37188 3.54973 4.09201 4.35307 4.38101 4.41480 4.56424 4.64672 4.71935 4.97514 5.03776 5.07673 5.16464 5.30213 5.34052 5.39662 5.44609 5.47768 5.52191 5.55927 5.58723 5.68309 5.76935 5.84098 5.91619 5.92671 5.99209 6.28042 6.31457 6.35874 6.45937 6.60694 6.89042 6.93278 7.05332 7.40608 7.62710 7.66420 7.76895 7.95676 8.10226 8.37579 9.00547 9.57963 11.07486 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.003643 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.615262 B = 7683.131901 C = 8775.210835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.141 4.141 4 C 0.118 3.882 5 N -0.483 5.483 6 C 0.146 3.854 7 C -0.171 4.171 8 C 0.562 3.438 9 O -0.540 6.540 10 N -0.596 5.596 11 C 0.095 3.905 12 C -0.118 4.118 13 C -0.081 4.081 14 C 0.027 3.973 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.129 4.129 24 C 0.112 3.888 25 C -0.043 4.043 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.417 -2.571 -11.619 21.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.143 4.143 4 C -0.040 4.040 5 N -0.191 5.191 6 C -0.012 4.012 7 C -0.176 4.176 8 C 0.349 3.651 9 O -0.419 6.419 10 N -0.329 5.329 11 C -0.028 4.028 12 C -0.156 4.156 13 C -0.099 4.099 14 C -0.010 4.010 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.168 4.168 24 C -0.010 4.010 25 C -0.069 4.069 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.175 0.825 32 H 0.181 0.819 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.254 -1.504 -12.304 21.245 hybrid contribution 0.431 -1.453 1.020 1.827 sum -16.822 -2.957 -11.284 20.471 Atomic orbital electron populations 1.21770 0.94423 1.02075 1.02302 1.20500 0.96306 0.91338 1.03731 1.20877 1.01411 0.98244 0.93759 1.22865 0.93038 0.90440 0.97611 1.67768 1.12011 1.08480 1.30799 1.22893 0.92830 0.99475 0.85967 1.20980 1.05295 0.95635 0.95701 1.18106 0.77946 0.86239 0.82793 1.90771 1.53058 1.15786 1.82277 1.48080 1.56979 1.15889 1.11906 1.22344 0.97016 0.81681 1.01714 1.21982 0.92549 1.03186 0.97904 1.21202 1.00716 0.92827 0.95200 1.19126 0.88491 0.96993 0.96365 1.21260 0.96481 0.92374 1.45380 0.92571 1.25026 0.96916 0.96965 0.95560 1.69969 1.05439 1.31365 1.46606 0.86594 0.78643 0.85396 0.77701 1.19774 1.21083 1.21062 1.22031 0.93893 0.99261 1.01575 1.21732 0.98011 0.98126 0.83086 1.21766 0.93704 0.92401 0.99002 0.91985 0.92522 0.92486 0.90313 0.90358 0.82493 0.81895 0.91275 0.90060 0.92193 0.89619 0.92299 0.96624 0.96536 0.93063 0.91946 0.90955 0.89453 0.91530 0.83993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.16 0.37 -0.50 16 2 C -0.08 -0.51 6.08 -27.88 -0.17 -0.68 16 3 C -0.14 -1.26 5.15 -104.54 -0.54 -1.79 16 4 C 0.12 1.13 10.85 -17.47 -0.19 0.94 16 5 N -0.48 -5.87 10.35 -12.91 -0.13 -6.00 16 6 C 0.15 1.86 10.82 -17.13 -0.19 1.67 16 7 C -0.17 -2.18 5.10 -104.82 -0.53 -2.71 16 8 C 0.56 8.44 7.33 -12.33 -0.09 8.35 16 9 O -0.54 -9.67 16.37 5.32 0.09 -9.58 16 10 N -0.60 -8.52 2.97 -173.63 -0.51 -9.04 16 11 C 0.09 1.25 4.98 -3.49 -0.02 1.23 16 12 C -0.12 -1.99 5.21 -26.39 -0.14 -2.12 16 13 C -0.08 -1.51 2.10 -90.58 -0.19 -1.70 16 14 C 0.03 0.66 4.45 -27.88 -0.12 0.54 16 15 C -0.52 -13.75 8.39 -34.44 -0.29 -14.04 16 16 H 0.06 1.43 7.06 -52.49 -0.37 1.06 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 18 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 19 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.13 -2.12 5.36 -26.61 -0.14 -2.27 16 24 C 0.11 1.62 6.44 -3.71 -0.02 1.59 16 25 C -0.04 -0.44 7.20 -38.87 -0.28 -0.72 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.16 1.98 8.06 -52.48 -0.42 1.56 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.96 4.78 -51.93 -0.25 0.71 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.52 6.91 -51.93 -0.36 1.17 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.14 1.27 6.74 -52.48 -0.35 0.92 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -31.59 361.29 -9.21 -40.80 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -7.17 Total: -1.24 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -2.64 Total: -10.75 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.09 Total: -40.61 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.59 -9.21 -40.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517237715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.309 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds