Wall clock time and date at job start Tue Mar 31 2020 08:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00172 * 2 1 4 4 N 1.46503 * 109.47351 * 124.99590 * 3 2 1 5 5 C 1.46499 * 120.00055 * 270.00574 * 4 3 2 6 6 C 1.50704 * 109.46999 * 269.99838 * 5 4 3 7 7 H 1.07998 * 119.99892 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00226 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99716 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00095 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46927 * 59.99448 * 10 8 6 12 12 H 1.48496 * 109.46935 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46758 * 299.99643 * 10 8 6 14 14 C 1.34776 * 119.99814 * 89.99882 * 4 3 2 15 15 O 1.21581 * 119.99833 * 180.02562 * 14 4 3 16 16 N 1.34768 * 120.00000 * 0.02562 * 14 4 3 17 17 C 1.39949 * 119.99982 * 184.58705 * 16 14 4 18 18 C 1.38874 * 120.06738 * 144.91088 * 17 16 14 19 19 C 1.38109 * 119.92732 * 180.30373 * 18 17 16 20 20 C 1.38282 * 120.06730 * 359.41922 * 19 18 17 21 21 C 1.50704 * 119.92867 * 180.30109 * 20 19 18 22 22 C 1.53003 * 109.47223 * 270.29959 * 21 20 19 23 23 C 1.53000 * 109.47045 * 179.97438 * 22 21 20 24 24 C 1.38284 * 120.14280 * 0.60301 * 20 19 18 25 25 C 1.38111 * 120.06787 * 359.68141 * 24 20 19 26 26 H 1.08004 * 119.99936 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.00062 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.00047 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47138 * 4.99788 * 3 2 1 30 30 H 1.08997 * 109.47206 * 244.99656 * 3 2 1 31 31 H 1.08999 * 109.47014 * 29.99252 * 5 4 3 32 32 H 1.09000 * 109.47559 * 149.99534 * 5 4 3 33 33 H 0.96997 * 119.99505 * 180.02562 * 9 8 6 34 34 H 0.97000 * 120.00549 * 4.59544 * 16 14 4 35 35 H 1.07995 * 120.03523 * 0.02567 * 18 17 16 36 36 H 1.08001 * 119.96957 * 179.70019 * 19 18 17 37 37 H 1.08999 * 109.47347 * 30.30267 * 21 20 19 38 38 H 1.09003 * 109.47107 * 150.29985 * 21 20 19 39 39 H 1.08992 * 109.47390 * 300.00076 * 22 21 20 40 40 H 1.09003 * 109.47107 * 60.00550 * 22 21 20 41 41 H 1.08999 * 109.47704 * 300.00418 * 23 22 21 42 42 H 1.09003 * 109.46927 * 60.00245 * 23 22 21 43 43 H 1.09003 * 109.47236 * 180.02562 * 23 22 21 44 44 H 1.07999 * 119.96271 * 179.69970 * 24 20 19 45 45 H 1.07997 * 120.03620 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5588 1.8649 2.4249 6 6 2.8441 3.3437 2.4804 7 1 3.3039 3.8369 1.6368 8 6 2.5192 4.0666 3.6086 9 7 1.9597 3.4658 4.6361 10 14 2.8722 5.8997 3.6771 11 1 2.1355 6.5868 2.5861 12 1 2.4314 6.4399 4.9882 13 1 4.3300 6.1295 3.5113 14 6 4.2497 0.8662 0.9825 15 8 5.0215 0.8880 1.9216 16 7 4.6499 0.3762 -0.2074 17 6 5.9209 -0.1951 -0.3372 18 6 6.1137 -1.2780 -1.1851 19 6 7.3678 -1.8435 -1.3061 20 6 8.4334 -1.3251 -0.5934 21 6 9.8020 -1.9404 -0.7330 22 6 9.9699 -3.0517 0.3052 23 6 11.3592 -3.6767 0.1629 24 6 8.2446 -0.2472 0.2521 25 6 6.9916 0.3192 0.3820 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6214 1.4026 -0.9313 31 1 1.4887 1.6967 2.5458 32 1 3.0988 1.3603 3.2261 33 1 1.7308 3.9745 5.4296 34 1 4.0572 0.4196 -0.9741 35 1 5.2829 -1.6802 -1.7457 36 1 7.5175 -2.6887 -1.9616 37 1 9.9121 -2.3583 -1.7337 38 1 10.5622 -1.1758 -0.5730 39 1 9.8599 -2.6338 1.3058 40 1 9.2098 -3.8163 0.1451 41 1 11.4689 -4.0948 -0.8377 42 1 12.1196 -2.9123 0.3227 43 1 11.4787 -4.4687 0.9023 44 1 9.0778 0.1523 0.8110 45 1 6.8448 1.1612 1.0421 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814506708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:53 Heat of formation + Delta-G solvation = -7.254820 kcal Electronic energy + Delta-G solvation = -24033.207667 eV Core-core repulsion = 20629.229636 eV Total energy + Delta-G solvation = -3403.978032 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.72419 -39.97664 -37.45482 -36.57647 -35.24353 -34.68774 -33.72110 -31.81422 -31.12536 -29.41385 -27.19764 -26.68538 -24.91619 -23.83880 -22.92318 -21.73397 -21.30769 -20.64011 -19.31609 -18.59137 -18.35345 -16.99613 -16.72162 -16.48513 -16.23458 -16.03454 -15.62100 -15.14502 -14.95970 -14.83678 -14.47380 -14.38331 -14.23678 -14.09517 -13.67981 -13.37699 -13.26041 -13.05508 -12.91121 -12.79633 -12.59298 -12.29372 -12.22309 -12.16149 -11.99997 -11.88989 -11.71833 -11.45638 -11.15958 -10.86400 -10.64727 -10.36433 -9.80767 -9.59145 -8.85424 -8.22061 -6.37243 0.38769 0.52841 1.24198 1.35823 1.40026 1.47439 1.84845 2.16174 2.38489 2.90981 3.02792 3.08137 3.92972 3.95007 4.00382 4.14364 4.17749 4.23479 4.30712 4.31719 4.51706 4.56376 4.60512 4.71224 4.75534 4.88930 4.92778 4.96375 5.02798 5.06725 5.13715 5.20057 5.25428 5.32464 5.42418 5.46669 5.50951 5.51114 5.66867 5.68248 5.73358 5.79033 5.90352 6.05347 6.08538 6.18725 6.71180 7.03043 7.29763 7.62020 8.84321 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.003399 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.672712 B = 8235.910731 C = 9556.923098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.187 4.187 3 C 0.134 3.866 4 N -0.608 5.608 5 C 0.282 3.718 6 C -0.543 4.543 7 H 0.052 0.948 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.966 3.034 11 H -0.260 1.260 12 H -0.277 1.277 13 H -0.280 1.280 14 C 0.694 3.306 15 O -0.620 6.620 16 N -0.676 5.676 17 C 0.144 3.856 18 C -0.142 4.142 19 C -0.095 4.095 20 C -0.104 4.104 21 C -0.071 4.071 22 C -0.120 4.120 23 C -0.149 4.149 24 C -0.109 4.109 25 C -0.148 4.148 26 H 0.101 0.899 27 H 0.117 0.883 28 H 0.110 0.890 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.027 0.973 32 H -0.004 1.004 33 H 0.267 0.733 34 H 0.417 0.583 35 H 0.151 0.849 36 H 0.158 0.842 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.125 0.875 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.839 -13.069 -17.362 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.207 4.207 3 C 0.012 3.988 4 N -0.342 5.342 5 C 0.160 3.840 6 C -0.582 4.582 7 H 0.070 0.930 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.791 3.209 11 H -0.184 1.184 12 H -0.202 1.202 13 H -0.205 1.205 14 C 0.396 3.604 15 O -0.500 6.500 16 N -0.327 5.327 17 C 0.049 3.951 18 C -0.162 4.162 19 C -0.113 4.113 20 C -0.105 4.105 21 C -0.108 4.108 22 C -0.158 4.158 23 C -0.207 4.207 24 C -0.127 4.127 25 C -0.168 4.168 26 H 0.119 0.881 27 H 0.135 0.865 28 H 0.128 0.872 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.045 0.955 32 H 0.015 0.985 33 H 0.076 0.924 34 H 0.257 0.743 35 H 0.169 0.831 36 H 0.175 0.825 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.143 0.857 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.204 -12.972 -16.472 22.898 hybrid contribution -0.433 1.296 0.624 1.502 sum 8.771 -11.676 -15.848 21.551 Atomic orbital electron populations 1.24063 0.95388 1.03020 0.97626 1.23296 0.96915 0.97995 1.02472 1.20783 0.92739 0.96841 0.88465 1.47425 1.09776 1.62974 1.14011 1.18623 0.93818 0.92442 0.79089 1.21675 1.40655 0.94455 1.01411 0.93007 1.25827 0.94650 1.03679 0.94801 1.70044 1.42717 1.38169 1.05753 0.85492 0.78399 0.79107 0.77947 1.18402 1.20238 1.20543 1.16128 0.82733 0.78521 0.83006 1.90853 1.54099 1.63373 1.41637 1.42601 1.16353 1.62910 1.10861 1.17844 0.83405 0.94532 0.99287 1.21123 0.99614 0.94157 1.01329 1.21147 0.90946 0.99861 0.99370 1.20135 0.97308 0.95950 0.97074 1.20606 0.91787 0.97756 1.00680 1.21515 0.98274 0.97589 0.98433 1.21766 0.95906 1.00647 1.02342 1.21040 0.95881 0.96957 0.98849 1.21279 0.93015 1.01405 1.01148 0.88061 0.86472 0.87164 0.89751 0.88474 0.95531 0.98543 0.92365 0.74301 0.83120 0.82479 0.89113 0.90865 0.93499 0.91892 0.91606 0.92555 0.92628 0.85656 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 14.32 67.78 0.97 -2.87 16 2 C -0.19 -5.03 9.85 25.65 0.25 -4.78 16 3 C 0.13 4.24 5.65 85.63 0.48 4.72 16 4 N -0.61 -26.76 2.44 -848.57 -2.07 -28.83 16 5 C 0.28 15.55 5.16 85.63 0.44 15.99 16 6 C -0.54 -31.82 9.39 25.60 0.24 -31.58 16 7 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 8 C 0.01 0.56 5.46 84.65 0.46 1.02 16 9 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 10 Si 0.97 45.53 29.54 68.60 2.03 47.55 16 11 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 14 C 0.69 31.16 8.12 179.06 1.45 32.62 16 15 O -0.62 -34.20 13.36 -3.97 -0.05 -34.26 16 16 N -0.68 -22.55 5.22 -317.19 -1.65 -24.20 16 17 C 0.14 4.64 6.30 38.15 0.24 4.88 16 18 C -0.14 -3.30 9.97 22.39 0.22 -3.08 16 19 C -0.09 -1.90 9.69 22.25 0.22 -1.69 16 20 C -0.10 -2.32 5.14 -19.84 -0.10 -2.42 16 21 C -0.07 -1.13 5.34 29.85 0.16 -0.97 16 22 C -0.12 -1.94 5.92 30.60 0.18 -1.75 16 23 C -0.15 -1.85 9.91 71.98 0.71 -1.14 16 24 C -0.11 -3.14 9.69 22.25 0.22 -2.92 16 25 C -0.15 -5.36 8.69 22.39 0.19 -5.17 16 26 H 0.10 2.35 7.84 -2.91 -0.02 2.33 16 27 H 0.12 2.24 8.06 -2.91 -0.02 2.22 16 28 H 0.11 2.83 8.06 -2.91 -0.02 2.81 16 29 H 0.08 2.78 7.72 -2.38 -0.02 2.76 16 30 H 0.10 2.40 6.30 -2.39 -0.02 2.39 16 31 H 0.03 1.48 8.07 -2.39 -0.02 1.47 16 32 H 0.00 -0.23 7.42 -2.39 -0.02 -0.25 16 33 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 34 H 0.42 10.56 6.52 -92.71 -0.60 9.95 16 35 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 36 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 38 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 39 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 41 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.13 3.31 8.06 -2.91 -0.02 3.28 16 45 H 0.10 4.49 6.22 -2.91 -0.02 4.47 16 Total: -1.00 -76.18 377.13 5.24 -70.95 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.36 Total: 24.36 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 6.35 Total: 0.86 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -3.44 Total: -109.46 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -0.05 Total: -34.26 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -76.18 5.24 -70.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814506708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.690 kcal (2) G-P(sol) polarization free energy of solvation -76.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds