Wall clock time and date at job start Tue Mar 31 2020 08:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47188 * 2 1 4 4 C 1.50696 * 119.99814 * 275.80530 * 3 2 1 5 5 C 1.32987 * 119.99983 * 95.80308 * 3 2 1 6 6 C 1.50706 * 120.00021 * 185.75824 * 5 3 2 7 7 C 1.47105 * 120.00277 * 5.75654 * 5 3 2 8 8 O 1.21613 * 119.99724 * 263.86837 * 7 5 3 9 9 N 1.34773 * 120.00070 * 83.87011 * 7 5 3 10 10 C 1.46507 * 119.99951 * 5.02454 * 9 7 5 11 11 C 1.50697 * 109.47400 * 265.15768 * 10 9 7 12 12 H 1.08006 * 119.99779 * 3.60717 * 11 10 9 13 13 C 1.37867 * 120.00329 * 183.61174 * 11 10 9 14 14 N 1.31520 * 120.00151 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00264 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47230 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47229 * 120.00112 * 15 13 11 18 18 H 1.48502 * 109.47340 * 239.99795 * 15 13 11 19 19 C 1.46496 * 120.00370 * 185.02360 * 9 7 5 20 20 C 1.50701 * 109.47257 * 270.00292 * 19 9 7 21 21 C 1.38228 * 119.61631 * 95.02129 * 20 19 9 22 22 C 1.38633 * 119.15678 * 179.74730 * 21 20 19 23 23 C 1.38673 * 118.42023 * 0.46893 * 22 21 20 24 24 C 1.38180 * 119.16059 * 359.50753 * 23 22 21 25 25 N 1.31845 * 119.61567 * 274.99534 * 20 19 9 26 26 H 1.09005 * 109.47209 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.46782 * 299.99849 * 1 2 3 28 28 H 1.08997 * 109.47438 * 59.99734 * 1 2 3 29 29 H 1.08995 * 109.46995 * 239.99756 * 2 1 3 30 30 H 1.08996 * 109.47047 * 119.99896 * 2 1 3 31 31 H 1.08999 * 109.47095 * 274.20006 * 4 3 2 32 32 H 1.09007 * 109.47231 * 34.19663 * 4 3 2 33 33 H 1.08998 * 109.47738 * 154.19899 * 4 3 2 34 34 H 1.08997 * 109.47282 * 184.85256 * 6 5 3 35 35 H 1.09001 * 109.47008 * 304.85647 * 6 5 3 36 36 H 1.09002 * 109.47028 * 64.85263 * 6 5 3 37 37 H 1.09010 * 109.46657 * 25.15568 * 10 9 7 38 38 H 1.08996 * 109.47331 * 145.15327 * 10 9 7 39 39 H 0.96993 * 120.00769 * 179.97438 * 14 13 11 40 40 H 1.09004 * 109.47042 * 149.99766 * 19 9 7 41 41 H 1.09002 * 109.46777 * 29.99987 * 19 9 7 42 42 H 1.07995 * 120.42275 * 359.95080 * 21 20 19 43 43 H 1.07997 * 120.78864 * 180.23212 * 22 21 20 44 44 H 1.08001 * 120.41832 * 179.78426 * 23 22 21 45 45 H 1.08007 * 119.61732 * 180.24890 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1591 2.1752 -1.2984 5 6 2.3638 2.0089 1.1458 6 6 2.7418 3.4677 1.1623 7 6 2.3615 1.2356 2.3972 8 8 1.3904 1.2655 3.1286 9 7 3.4355 0.4939 2.7330 10 6 4.6464 0.5435 1.9097 11 6 4.6230 -0.5867 0.9132 12 1 3.7635 -1.2382 0.8556 13 6 5.6988 -0.7893 0.0751 14 7 6.7454 0.0042 0.1450 15 14 5.6702 -2.1907 -1.1596 16 1 4.3884 -2.9306 -1.0388 17 1 5.7970 -1.6423 -2.5338 18 1 6.8021 -3.1128 -0.8882 19 6 3.3923 -0.3619 3.9212 20 6 3.8709 0.4172 5.1191 21 6 2.9507 1.0428 5.9392 22 6 3.4012 1.7526 7.0416 23 6 4.7670 1.8150 7.2733 24 6 5.6269 1.1637 6.4097 25 7 5.1624 0.4938 5.3730 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.1256 1.9570 -1.7525 32 1 1.3619 1.8689 -1.9759 33 1 2.0813 3.2452 -1.1061 34 1 3.0625 3.7486 2.1654 35 1 3.5563 3.6400 0.4588 36 1 1.8798 4.0697 0.8746 37 1 4.6862 1.4949 1.3791 38 1 5.5243 0.4467 2.5484 39 1 7.5025 -0.1384 -0.4443 40 1 4.0373 -1.2274 3.7692 41 1 2.3689 -0.6967 4.0907 42 1 1.8941 0.9768 5.7258 43 1 2.7052 2.2483 7.7020 44 1 5.1535 2.3620 8.1206 45 1 6.6918 1.2041 6.5855 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780930228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:47 Heat of formation + Delta-G solvation = -14.262721 kcal Electronic energy + Delta-G solvation = -25707.036154 eV Core-core repulsion = 22302.754237 eV Total energy + Delta-G solvation = -3404.281917 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.45156 -40.58893 -37.48064 -36.73182 -34.61766 -33.40255 -33.21491 -32.61219 -29.79345 -29.31953 -28.02148 -26.73044 -24.83444 -24.31510 -23.86426 -23.07207 -21.18140 -18.74970 -18.53858 -17.77418 -17.49534 -16.97750 -16.80951 -16.54209 -16.32531 -16.14790 -15.28738 -14.96237 -14.84107 -14.45581 -14.22690 -14.17582 -14.01643 -13.78575 -13.60914 -13.42557 -13.38170 -13.22099 -12.97479 -12.92865 -12.72821 -12.67251 -12.61527 -12.54079 -12.01568 -11.80044 -11.68546 -11.54054 -10.82928 -10.73610 -10.54724 -10.37734 -9.94748 -9.45271 -9.39713 -8.12008 -6.23440 0.13213 0.39489 1.04395 1.40483 1.43833 1.53673 1.75313 2.34578 2.49829 3.00930 3.19415 3.38208 3.74138 3.85901 3.96311 4.02295 4.13348 4.19973 4.26049 4.41614 4.47524 4.53550 4.57418 4.59743 4.68030 4.76335 4.77187 4.87274 4.88439 4.94520 4.97062 5.00950 5.08540 5.15783 5.21705 5.24194 5.26842 5.30994 5.38569 5.62788 5.76035 5.80670 5.85331 5.97981 6.14579 6.61425 6.87281 7.12777 7.30597 7.47161 8.95222 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.006227 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.410487 B = 4495.521094 C = 5857.288700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.093 4.093 3 C -0.063 4.063 4 C -0.113 4.113 5 C -0.196 4.196 6 C -0.087 4.087 7 C 0.563 3.437 8 O -0.589 6.589 9 N -0.584 5.584 10 C 0.266 3.734 11 C -0.522 4.522 12 H 0.060 0.940 13 C 0.022 3.978 14 N -0.923 5.923 15 Si 0.948 3.052 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.285 1.285 19 C 0.168 3.832 20 C 0.095 3.905 21 C -0.160 4.160 22 C -0.079 4.079 23 C -0.163 4.163 24 C 0.079 3.921 25 N -0.505 5.505 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.020 0.980 38 H 0.013 0.987 39 H 0.263 0.737 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.133 0.867 43 H 0.166 0.834 44 H 0.173 0.827 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.582 5.001 6.082 10.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.130 4.130 3 C -0.064 4.064 4 C -0.169 4.169 5 C -0.199 4.199 6 C -0.144 4.144 7 C 0.354 3.646 8 O -0.471 6.471 9 N -0.313 5.313 10 C 0.145 3.855 11 C -0.561 4.561 12 H 0.078 0.922 13 C -0.178 4.178 14 N -0.563 5.563 15 Si 0.773 3.227 16 H -0.190 1.190 17 H -0.202 1.202 18 H -0.211 1.211 19 C 0.044 3.956 20 C -0.043 4.043 21 C -0.181 4.181 22 C -0.105 4.105 23 C -0.183 4.183 24 C -0.079 4.079 25 N -0.215 5.215 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.038 0.962 38 H 0.031 0.969 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.151 0.849 43 H 0.184 0.816 44 H 0.190 0.810 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.303 4.598 5.811 10.404 hybrid contribution 0.143 -0.536 -0.050 0.557 sum -7.160 4.062 5.761 10.048 Atomic orbital electron populations 1.21637 0.93353 1.02031 1.02001 1.20653 0.96717 0.93583 1.02063 1.22040 0.94636 0.95345 0.94364 1.20874 1.02529 1.00152 0.93333 1.21100 1.08346 0.97763 0.92665 1.20533 1.01972 0.90347 1.01545 1.18769 0.81578 0.78445 0.85847 1.90625 1.35435 1.66866 1.54216 1.48173 1.15373 1.42474 1.25266 1.18934 0.81032 0.96639 0.88868 1.21613 1.02408 1.13935 1.18099 0.92193 1.25570 0.94884 0.98327 0.98984 1.70054 1.07027 1.39487 1.39772 0.85658 0.78123 0.79661 0.79212 1.18997 1.20245 1.21133 1.20125 1.01453 0.92173 0.81841 1.21611 0.89352 0.97331 0.96044 1.22148 1.01139 0.98626 0.96158 1.21983 0.96870 0.95741 0.95882 1.22518 0.93761 1.00399 1.01609 1.23280 1.01879 0.92926 0.89782 1.67497 1.16263 1.18244 1.19533 0.91842 0.93967 0.90816 0.91186 0.93453 0.91431 0.89919 0.90054 0.93953 0.90963 0.89185 0.96215 0.96903 0.92763 0.90103 0.89161 0.84912 0.81623 0.80952 0.80929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 9.89 71.98 0.71 -3.21 16 2 C -0.09 -3.35 5.10 29.85 0.15 -3.20 16 3 C -0.06 -2.25 5.36 -17.62 -0.09 -2.35 16 4 C -0.11 -3.20 9.59 71.23 0.68 -2.52 16 5 C -0.20 -7.65 3.88 -18.70 -0.07 -7.73 16 6 C -0.09 -2.87 8.47 71.24 0.60 -2.27 16 7 C 0.56 24.58 5.19 86.57 0.45 25.03 16 8 O -0.59 -26.76 16.49 -4.07 -0.07 -26.83 16 9 N -0.58 -26.34 2.30 -834.77 -1.92 -28.26 16 10 C 0.27 13.59 5.01 85.63 0.43 14.01 16 11 C -0.52 -27.43 8.80 25.60 0.23 -27.20 16 12 H 0.06 3.14 6.25 -2.91 -0.02 3.12 16 13 C 0.02 1.16 5.46 84.65 0.46 1.63 16 14 N -0.92 -52.50 13.29 21.44 0.28 -52.22 16 15 Si 0.95 42.38 29.54 68.60 2.03 44.40 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 17 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 19 C 0.17 6.95 5.70 85.63 0.49 7.43 16 20 C 0.09 3.61 6.36 42.55 0.27 3.88 16 21 C -0.16 -5.17 9.72 22.36 0.22 -4.96 16 22 C -0.08 -1.93 10.18 22.47 0.23 -1.71 16 23 C -0.16 -3.71 10.11 22.36 0.23 -3.49 16 24 C 0.08 2.30 11.18 84.67 0.95 3.25 16 25 N -0.51 -19.49 10.27 -183.88 -1.89 -21.38 16 26 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 27 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.05 2.00 5.11 -2.39 -0.01 1.99 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.08 2.00 6.41 -2.39 -0.02 1.98 16 34 H 0.04 1.45 7.99 -2.39 -0.02 1.43 16 35 H 0.07 2.31 7.74 -2.39 -0.02 2.29 16 36 H 0.09 2.43 7.86 -2.39 -0.02 2.41 16 37 H 0.02 1.07 6.67 -2.38 -0.02 1.06 16 38 H 0.01 0.74 8.11 -2.39 -0.02 0.72 16 39 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 40 H 0.08 3.50 8.07 -2.38 -0.02 3.48 16 41 H 0.09 3.53 7.40 -2.39 -0.02 3.51 16 42 H 0.13 4.33 7.81 -2.91 -0.02 4.30 16 43 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 44 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 45 H 0.17 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -67.01 373.95 5.33 -61.68 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.97 Total: 25.99 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 5.93 Total: -3.40 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -3.52 Total: -101.85 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.07 Total: -26.83 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -67.01 5.33 -61.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780930228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.415 kcal (2) G-P(sol) polarization free energy of solvation -67.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds