Wall clock time and date at job start Tue Mar 31 2020 08:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38365 * 119.85506 * 269.73146 * 3 2 1 5 5 C 1.37942 * 120.14795 * 179.72415 * 4 3 2 6 6 C 1.39602 * 119.85195 * 0.56433 * 5 4 3 7 7 C 1.47804 * 120.14654 * 179.68575 * 6 5 4 8 8 O 1.21578 * 119.99701 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00264 * 0.02562 * 7 6 5 10 10 N 1.40092 * 120.00430 * 180.02562 * 9 7 6 11 11 C 1.28012 * 120.00593 * 179.97438 * 10 9 7 12 12 C 1.50695 * 120.00461 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46953 * 0.02562 * 12 11 10 14 14 C 1.52999 * 109.47083 * 120.00140 * 12 11 10 15 15 C 1.53000 * 109.47641 * 240.00523 * 12 11 10 16 16 C 1.50703 * 109.47448 * 180.02562 * 15 12 11 17 17 H 1.07997 * 119.99703 * 359.97438 * 16 15 12 18 18 C 1.37877 * 120.00185 * 179.97438 * 16 15 12 19 19 N 1.31519 * 119.99740 * 359.97438 * 18 16 15 20 20 Si 1.86790 * 120.00102 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47371 * 89.99959 * 20 18 16 22 22 H 1.48500 * 109.47083 * 209.99862 * 20 18 16 23 23 H 1.48502 * 109.47125 * 329.99937 * 20 18 16 24 24 C 1.39589 * 119.70687 * 359.70800 * 6 5 4 25 25 C 1.37953 * 119.85046 * 359.97438 * 24 6 5 26 26 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 31 31 H 1.07998 * 119.92037 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.07651 * 180.25193 * 5 4 3 33 33 H 0.97005 * 119.99910 * 0.02562 * 9 7 6 34 34 H 1.08004 * 119.99626 * 0.02562 * 11 10 9 35 35 H 1.08993 * 109.47495 * 59.99901 * 13 12 11 36 36 H 1.09003 * 109.46854 * 179.97438 * 13 12 11 37 37 H 1.09002 * 109.47322 * 299.99391 * 13 12 11 38 38 H 1.09002 * 109.47161 * 60.00197 * 14 12 11 39 39 H 1.09003 * 109.47280 * 179.97438 * 14 12 11 40 40 H 1.08998 * 109.47472 * 300.00394 * 14 12 11 41 41 H 1.09002 * 109.46691 * 299.99857 * 15 12 11 42 42 H 1.08995 * 109.47132 * 59.99825 * 15 12 11 43 43 H 0.97001 * 120.00100 * 180.02562 * 19 18 16 44 44 H 1.07998 * 120.07757 * 179.97438 * 24 6 5 45 45 H 1.07998 * 119.92798 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2673 2.0683 -1.2000 5 6 2.7218 3.3706 -1.2071 6 6 2.9560 4.0315 0.0001 7 6 3.4496 5.4247 0.0001 8 8 3.6531 5.9974 1.0530 9 7 3.6742 6.0601 -1.1670 10 7 4.1425 7.3804 -1.1671 11 6 4.3563 7.9837 -2.2757 12 6 4.8596 9.4042 -2.2757 13 6 5.0305 9.8846 -0.8331 14 6 6.2074 9.4677 -2.9970 15 6 3.8524 10.3022 -2.9968 16 6 4.3561 11.7226 -2.9973 17 1 5.2999 11.9610 -2.5297 18 6 3.6119 12.7177 -3.5948 19 7 2.4627 12.4273 -4.1647 20 14 4.2358 14.4784 -3.5948 21 1 5.0615 14.7110 -4.8070 22 1 3.0815 15.4126 -3.5954 23 1 5.0605 14.7113 -2.3820 24 6 2.7223 3.3705 1.2072 25 6 2.2615 2.0702 1.2001 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.0906 1.5541 -2.1332 32 1 2.9009 3.8763 -2.1444 33 1 3.5115 5.6032 -2.0071 34 1 4.1752 7.4750 -3.2110 35 1 5.7482 9.2449 -0.3197 36 1 5.3950 10.9119 -0.8332 37 1 4.0705 9.8394 -0.3189 38 1 6.0860 9.1252 -4.0246 39 1 6.5713 10.4952 -2.9974 40 1 6.9250 8.8279 -2.4833 41 1 3.7310 9.9598 -4.0245 42 1 2.8923 10.2570 -2.4829 43 1 1.9393 13.1273 -4.5853 44 1 2.9018 3.8759 2.1446 45 1 2.0807 1.5576 2.1332 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755554483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:06 Heat of formation + Delta-G solvation = 6.498502 kcal Electronic energy + Delta-G solvation = -23262.799069 eV Core-core repulsion = 19859.417426 eV Total energy + Delta-G solvation = -3403.381643 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31998 -38.76360 -37.50688 -35.27067 -34.49108 -32.55952 -31.58712 -30.91739 -29.53258 -27.05552 -26.37482 -25.12368 -23.99335 -22.98897 -22.37847 -21.45813 -20.37244 -18.79478 -17.35885 -16.89543 -16.24406 -15.95002 -15.67041 -15.15889 -15.04398 -14.59786 -14.21781 -14.02577 -13.74148 -13.68659 -13.61759 -13.25568 -12.85750 -12.78914 -12.25668 -12.05967 -11.79723 -11.68591 -11.45529 -11.31795 -11.21681 -10.98698 -10.91132 -10.81643 -10.57992 -10.25929 -10.11830 -9.93567 -9.60923 -9.41864 -9.32122 -9.07538 -8.97088 -8.46802 -8.35869 -6.00771 -4.01661 0.54832 1.05086 2.28220 2.65037 2.97912 3.32593 3.39662 3.42873 3.68320 4.25696 4.36919 4.45774 4.51720 4.62300 4.74882 4.91174 5.00929 5.09208 5.15434 5.15941 5.32586 5.36585 5.46557 5.48915 5.55604 5.67212 5.78503 5.88098 5.95655 5.96697 6.03149 6.09144 6.20422 6.39315 6.54680 6.56249 6.66205 6.81224 7.04943 7.10120 7.21743 7.27699 7.60023 7.68398 7.80361 7.97748 8.38235 8.62035 9.02470 9.61483 11.10815 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.030028 B = 0.002283 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.226004 B =12262.042961 C =12560.822601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.059 4.059 4 C -0.125 4.125 5 C -0.084 4.084 6 C -0.132 4.132 7 C 0.574 3.426 8 O -0.506 6.506 9 N -0.589 5.589 10 N -0.248 5.248 11 C 0.109 3.891 12 C -0.014 4.014 13 C -0.119 4.119 14 C -0.123 4.123 15 C 0.039 3.961 16 C -0.510 4.510 17 H 0.063 0.937 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.273 1.273 24 C -0.054 4.054 25 C -0.126 4.126 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.377 0.623 34 H 0.101 0.899 35 H 0.038 0.962 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.035 0.965 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.260 0.740 44 H 0.138 0.862 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.724 -25.064 4.619 25.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.060 4.060 4 C -0.143 4.143 5 C -0.103 4.103 6 C -0.136 4.136 7 C 0.361 3.639 8 O -0.380 6.380 9 N -0.330 5.330 10 N -0.049 5.049 11 C -0.106 4.106 12 C -0.017 4.017 13 C -0.176 4.176 14 C -0.181 4.181 15 C 0.001 3.999 16 C -0.548 4.548 17 H 0.081 0.919 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.198 1.198 24 C -0.073 4.073 25 C -0.144 4.144 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.215 0.785 34 H 0.118 0.882 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.054 0.946 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.156 0.844 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.753 -24.646 6.309 25.452 hybrid contribution -0.073 0.511 -1.580 1.662 sum -0.825 -24.135 4.730 24.608 Atomic orbital electron populations 1.21757 0.94339 1.01934 1.02514 1.20618 0.96471 0.92303 1.03205 1.20154 0.96368 0.96269 0.93167 1.20961 1.00806 0.94588 0.97927 1.21325 0.97105 0.94893 0.96943 1.19898 1.05211 0.93779 0.94733 1.17978 0.77643 0.85262 0.82989 1.90783 1.49560 1.67057 1.30574 1.47026 1.66150 1.11313 1.08530 1.74626 1.12053 0.91504 1.26745 1.26725 0.93010 0.97961 0.92860 1.19830 0.97176 0.86624 0.98088 1.21607 1.01238 1.00694 0.94055 1.21718 0.94780 1.02671 0.98949 1.19139 0.92879 0.93112 0.94745 1.21169 1.05784 0.92135 1.35700 0.91937 1.25008 0.94948 0.98983 0.95570 1.69963 1.12957 1.33126 1.37495 0.86606 0.78332 0.84753 0.78401 1.20752 1.21376 1.19799 1.21282 0.94381 0.93877 0.97748 1.21032 1.00781 0.94633 0.97909 0.92378 0.92358 0.92198 0.90708 0.90732 0.85368 0.85683 0.78492 0.88218 0.94326 0.91720 0.92994 0.93166 0.90547 0.94587 0.96248 0.96243 0.93048 0.84374 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.89 37.16 0.37 -0.40 16 2 C -0.09 -0.48 6.06 -27.89 -0.17 -0.65 16 3 C -0.06 -0.46 5.14 -104.53 -0.54 -1.00 16 4 C -0.12 -1.00 9.68 -39.64 -0.38 -1.38 16 5 C -0.08 -0.80 9.54 -39.18 -0.37 -1.17 16 6 C -0.13 -1.62 5.87 -104.97 -0.62 -2.23 16 7 C 0.57 9.30 7.89 -12.35 -0.10 9.20 16 8 O -0.51 -10.24 16.68 5.30 0.09 -10.15 16 9 N -0.59 -9.14 6.20 30.52 0.19 -8.96 16 10 N -0.25 -4.64 9.70 32.67 0.32 -4.33 16 11 C 0.11 1.93 9.56 -13.87 -0.13 1.80 16 12 C -0.01 -0.29 0.75 -155.66 -0.12 -0.40 16 13 C -0.12 -2.41 7.45 37.16 0.28 -2.14 16 14 C -0.12 -2.17 8.20 37.16 0.30 -1.86 16 15 C 0.04 0.96 4.02 -27.88 -0.11 0.85 16 16 C -0.51 -13.48 7.65 -34.44 -0.26 -13.74 16 17 H 0.06 1.59 5.68 -52.49 -0.30 1.30 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -26.17 13.29 55.43 0.74 -25.44 16 20 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 C -0.05 -0.60 9.60 -39.18 -0.38 -0.97 16 25 C -0.13 -1.08 9.68 -39.64 -0.38 -1.46 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 30 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 31 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.13 0.95 6.41 -52.49 -0.34 0.61 16 33 H 0.38 4.42 6.67 -182.60 -1.22 3.20 16 34 H 0.10 1.48 8.00 -52.48 -0.42 1.06 16 35 H 0.04 0.74 8.06 -51.93 -0.42 0.32 16 36 H 0.06 1.34 6.62 -51.93 -0.34 0.99 16 37 H 0.05 1.13 8.06 -51.93 -0.42 0.71 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.43 6.62 -51.93 -0.34 1.08 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.14 1.56 7.65 -52.49 -0.40 1.16 16 45 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -32.89 374.52 -8.73 -41.62 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -7.98 Total: -0.41 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -2.71 Total: -14.13 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 1.24 Total: -38.72 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.89 -8.73 -41.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755554483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.117 kcal (2) G-P(sol) polarization free energy of solvation -32.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds