Wall clock time and date at job start Tue Mar 31 2020 08:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99864 * 2 1 4 4 C 1.53000 * 109.46827 * 124.99884 * 3 2 1 5 5 C 1.53007 * 109.46976 * 174.84915 * 4 3 2 6 6 H 1.09000 * 109.47046 * 305.74274 * 5 4 3 7 7 N 1.46900 * 109.46795 * 65.74737 * 5 4 3 8 8 C 1.46902 * 110.99733 * 205.90289 * 7 5 4 9 9 C 1.50705 * 109.46912 * 176.30372 * 8 7 5 10 10 O 1.21276 * 119.99820 * 359.72366 * 9 8 7 11 11 N 1.34775 * 119.99545 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99609 * 179.97438 * 11 9 8 13 13 C 1.50707 * 109.47245 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99354 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00293 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99787 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99578 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47065 * 90.00417 * 17 15 13 19 19 H 1.48506 * 109.46752 * 209.99610 * 17 15 13 20 20 H 1.48498 * 109.47418 * 329.99886 * 17 15 13 21 21 C 1.50701 * 109.47024 * 185.74361 * 5 4 3 22 22 C 1.38231 * 120.00002 * 279.72623 * 21 5 4 23 23 C 1.38241 * 120.00078 * 179.78776 * 22 21 5 24 24 C 1.38240 * 119.99564 * 0.44667 * 23 22 21 25 25 C 1.38236 * 119.99962 * 359.80538 * 24 23 22 26 26 C 1.38230 * 119.99897 * 359.97438 * 25 24 23 27 27 H 1.07997 * 120.00243 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99850 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99878 * 179.97438 * 2 1 3 30 30 H 1.08991 * 109.47343 * 5.00415 * 3 2 1 31 31 H 1.08999 * 109.47166 * 244.99332 * 3 2 1 32 32 H 1.09000 * 109.47194 * 54.85767 * 4 3 2 33 33 H 1.08990 * 109.47708 * 294.85158 * 4 3 2 34 34 H 1.00903 * 110.99752 * 329.84851 * 7 5 4 35 35 H 1.08993 * 109.47115 * 56.30017 * 8 7 5 36 36 H 1.09003 * 109.46705 * 296.30125 * 8 7 5 37 37 H 0.97000 * 120.00729 * 0.02562 * 11 9 8 38 38 H 1.08996 * 109.47410 * 300.00246 * 12 11 9 39 39 H 1.09002 * 109.47175 * 60.00410 * 12 11 9 40 40 H 0.97007 * 119.99580 * 180.02562 * 16 15 13 41 41 H 1.08004 * 120.00521 * 0.02562 * 22 21 5 42 42 H 1.07999 * 120.00169 * 180.27666 * 23 22 21 43 43 H 1.07997 * 119.99475 * 179.83256 * 24 23 22 44 44 H 1.07999 * 119.99659 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.99721 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3330 1.1817 5 6 3.8901 2.5998 1.1090 6 1 4.3739 2.6561 0.1339 7 7 3.0354 3.7791 1.3006 8 6 3.6213 4.9636 0.6590 9 6 2.6763 6.1293 0.7979 10 8 1.6166 5.9859 1.3702 11 7 3.0065 7.3297 0.2818 12 6 2.0876 8.4627 0.4163 13 6 2.6892 9.6783 -0.2406 14 1 3.6590 9.6131 -0.7116 15 6 2.0013 10.8731 -0.2413 16 7 2.5262 11.9337 -0.8150 17 14 0.3238 10.9854 0.5728 18 1 0.4898 11.3674 1.9982 19 1 -0.4960 12.0104 -0.1220 20 1 -0.3562 9.6678 0.4894 21 6 4.9401 2.5596 2.1892 22 6 4.6106 2.9044 3.4866 23 6 5.5728 2.8634 4.4784 24 6 6.8667 2.4864 4.1708 25 6 7.1974 2.1465 2.8723 26 6 6.2342 2.1833 1.8816 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 3.6809 0.4560 1.1418 33 1 2.4722 1.3277 2.1150 34 1 2.1013 3.6080 0.9594 35 1 3.7915 4.7577 -0.3977 36 1 4.5695 5.2053 1.1394 37 1 3.8522 7.4433 -0.1794 38 1 1.1398 8.2209 -0.0646 39 1 1.9167 8.6684 1.4730 40 1 2.0423 12.7745 -0.8151 41 1 3.6005 3.2023 3.7263 42 1 5.3143 3.1285 5.4929 43 1 7.6190 2.4569 4.9450 44 1 8.2084 1.8524 2.6319 45 1 6.4927 1.9182 0.8670 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775462953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:45 Heat of formation + Delta-G solvation = -22.135981 kcal Electronic energy + Delta-G solvation = -23687.779816 eV Core-core repulsion = 20283.156489 eV Total energy + Delta-G solvation = -3404.623327 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.83076 -40.14313 -37.98849 -36.18814 -35.60978 -34.41068 -32.84712 -31.65844 -31.04611 -30.21598 -27.61210 -25.78496 -23.84624 -23.44430 -23.14364 -21.49615 -21.14041 -20.67113 -19.18626 -17.87353 -17.70666 -17.24895 -16.88558 -16.51810 -16.22937 -16.02429 -15.83174 -15.44604 -15.09435 -14.82106 -14.57471 -14.34760 -14.16297 -14.15013 -14.04662 -13.71436 -13.49081 -13.15226 -13.07915 -12.79710 -12.70183 -12.47714 -12.01663 -11.94199 -11.85315 -11.75295 -11.66516 -11.47788 -10.92922 -10.78810 -10.22057 -9.93788 -9.70950 -9.51767 -9.42463 -8.41014 -6.47953 0.52966 0.62410 1.31980 1.34132 1.42054 1.46588 1.73484 2.26931 2.34361 2.94452 2.96184 3.26388 3.76693 3.86952 3.96501 4.05827 4.15788 4.26779 4.30408 4.33897 4.40748 4.44913 4.50905 4.55710 4.64334 4.75486 4.77884 4.83243 4.87068 5.02347 5.02395 5.14038 5.21008 5.25181 5.28166 5.31622 5.51714 5.65828 5.70231 5.74212 5.76551 5.91074 6.03856 6.12148 6.21472 6.37181 6.53251 6.85788 7.15054 7.41677 8.73767 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.011949 B = 0.003296 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.740571 B = 8494.239992 C =10127.818473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.099 4.099 4 C -0.101 4.101 5 C 0.131 3.869 6 H 0.071 0.929 7 N -0.678 5.678 8 C 0.057 3.943 9 C 0.499 3.501 10 O -0.585 6.585 11 N -0.707 5.707 12 C 0.233 3.767 13 C -0.547 4.547 14 H 0.059 0.941 15 C 0.026 3.974 16 N -0.931 5.931 17 Si 0.938 3.062 18 H -0.266 1.266 19 H -0.272 1.272 20 H -0.261 1.261 21 C -0.084 4.084 22 C -0.104 4.104 23 C -0.140 4.140 24 C -0.131 4.131 25 C -0.129 4.129 26 C -0.122 4.122 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.350 0.650 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.408 0.592 38 H 0.013 0.987 39 H 0.008 0.992 40 H 0.272 0.728 41 H 0.113 0.887 42 H 0.125 0.875 43 H 0.135 0.865 44 H 0.141 0.859 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.815 -26.761 3.987 27.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.173 4.173 3 C -0.136 4.136 4 C -0.139 4.139 5 C 0.022 3.978 6 H 0.089 0.911 7 N -0.313 5.313 8 C -0.075 4.075 9 C 0.286 3.714 10 O -0.466 6.466 11 N -0.358 5.358 12 C 0.109 3.891 13 C -0.585 4.585 14 H 0.078 0.922 15 C -0.174 4.174 16 N -0.570 5.570 17 Si 0.761 3.239 18 H -0.191 1.191 19 H -0.197 1.197 20 H -0.185 1.185 21 C -0.085 4.085 22 C -0.122 4.122 23 C -0.158 4.158 24 C -0.149 4.149 25 C -0.147 4.147 26 C -0.140 4.140 27 H 0.107 0.893 28 H 0.125 0.875 29 H 0.140 0.860 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.172 0.828 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.244 0.756 38 H 0.031 0.969 39 H 0.026 0.974 40 H 0.082 0.918 41 H 0.131 0.869 42 H 0.143 0.857 43 H 0.153 0.847 44 H 0.159 0.841 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.273 -26.499 4.949 27.677 hybrid contribution -0.648 0.721 -0.702 1.196 sum 5.625 -25.778 4.247 26.724 Atomic orbital electron populations 1.24019 0.96393 1.02201 1.01490 1.23028 0.96010 0.98629 0.99596 1.20838 0.98224 0.95603 0.98940 1.21612 0.97261 0.96517 0.98537 1.20524 0.92010 0.89449 0.95809 0.91115 1.60126 1.06049 1.02453 1.62671 1.21768 0.97042 0.88589 1.00123 1.21289 0.87627 0.84748 0.77768 1.90629 1.26831 1.84686 1.44440 1.46024 1.23012 1.09666 1.57065 1.19062 0.90005 0.84524 0.95460 1.21303 1.05777 0.94022 1.37368 0.92241 1.25602 1.01618 0.95022 0.95167 1.69982 1.40378 1.01776 1.44854 0.85857 0.79912 0.78823 0.79286 1.19116 1.19720 1.18482 1.19926 0.94408 0.99612 0.94559 1.21090 0.99696 0.98337 0.93077 1.21407 0.94014 1.00661 0.99752 1.21417 0.96470 0.99465 0.97518 1.21391 1.00186 1.00159 0.92978 1.21268 0.92212 1.00150 1.00399 0.89280 0.87451 0.86028 0.92502 0.90008 0.89512 0.91936 0.82789 0.89633 0.87438 0.75622 0.96933 0.97375 0.91832 0.86866 0.85708 0.84664 0.84127 0.84371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.22 14.32 67.78 0.97 -2.25 16 2 C -0.15 -2.29 9.52 25.65 0.24 -2.05 16 3 C -0.10 -1.52 5.40 29.85 0.16 -1.36 16 4 C -0.10 -1.60 4.75 30.60 0.15 -1.45 16 5 C 0.13 2.36 2.24 44.17 0.10 2.46 16 6 H 0.07 1.07 7.59 -2.39 -0.02 1.05 16 7 N -0.68 -16.34 5.24 -499.44 -2.61 -18.95 16 8 C 0.06 1.44 6.00 85.56 0.51 1.95 16 9 C 0.50 18.34 7.86 87.66 0.69 19.03 16 10 O -0.59 -26.25 16.11 -3.02 -0.05 -26.29 16 11 N -0.71 -28.17 5.55 -466.79 -2.59 -30.76 16 12 C 0.23 11.54 4.50 85.64 0.39 11.93 16 13 C -0.55 -30.36 9.83 25.60 0.25 -30.11 16 14 H 0.06 3.46 7.84 -2.91 -0.02 3.43 16 15 C 0.03 1.49 5.47 84.66 0.46 1.96 16 16 N -0.93 -55.84 13.96 21.45 0.30 -55.54 16 17 Si 0.94 44.44 27.47 68.60 1.88 46.32 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.26 -12.25 6.54 99.48 0.65 -11.60 16 21 C -0.08 -1.67 4.80 -19.87 -0.10 -1.76 16 22 C -0.10 -2.38 9.33 22.27 0.21 -2.17 16 23 C -0.14 -2.89 10.05 22.27 0.22 -2.67 16 24 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 25 C -0.13 -2.08 10.05 22.27 0.22 -1.85 16 26 C -0.12 -2.04 9.67 22.27 0.22 -1.82 16 27 H 0.09 1.54 7.84 -2.91 -0.02 1.52 16 28 H 0.11 1.39 8.06 -2.91 -0.02 1.37 16 29 H 0.12 1.43 8.06 -2.91 -0.02 1.41 16 30 H 0.06 1.05 6.29 -2.39 -0.02 1.03 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.35 8.97 6.14 -89.69 -0.55 8.42 16 35 H 0.09 1.70 7.96 -2.39 -0.02 1.69 16 36 H 0.11 2.57 8.09 -2.39 -0.02 2.55 16 37 H 0.41 14.16 8.32 -92.71 -0.77 13.39 16 38 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 39 H 0.01 0.43 7.57 -2.39 -0.02 0.41 16 40 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 41 H 0.11 2.94 7.71 -2.91 -0.02 2.91 16 42 H 0.12 2.27 8.06 -2.91 -0.02 2.24 16 43 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 44 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 45 H 0.14 1.67 8.04 -2.91 -0.02 1.65 16 Total: -1.00 -68.89 376.52 1.45 -67.44 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: -0.40 Total: 30.05 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 4.92 Total: -12.26 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -4.91 Total: -105.25 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.05 Total: -26.29 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Total: -68.89 1.45 -67.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775462953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.304 kcal (2) G-P(sol) polarization free energy of solvation -68.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds