Wall clock time and date at job start Tue Mar 31 2020 08:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46848 * 2 1 4 4 C 1.50697 * 109.46924 * 119.99814 * 2 1 3 5 5 C 1.37983 * 120.07809 * 305.52636 * 4 2 1 6 6 C 1.38334 * 120.14867 * 180.28068 * 5 4 2 7 7 C 1.38378 * 120.28877 * 359.69443 * 6 5 4 8 8 C 1.37931 * 120.14885 * 0.02562 * 7 6 5 9 9 C 1.39556 * 120.07367 * 125.23008 * 4 2 1 10 10 C 1.47843 * 120.14421 * 0.02562 * 9 4 2 11 11 O 1.21558 * 119.99718 * 51.41468 * 10 9 4 12 12 N 1.34775 * 120.00480 * 231.41962 * 10 9 4 13 13 C 1.46962 * 120.60013 * 185.27218 * 12 10 9 14 14 C 1.53371 * 108.63602 * 235.20236 * 13 12 10 15 15 N 1.46964 * 108.63142 * 310.57269 * 14 13 12 16 16 C 1.36937 * 120.59419 * 235.20321 * 15 14 13 17 17 H 1.07996 * 119.99949 * 30.84699 * 16 15 14 18 18 C 1.38807 * 120.00096 * 211.12859 * 16 15 14 19 19 N 1.31622 * 120.00082 * 10.19771 * 18 16 15 20 20 Si 1.86796 * 120.00212 * 190.19775 * 18 16 15 21 21 H 1.48503 * 109.47079 * 89.99820 * 20 18 16 22 22 H 1.48499 * 109.47339 * 209.99937 * 20 18 16 23 23 H 1.48505 * 109.47145 * 329.99979 * 20 18 16 24 24 C 1.46960 * 118.81387 * 55.48150 * 15 14 13 25 25 C 1.46974 * 120.58954 * 5.24318 * 12 10 9 26 26 H 1.08998 * 109.46948 * 300.00166 * 1 2 3 27 27 H 1.09002 * 109.46584 * 60.00304 * 1 2 3 28 28 H 1.08994 * 109.46805 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47161 * 240.00332 * 2 1 3 30 30 H 1.09006 * 109.47099 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47633 * 299.99639 * 3 2 1 32 32 H 1.08998 * 109.47481 * 60.00161 * 3 2 1 33 33 H 1.08006 * 119.92082 * 0.02562 * 5 4 2 34 34 H 1.07997 * 119.85517 * 179.72633 * 6 5 4 35 35 H 1.08003 * 119.92851 * 180.02562 * 7 6 5 36 36 H 1.08002 * 120.07664 * 180.02562 * 8 7 6 37 37 H 1.09000 * 109.61046 * 115.45509 * 13 12 10 38 38 H 1.09007 * 109.60543 * 354.94795 * 13 12 10 39 39 H 1.09001 * 109.60727 * 190.83309 * 14 13 12 40 40 H 1.08998 * 109.60672 * 70.32043 * 14 13 12 41 41 H 0.96994 * 120.00229 * 180.02562 * 19 18 16 42 42 H 1.09007 * 109.60852 * 64.26015 * 24 15 14 43 43 H 1.09001 * 109.61419 * 184.77400 * 24 15 14 44 44 H 1.08995 * 109.61107 * 244.54280 * 25 12 10 45 45 H 1.09001 * 109.60837 * 5.06111 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6087 -0.3104 2.4813 6 6 2.0733 -0.9577 3.6121 7 6 2.9602 -2.0136 3.4970 8 6 3.3872 -2.4272 2.2524 9 6 2.9223 -1.7783 1.1072 10 6 3.3758 -2.2161 -0.2301 11 8 3.8288 -1.4050 -1.0139 12 7 3.2870 -3.5146 -0.5802 13 6 3.8385 -3.9840 -1.8590 14 6 2.7276 -4.6975 -2.6394 15 7 2.0779 -5.6694 -1.7488 16 6 1.9876 -6.9888 -2.1044 17 1 2.7540 -7.4357 -2.7202 18 6 0.9081 -7.7501 -1.6782 19 7 -0.1242 -7.1666 -1.1071 20 14 0.9203 -9.6030 -1.9152 21 1 1.5285 -10.2502 -0.7250 22 1 -0.4723 -10.0894 -2.0858 23 1 1.7146 -9.9423 -3.1232 24 6 1.5214 -5.1991 -0.4726 25 6 2.6373 -4.4866 0.3104 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1301 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 0.9159 0.5126 2.5778 34 1 1.7420 -0.6378 4.5890 35 1 3.3189 -2.5151 4.3838 36 1 4.0791 -3.2518 2.1639 37 1 4.6576 -4.6783 -1.6713 38 1 4.2018 -3.1329 -2.4351 39 1 3.1577 -5.2167 -3.4959 40 1 1.9941 -3.9674 -2.9815 41 1 -0.8784 -7.6986 -0.8089 42 1 0.7039 -4.5038 -0.6640 43 1 1.1547 -6.0494 0.1023 44 1 3.3708 -5.2166 0.6525 45 1 2.2071 -3.9674 1.1669 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828304001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:11 Heat of formation + Delta-G solvation = 11.564915 kcal Electronic energy + Delta-G solvation = -25642.482977 eV Core-core repulsion = 22239.321030 eV Total energy + Delta-G solvation = -3403.161947 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.44123 -38.49354 -36.72742 -35.33267 -33.83430 -31.89289 -30.73922 -29.97265 -29.78118 -27.05561 -26.95964 -24.27075 -23.50125 -23.05881 -22.54157 -20.57119 -19.93574 -18.80137 -17.45381 -16.36721 -16.14939 -15.61132 -15.47709 -14.82228 -14.39007 -14.35938 -13.97385 -13.69643 -13.66174 -13.43328 -13.36249 -13.30883 -13.09067 -12.51032 -12.30178 -12.12756 -12.03704 -11.60139 -11.58140 -11.26942 -11.05099 -10.88091 -10.74309 -10.67194 -10.60731 -10.49429 -10.20659 -10.05192 -9.86275 -9.42642 -8.80964 -8.69296 -8.59018 -8.23475 -6.68356 -5.85530 -3.35710 1.10527 1.37654 3.00245 3.32691 3.39131 3.40460 3.43103 3.82686 4.42301 4.65529 4.74801 4.83186 4.99324 5.15749 5.29762 5.30852 5.33070 5.36286 5.45031 5.52664 5.67379 5.81395 5.82139 5.87320 5.88380 5.89490 5.95693 6.05407 6.12975 6.14135 6.19197 6.24194 6.35645 6.37333 6.39196 6.44751 6.45786 6.66982 6.78817 6.90522 6.95303 7.23887 7.51812 7.69889 7.89914 8.37483 8.52372 9.12330 9.72805 10.30986 11.21263 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.004272 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.088120 B = 6553.488652 C = 6854.375506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 C -0.134 4.134 4 C -0.027 4.027 5 C -0.123 4.123 6 C -0.103 4.103 7 C -0.131 4.131 8 C -0.084 4.084 9 C -0.115 4.115 10 C 0.554 3.446 11 O -0.550 6.550 12 N -0.588 5.588 13 C 0.095 3.905 14 C 0.132 3.868 15 N -0.592 5.592 16 C -0.254 4.254 17 H 0.067 0.933 18 C 0.005 3.995 19 N -0.906 5.906 20 Si 0.907 3.093 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.159 3.841 25 C 0.076 3.924 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.024 0.976 41 H 0.255 0.745 42 H 0.022 0.978 43 H 0.105 0.895 44 H 0.063 0.937 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.700 12.528 8.514 15.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.191 4.191 4 C -0.028 4.028 5 C -0.141 4.141 6 C -0.121 4.121 7 C -0.149 4.149 8 C -0.103 4.103 9 C -0.118 4.118 10 C 0.342 3.658 11 O -0.430 6.430 12 N -0.319 5.319 13 C -0.029 4.029 14 C 0.005 3.995 15 N -0.314 5.314 16 C -0.384 4.384 17 H 0.085 0.915 18 C -0.194 4.194 19 N -0.550 5.550 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.204 1.204 24 C 0.032 3.968 25 C -0.048 4.048 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.040 0.960 43 H 0.123 0.877 44 H 0.081 0.919 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.775 12.818 8.117 15.634 hybrid contribution -0.127 -1.139 0.053 1.147 sum 3.648 11.679 8.169 14.712 Atomic orbital electron populations 1.21875 0.94342 1.02307 1.01595 1.20312 0.95675 0.96531 0.96306 1.21734 1.01564 0.94588 1.01226 1.19859 0.94272 0.93395 0.95275 1.20909 1.00867 1.00687 0.91597 1.21234 0.96786 0.95694 0.98436 1.21035 0.98840 0.97872 0.97151 1.21271 0.98937 0.98411 0.91684 1.19846 1.00535 0.97869 0.93592 1.18349 0.78618 0.82267 0.86525 1.90714 1.47493 1.52343 1.52476 1.48028 1.56218 1.07194 1.20497 1.22241 0.97310 0.98715 0.84634 1.21302 0.93117 0.92260 0.92866 1.43982 1.67254 1.04353 1.15852 1.19228 1.03249 0.85122 1.30790 0.91525 1.25174 0.94703 0.98714 1.00812 1.69934 1.06602 1.34249 1.44234 0.86218 0.76874 0.85130 0.78087 1.21345 1.21641 1.20375 1.21320 0.90441 0.97812 0.87186 1.22931 0.97556 0.91112 0.93228 0.92714 0.92324 0.92279 0.88857 0.92299 0.92487 0.93039 0.85724 0.85933 0.85676 0.85532 0.91855 0.89935 0.91515 0.95851 0.93436 0.95967 0.87732 0.91915 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.94 37.16 0.33 -1.45 16 2 C -0.07 -0.99 2.74 -91.77 -0.25 -1.24 16 3 C -0.13 -1.62 9.06 37.16 0.34 -1.28 16 4 C -0.03 -0.39 4.81 -104.23 -0.50 -0.89 16 5 C -0.12 -1.45 8.75 -39.64 -0.35 -1.80 16 6 C -0.10 -1.11 10.04 -39.49 -0.40 -1.50 16 7 C -0.13 -1.48 10.03 -39.64 -0.40 -1.88 16 8 C -0.08 -1.15 7.63 -39.19 -0.30 -1.44 16 9 C -0.12 -1.83 4.72 -104.97 -0.50 -2.32 16 10 C 0.55 10.20 6.32 -12.33 -0.08 10.12 16 11 O -0.55 -11.24 14.73 5.31 0.08 -11.16 16 12 N -0.59 -10.99 2.95 -173.32 -0.51 -11.50 16 13 C 0.09 1.77 6.60 -3.60 -0.02 1.75 16 14 C 0.13 2.78 6.67 -3.60 -0.02 2.76 16 15 N -0.59 -14.46 2.96 -171.77 -0.51 -14.97 16 16 C -0.25 -6.74 9.59 -15.06 -0.14 -6.89 16 17 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 18 C 0.00 0.12 5.07 -17.43 -0.09 0.03 16 19 N -0.91 -25.40 10.95 55.49 0.61 -24.79 16 20 Si 0.91 21.05 29.57 -169.99 -5.03 16.03 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 C 0.16 3.67 5.50 -3.37 -0.02 3.65 16 25 C 0.08 1.41 5.65 -3.36 -0.02 1.39 16 26 H 0.05 0.57 7.10 -51.93 -0.37 0.20 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.61 5.51 -51.93 -0.29 1.32 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.53 7.74 -51.93 -0.40 0.13 16 33 H 0.12 1.21 7.10 -52.48 -0.37 0.84 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 36 H 0.13 1.62 7.57 -52.49 -0.40 1.22 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 1.50 6.99 -51.92 -0.36 1.13 16 39 H 0.07 1.34 7.93 -51.93 -0.41 0.92 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.02 0.55 8.14 -51.92 -0.42 0.13 16 43 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.08 1.28 5.17 -51.93 -0.27 1.01 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -30.12 353.06 -9.41 -39.53 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.95 Total: 2.56 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -2.42 Total: -1.01 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.41 Total: -51.27 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.12 -9.41 -39.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828304001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.095 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds