Wall clock time and date at job start Tue Mar 31 2020 08:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00172 * 2 1 4 4 N 1.46503 * 109.47351 * 124.99590 * 3 2 1 5 5 C 1.46499 * 120.00055 * 270.00574 * 4 3 2 6 6 C 1.50704 * 109.46999 * 269.99838 * 5 4 3 7 7 H 1.07998 * 119.99892 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00226 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99716 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00095 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46927 * 59.99448 * 10 8 6 12 12 H 1.48496 * 109.46935 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46758 * 299.99643 * 10 8 6 14 14 C 1.34776 * 119.99814 * 89.99882 * 4 3 2 15 15 O 1.21581 * 119.99833 * 180.02562 * 14 4 3 16 16 N 1.34768 * 120.00000 * 0.02562 * 14 4 3 17 17 C 1.39949 * 119.99982 * 184.58705 * 16 14 4 18 18 C 1.38874 * 120.06738 * 144.91088 * 17 16 14 19 19 C 1.38109 * 119.92732 * 180.30373 * 18 17 16 20 20 C 1.38282 * 120.06730 * 359.41922 * 19 18 17 21 21 C 1.50704 * 119.92867 * 180.30109 * 20 19 18 22 22 C 1.53003 * 109.47223 * 270.29959 * 21 20 19 23 23 C 1.53000 * 109.47045 * 179.97438 * 22 21 20 24 24 C 1.38284 * 120.14280 * 0.60301 * 20 19 18 25 25 C 1.38111 * 120.06787 * 359.68141 * 24 20 19 26 26 H 1.08004 * 119.99936 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.00062 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.00047 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47138 * 4.99788 * 3 2 1 30 30 H 1.08997 * 109.47206 * 244.99656 * 3 2 1 31 31 H 1.08999 * 109.47014 * 29.99252 * 5 4 3 32 32 H 1.09000 * 109.47559 * 149.99534 * 5 4 3 33 33 H 0.96997 * 119.99505 * 180.02562 * 9 8 6 34 34 H 0.97000 * 120.00549 * 4.59544 * 16 14 4 35 35 H 1.07995 * 120.03523 * 0.02567 * 18 17 16 36 36 H 1.08001 * 119.96957 * 179.70019 * 19 18 17 37 37 H 1.08999 * 109.47347 * 30.30267 * 21 20 19 38 38 H 1.09003 * 109.47107 * 150.29985 * 21 20 19 39 39 H 1.08992 * 109.47390 * 300.00076 * 22 21 20 40 40 H 1.09003 * 109.47107 * 60.00550 * 22 21 20 41 41 H 1.08999 * 109.47704 * 300.00418 * 23 22 21 42 42 H 1.09003 * 109.46927 * 60.00245 * 23 22 21 43 43 H 1.09003 * 109.47236 * 180.02562 * 23 22 21 44 44 H 1.07999 * 119.96271 * 179.69970 * 24 20 19 45 45 H 1.07997 * 120.03620 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5588 1.8649 2.4249 6 6 2.8441 3.3437 2.4804 7 1 3.3039 3.8369 1.6368 8 6 2.5192 4.0666 3.6086 9 7 1.9597 3.4658 4.6361 10 14 2.8722 5.8997 3.6771 11 1 2.1355 6.5868 2.5861 12 1 2.4314 6.4399 4.9882 13 1 4.3300 6.1295 3.5113 14 6 4.2497 0.8662 0.9825 15 8 5.0215 0.8880 1.9216 16 7 4.6499 0.3762 -0.2074 17 6 5.9209 -0.1951 -0.3372 18 6 6.1137 -1.2780 -1.1851 19 6 7.3678 -1.8435 -1.3061 20 6 8.4334 -1.3251 -0.5934 21 6 9.8020 -1.9404 -0.7330 22 6 9.9699 -3.0517 0.3052 23 6 11.3592 -3.6767 0.1629 24 6 8.2446 -0.2472 0.2521 25 6 6.9916 0.3192 0.3820 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6214 1.4026 -0.9313 31 1 1.4887 1.6967 2.5458 32 1 3.0988 1.3603 3.2261 33 1 1.7308 3.9745 5.4296 34 1 4.0572 0.4196 -0.9741 35 1 5.2829 -1.6802 -1.7457 36 1 7.5175 -2.6887 -1.9616 37 1 9.9121 -2.3583 -1.7337 38 1 10.5622 -1.1758 -0.5730 39 1 9.8599 -2.6338 1.3058 40 1 9.2098 -3.8163 0.1451 41 1 11.4689 -4.0948 -0.8377 42 1 12.1196 -2.9123 0.3227 43 1 11.4787 -4.4687 0.9023 44 1 9.0778 0.1523 0.8110 45 1 6.8448 1.1612 1.0421 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814506708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:54 Heat of formation + Delta-G solvation = 10.414861 kcal Electronic energy + Delta-G solvation = -24032.441453 eV Core-core repulsion = 20629.229636 eV Total energy + Delta-G solvation = -3403.211817 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.27777 -38.73624 -36.05383 -35.32211 -33.83107 -33.11580 -32.10144 -30.72523 -30.01362 -27.59771 -26.08623 -25.29808 -23.14664 -22.66906 -21.91632 -20.71915 -20.06849 -19.25559 -17.86518 -16.94692 -16.48178 -15.62884 -15.54709 -15.14324 -14.87313 -14.52964 -14.30844 -13.95958 -13.85381 -13.57303 -13.38615 -13.21386 -12.77359 -12.71697 -12.37694 -12.14583 -12.08648 -11.78547 -11.37261 -11.29445 -11.12711 -11.06072 -10.97750 -10.91653 -10.70877 -10.58450 -10.18713 -9.85457 -9.67165 -9.25008 -9.22639 -8.69494 -8.43012 -7.91595 -7.54971 -6.04002 -4.08933 1.50309 1.62800 2.38151 3.26544 3.31906 3.36506 3.40371 3.71229 4.09389 4.37948 4.52151 4.75672 4.80937 4.98801 5.06102 5.15299 5.17529 5.29864 5.34882 5.35768 5.39246 5.48163 5.56603 5.64571 5.69519 5.77498 5.84792 5.91911 5.94374 6.08137 6.11630 6.17555 6.20543 6.51641 6.52936 6.74430 6.78733 6.83896 6.87478 6.92556 7.35681 7.36662 7.50558 7.67111 7.93772 8.22819 8.56439 8.91614 9.23129 9.56374 11.03878 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.003399 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.672712 B = 8235.910731 C = 9556.923098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.172 4.172 3 C 0.137 3.863 4 N -0.603 5.603 5 C 0.262 3.738 6 C -0.528 4.528 7 H 0.056 0.944 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.699 3.301 15 O -0.566 6.566 16 N -0.697 5.697 17 C 0.175 3.825 18 C -0.154 4.154 19 C -0.101 4.101 20 C -0.113 4.113 21 C -0.074 4.074 22 C -0.121 4.121 23 C -0.152 4.152 24 C -0.098 4.098 25 C -0.118 4.118 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.264 0.736 34 H 0.400 0.600 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.120 0.880 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.446 -11.800 -14.431 20.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.191 4.191 3 C 0.013 3.987 4 N -0.337 5.337 5 C 0.143 3.857 6 C -0.567 4.567 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.401 3.599 15 O -0.442 6.442 16 N -0.347 5.347 17 C 0.079 3.921 18 C -0.176 4.176 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.112 4.112 22 C -0.158 4.158 23 C -0.210 4.210 24 C -0.117 4.117 25 C -0.138 4.138 26 H 0.118 0.882 27 H 0.113 0.887 28 H 0.122 0.878 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.237 0.763 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.138 0.862 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.826 -11.680 -13.456 19.884 hybrid contribution -0.357 0.999 -0.250 1.090 sum 8.470 -10.680 -13.706 19.330 Atomic orbital electron populations 1.23825 0.95795 1.01824 1.00209 1.23444 0.96504 0.98962 1.00206 1.20529 0.93194 0.95696 0.89276 1.47594 1.08789 1.63121 1.14198 1.19230 0.95254 0.93553 0.77674 1.21413 1.40621 0.93376 1.01256 0.92531 1.24921 0.95063 0.98727 0.95305 1.69925 1.41958 1.36260 1.05180 0.86564 0.78838 0.84914 0.77127 1.20296 1.21182 1.20173 1.15942 0.83204 0.78591 0.82195 1.90887 1.52645 1.61328 1.39383 1.42986 1.15774 1.63775 1.12162 1.17587 0.84293 0.92725 0.97494 1.20807 0.97979 0.95937 1.02828 1.20666 0.91920 0.99527 0.99828 1.19770 0.95455 0.97386 0.98745 1.20546 0.93613 0.97640 0.99352 1.21534 0.97080 0.97728 0.99494 1.21794 0.97097 1.00594 1.01484 1.20922 0.96857 0.95993 0.97919 1.21467 0.90834 1.01286 1.00224 0.88205 0.88732 0.87796 0.89007 0.91567 0.94767 0.93730 0.92649 0.76287 0.86208 0.86329 0.91465 0.91332 0.91731 0.91941 0.92882 0.92773 0.92824 0.86195 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 14.32 29.01 0.42 -1.85 16 2 C -0.17 -2.40 9.85 -36.03 -0.35 -2.76 16 3 C 0.14 2.19 5.65 -5.19 -0.03 2.16 16 4 N -0.60 -12.75 2.44 -182.18 -0.44 -13.19 16 5 C 0.26 6.84 5.16 -5.19 -0.03 6.81 16 6 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 7 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 10 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.70 14.93 8.12 -86.93 -0.71 14.23 16 15 O -0.57 -14.48 13.36 5.29 0.07 -14.40 16 16 N -0.70 -11.50 5.22 -14.23 -0.07 -11.57 16 17 C 0.18 2.80 6.30 -83.68 -0.53 2.28 16 18 C -0.15 -2.00 9.97 -39.39 -0.39 -2.39 16 19 C -0.10 -1.18 9.69 -39.61 -0.38 -1.57 16 20 C -0.11 -1.37 5.14 -104.59 -0.54 -1.91 16 21 C -0.07 -0.70 5.34 -27.88 -0.15 -0.85 16 22 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 23 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 24 C -0.10 -1.39 9.69 -39.61 -0.38 -1.77 16 25 C -0.12 -2.01 8.69 -39.40 -0.34 -2.35 16 26 H 0.10 1.24 7.84 -52.48 -0.41 0.83 16 27 H 0.09 1.04 8.06 -52.49 -0.42 0.61 16 28 H 0.10 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.09 1.51 7.72 -51.93 -0.40 1.11 16 30 H 0.07 0.86 6.30 -51.93 -0.33 0.53 16 31 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.40 5.29 6.52 -40.82 -0.27 5.03 16 35 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 38 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.14 2.89 6.22 -52.49 -0.33 2.56 16 LS Contribution 377.13 15.07 5.68 5.68 Total: -1.00 -32.63 377.13 -9.83 -42.45 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -7.15 Total: 5.55 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -3.63 Total: -5.53 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.22 Total: -50.58 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.07 Total: -14.40 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.63 -9.83 -42.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814506708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.868 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds