Wall clock time and date at job start Tue Mar 31 2020 08:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47188 * 2 1 4 4 C 1.50696 * 119.99814 * 275.80530 * 3 2 1 5 5 C 1.32987 * 119.99983 * 95.80308 * 3 2 1 6 6 C 1.50706 * 120.00021 * 185.75824 * 5 3 2 7 7 C 1.47105 * 120.00277 * 5.75654 * 5 3 2 8 8 O 1.21613 * 119.99724 * 263.86837 * 7 5 3 9 9 N 1.34773 * 120.00070 * 83.87011 * 7 5 3 10 10 C 1.46507 * 119.99951 * 5.02454 * 9 7 5 11 11 C 1.50697 * 109.47400 * 265.15768 * 10 9 7 12 12 H 1.08006 * 119.99779 * 3.60717 * 11 10 9 13 13 C 1.37867 * 120.00329 * 183.61174 * 11 10 9 14 14 N 1.31520 * 120.00151 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00264 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47230 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47229 * 120.00112 * 15 13 11 18 18 H 1.48502 * 109.47340 * 239.99795 * 15 13 11 19 19 C 1.46496 * 120.00370 * 185.02360 * 9 7 5 20 20 C 1.50701 * 109.47257 * 270.00292 * 19 9 7 21 21 C 1.38228 * 119.61631 * 95.02129 * 20 19 9 22 22 C 1.38633 * 119.15678 * 179.74730 * 21 20 19 23 23 C 1.38673 * 118.42023 * 0.46893 * 22 21 20 24 24 C 1.38180 * 119.16059 * 359.50753 * 23 22 21 25 25 N 1.31845 * 119.61567 * 274.99534 * 20 19 9 26 26 H 1.09005 * 109.47209 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.46782 * 299.99849 * 1 2 3 28 28 H 1.08997 * 109.47438 * 59.99734 * 1 2 3 29 29 H 1.08995 * 109.46995 * 239.99756 * 2 1 3 30 30 H 1.08996 * 109.47047 * 119.99896 * 2 1 3 31 31 H 1.08999 * 109.47095 * 274.20006 * 4 3 2 32 32 H 1.09007 * 109.47231 * 34.19663 * 4 3 2 33 33 H 1.08998 * 109.47738 * 154.19899 * 4 3 2 34 34 H 1.08997 * 109.47282 * 184.85256 * 6 5 3 35 35 H 1.09001 * 109.47008 * 304.85647 * 6 5 3 36 36 H 1.09002 * 109.47028 * 64.85263 * 6 5 3 37 37 H 1.09010 * 109.46657 * 25.15568 * 10 9 7 38 38 H 1.08996 * 109.47331 * 145.15327 * 10 9 7 39 39 H 0.96993 * 120.00769 * 179.97438 * 14 13 11 40 40 H 1.09004 * 109.47042 * 149.99766 * 19 9 7 41 41 H 1.09002 * 109.46777 * 29.99987 * 19 9 7 42 42 H 1.07995 * 120.42275 * 359.95080 * 21 20 19 43 43 H 1.07997 * 120.78864 * 180.23212 * 22 21 20 44 44 H 1.08001 * 120.41832 * 179.78426 * 23 22 21 45 45 H 1.08007 * 119.61732 * 180.24890 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1591 2.1752 -1.2984 5 6 2.3638 2.0089 1.1458 6 6 2.7418 3.4677 1.1623 7 6 2.3615 1.2356 2.3972 8 8 1.3904 1.2655 3.1286 9 7 3.4355 0.4939 2.7330 10 6 4.6464 0.5435 1.9097 11 6 4.6230 -0.5867 0.9132 12 1 3.7635 -1.2382 0.8556 13 6 5.6988 -0.7893 0.0751 14 7 6.7454 0.0042 0.1450 15 14 5.6702 -2.1907 -1.1596 16 1 4.3884 -2.9306 -1.0388 17 1 5.7970 -1.6423 -2.5338 18 1 6.8021 -3.1128 -0.8882 19 6 3.3923 -0.3619 3.9212 20 6 3.8709 0.4172 5.1191 21 6 2.9507 1.0428 5.9392 22 6 3.4012 1.7526 7.0416 23 6 4.7670 1.8150 7.2733 24 6 5.6269 1.1637 6.4097 25 7 5.1624 0.4938 5.3730 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.1256 1.9570 -1.7525 32 1 1.3619 1.8689 -1.9759 33 1 2.0813 3.2452 -1.1061 34 1 3.0625 3.7486 2.1654 35 1 3.5563 3.6400 0.4588 36 1 1.8798 4.0697 0.8746 37 1 4.6862 1.4949 1.3791 38 1 5.5243 0.4467 2.5484 39 1 7.5025 -0.1384 -0.4443 40 1 4.0373 -1.2274 3.7692 41 1 2.3689 -0.6967 4.0907 42 1 1.8941 0.9768 5.7258 43 1 2.7052 2.2483 7.7020 44 1 5.1535 2.3620 8.1206 45 1 6.6918 1.2041 6.5855 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780930228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:48 Heat of formation + Delta-G solvation = 1.234401 kcal Electronic energy + Delta-G solvation = -25706.364148 eV Core-core repulsion = 22302.754237 eV Total energy + Delta-G solvation = -3403.609911 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.06016 -39.12416 -36.03510 -34.98733 -32.72293 -32.13787 -31.84921 -31.21623 -28.49972 -27.49720 -26.50767 -25.30938 -23.27502 -22.74968 -22.49570 -21.74190 -19.64404 -17.01948 -16.84950 -16.32345 -16.03696 -15.56479 -15.24457 -15.20718 -14.79186 -14.45056 -13.83266 -13.55368 -13.42888 -13.10968 -12.99860 -12.70766 -12.51948 -12.29778 -12.18088 -12.09337 -11.82802 -11.62661 -11.50110 -11.44657 -11.37922 -11.18447 -10.87344 -10.67947 -10.37906 -10.31452 -10.10265 -9.68530 -9.58521 -9.16673 -9.07514 -8.69127 -8.46558 -7.95111 -7.69916 -6.07348 -4.12161 1.34074 1.55393 2.50018 3.25369 3.34048 3.36064 3.40414 3.88079 4.33503 4.43615 4.64522 5.00664 5.07762 5.25376 5.26932 5.28923 5.37156 5.42620 5.56084 5.74441 5.81865 5.83513 5.86630 5.88758 5.94202 6.01040 6.05438 6.13114 6.23841 6.26448 6.34999 6.36248 6.40030 6.41579 6.46100 6.60292 6.74776 6.85690 6.96343 7.07927 7.35473 7.42633 7.62262 7.87075 8.17737 8.32601 8.42446 8.87181 9.04301 9.53104 11.00146 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.006227 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.410487 B = 4495.521094 C = 5857.288700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 C -0.064 4.064 4 C -0.116 4.116 5 C -0.165 4.165 6 C -0.094 4.094 7 C 0.565 3.435 8 O -0.574 6.574 9 N -0.581 5.581 10 C 0.241 3.759 11 C -0.524 4.524 12 H 0.063 0.937 13 C 0.066 3.934 14 N -0.890 5.890 15 Si 0.888 3.112 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.167 3.833 20 C 0.121 3.879 21 C -0.151 4.151 22 C -0.085 4.085 23 C -0.182 4.182 24 C 0.094 3.906 25 N -0.463 5.463 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.045 0.955 39 H 0.262 0.738 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.138 0.862 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.628 4.110 5.977 9.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.127 4.127 3 C -0.065 4.065 4 C -0.172 4.172 5 C -0.168 4.168 6 C -0.151 4.151 7 C 0.354 3.646 8 O -0.455 6.455 9 N -0.311 5.311 10 C 0.121 3.879 11 C -0.563 4.563 12 H 0.081 0.919 13 C -0.136 4.136 14 N -0.529 5.529 15 Si 0.716 3.284 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.043 3.957 20 C -0.018 4.018 21 C -0.171 4.171 22 C -0.111 4.111 23 C -0.202 4.202 24 C -0.064 4.064 25 N -0.172 5.172 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.156 0.844 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.330 3.713 5.697 9.290 hybrid contribution -0.170 -0.263 -0.133 0.340 sum -6.500 3.450 5.564 9.225 Atomic orbital electron populations 1.21724 0.95686 1.01028 1.01617 1.20634 0.94669 0.93694 1.03674 1.21667 0.96177 0.95267 0.93367 1.20839 1.02278 0.99330 0.94772 1.20867 1.06428 0.96410 0.93068 1.20540 1.00860 0.91624 1.02063 1.18433 0.82149 0.78744 0.85307 1.90657 1.35160 1.66299 1.53427 1.48253 1.16061 1.41955 1.24804 1.19469 0.80989 0.97776 0.89647 1.21486 1.02632 1.13997 1.18161 0.91930 1.24869 0.95242 0.96209 0.97302 1.69944 1.06371 1.37853 1.38754 0.86597 0.78130 0.82458 0.81230 1.19667 1.21016 1.21030 1.20146 1.01576 0.92512 0.81475 1.21883 0.88686 0.95589 0.95633 1.22135 1.01792 0.97998 0.95201 1.21539 0.95709 0.97031 0.96787 1.22078 0.94420 1.02157 1.01582 1.22761 1.00220 0.93147 0.90226 1.67604 1.15887 1.16333 1.17379 0.93065 0.92454 0.93257 0.91242 0.90294 0.90424 0.92349 0.91909 0.92809 0.91220 0.91840 0.94587 0.93696 0.92851 0.88394 0.89588 0.84418 0.85356 0.85367 0.83106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.89 37.16 0.37 -1.84 16 2 C -0.09 -1.63 5.10 -27.88 -0.14 -1.77 16 3 C -0.06 -1.16 5.36 -101.17 -0.54 -1.70 16 4 C -0.12 -1.76 9.59 36.00 0.35 -1.41 16 5 C -0.16 -3.20 3.88 -102.84 -0.40 -3.60 16 6 C -0.09 -1.57 8.47 36.01 0.30 -1.26 16 7 C 0.56 11.94 5.19 -12.66 -0.07 11.88 16 8 O -0.57 -12.72 16.49 5.27 0.09 -12.63 16 9 N -0.58 -12.48 2.30 -177.82 -0.41 -12.89 16 10 C 0.24 5.85 5.01 -5.19 -0.03 5.83 16 11 C -0.52 -13.36 8.80 -34.45 -0.30 -13.66 16 12 H 0.06 1.59 6.25 -52.48 -0.33 1.27 16 13 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -24.79 13.29 55.43 0.74 -24.05 16 15 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C 0.17 3.25 5.70 -5.20 -0.03 3.22 16 20 C 0.12 2.22 6.36 -82.59 -0.53 1.70 16 21 C -0.15 -2.44 9.72 -39.44 -0.38 -2.82 16 22 C -0.08 -1.14 10.18 -39.27 -0.40 -1.54 16 23 C -0.18 -2.34 10.11 -39.44 -0.40 -2.74 16 24 C 0.09 1.42 11.18 -17.55 -0.20 1.22 16 25 N -0.46 -8.65 10.27 -9.47 -0.10 -8.75 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.63 5.11 -51.93 -0.27 1.37 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.85 6.41 -51.93 -0.33 0.52 16 34 H 0.05 0.92 7.99 -51.93 -0.42 0.50 16 35 H 0.07 1.13 7.74 -51.93 -0.40 0.73 16 36 H 0.06 0.92 7.86 -51.93 -0.41 0.51 16 37 H 0.04 0.93 6.67 -51.92 -0.35 0.58 16 38 H 0.04 1.21 8.11 -51.93 -0.42 0.79 16 39 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.10 1.94 8.07 -51.93 -0.42 1.53 16 41 H 0.09 1.57 7.40 -51.93 -0.38 1.18 16 42 H 0.14 2.21 7.81 -52.49 -0.41 1.80 16 43 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 44 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 45 H 0.15 1.86 8.06 -52.48 -0.42 1.44 16 LS Contribution 373.95 15.07 5.64 5.64 Total: -1.00 -29.94 373.95 -8.63 -38.57 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.07 Total: 5.47 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.49 Total: -6.86 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.23 Total: -45.69 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.09 Total: -12.63 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.94 -8.63 -38.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780930228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.807 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds