Wall clock time and date at job start Tue Mar 31 2020 08:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38364 * 119.84984 * 269.72616 * 3 2 1 5 5 C 1.37955 * 120.14568 * 179.72161 * 4 3 2 6 6 C 1.39594 * 119.84648 * 0.56966 * 5 4 3 7 7 C 1.47807 * 120.14106 * 179.68195 * 6 5 4 8 8 O 1.21577 * 119.99746 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00017 * 0.02562 * 7 6 5 10 10 N 1.40106 * 120.00068 * 179.97438 * 9 7 6 11 11 C 1.28015 * 120.00174 * 180.02562 * 10 9 7 12 12 C 1.50701 * 119.99709 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99839 * 180.02562 * 11 10 9 14 14 C 1.52994 * 109.47177 * 114.99861 * 13 11 10 15 15 C 1.53008 * 109.46988 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.46945 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99978 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99755 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00273 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00059 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46641 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47019 * 119.99679 * 20 18 16 23 23 H 1.48496 * 109.47273 * 239.99983 * 20 18 16 24 24 C 1.39590 * 119.71367 * 359.70327 * 6 5 4 25 25 C 1.37954 * 119.84982 * 0.02562 * 24 6 5 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 31 31 H 1.08004 * 119.92248 * 359.97438 * 4 3 2 32 32 H 1.07999 * 120.07067 * 180.24822 * 5 4 3 33 33 H 0.97001 * 120.00093 * 359.97438 * 9 7 6 34 34 H 1.09005 * 109.46918 * 90.00410 * 12 11 10 35 35 H 1.09000 * 109.46898 * 210.00165 * 12 11 10 36 36 H 1.08999 * 109.47648 * 329.99889 * 12 11 10 37 37 H 1.09002 * 109.46434 * 234.99981 * 13 11 10 38 38 H 1.08991 * 109.47126 * 354.99376 * 13 11 10 39 39 H 1.08993 * 109.47651 * 299.99716 * 14 13 11 40 40 H 1.08999 * 109.47300 * 60.00021 * 14 13 11 41 41 H 1.08997 * 109.46990 * 299.99795 * 15 14 13 42 42 H 1.08999 * 109.46699 * 60.00123 * 15 14 13 43 43 H 0.97000 * 120.00269 * 180.02562 * 19 18 16 44 44 H 1.08002 * 120.07672 * 179.97438 * 24 6 5 45 45 H 1.07998 * 119.93111 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2673 2.0682 -1.2001 5 6 2.7218 3.3708 -1.2072 6 6 2.9558 4.0315 -0.0001 7 6 3.4494 5.4248 -0.0001 8 8 3.6528 5.9976 1.0527 9 7 3.6740 6.0600 -1.1673 10 7 4.1414 7.3809 -1.1674 11 6 4.3542 7.9845 -2.2761 12 6 4.1026 7.2741 -3.5811 13 6 4.8575 9.4049 -2.2761 14 6 6.2596 9.4492 -2.8868 15 6 6.7702 10.8916 -2.8874 16 6 8.1510 10.9353 -3.4895 17 1 8.6178 10.0254 -3.8366 18 6 8.8188 12.1368 -3.5962 19 7 8.2509 13.2447 -3.1721 20 14 10.5307 12.1910 -4.3419 21 1 10.9418 10.8200 -4.7375 22 1 10.5215 13.0694 -5.5392 23 1 11.4893 12.7267 -3.3423 24 6 2.7221 3.3707 1.2071 25 6 2.2623 2.0701 1.2001 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.0907 1.5540 -2.1332 32 1 2.9010 3.8762 -2.1446 33 1 3.5121 5.6028 -2.0074 34 1 3.0730 7.4454 -3.8954 35 1 4.7831 7.6583 -4.3410 36 1 4.2698 6.2049 -3.4510 37 1 4.1848 10.0286 -2.8649 38 1 4.8951 9.7770 -1.2524 39 1 6.9322 8.8256 -2.2981 40 1 6.2219 9.0771 -3.9106 41 1 6.0975 11.5149 -3.4764 42 1 6.8079 11.2640 -1.8637 43 1 8.7206 14.0901 -3.2476 44 1 2.9016 3.8762 2.1445 45 1 2.0815 1.5574 2.1332 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841613197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:09 Heat of formation + Delta-G solvation = 1.062518 kcal Electronic energy + Delta-G solvation = -22733.410299 eV Core-core repulsion = 19329.792934 eV Total energy + Delta-G solvation = -3403.617365 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.47320 -38.97967 -37.53299 -34.75378 -34.53684 -33.00352 -31.62677 -31.12452 -30.00727 -28.43110 -27.31639 -25.05088 -23.70617 -23.04037 -22.18089 -20.68528 -20.27889 -19.57809 -18.03187 -16.51791 -16.23357 -16.02310 -15.75258 -15.33303 -15.26208 -14.51827 -14.44431 -14.15650 -14.01812 -13.93112 -13.80013 -13.64828 -13.58417 -12.88970 -12.42255 -12.29710 -12.05891 -11.81382 -11.76071 -11.56295 -11.52950 -11.34731 -11.29313 -10.83643 -10.68705 -10.52942 -10.15695 -9.96708 -9.67220 -9.41774 -9.37698 -9.18248 -9.09092 -8.59582 -8.33303 -5.98325 -4.00575 0.44009 0.95469 2.00332 2.47231 2.80964 3.32268 3.39870 3.43666 3.55807 4.15834 4.27168 4.39537 4.47114 4.51889 4.64717 4.68658 4.83338 4.89950 4.94671 5.02217 5.06738 5.09829 5.33367 5.37693 5.38879 5.40849 5.47196 5.58134 5.70887 5.83289 5.84016 5.86543 5.92901 6.00844 6.04557 6.11759 6.43976 6.46963 6.67921 6.83208 7.06415 7.11255 7.59121 7.69442 7.83636 8.01789 8.41794 8.43945 9.06633 9.63451 11.12955 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.032628 B = 0.001951 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.941644 B =14345.359800 C =14485.392367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.058 4.058 4 C -0.124 4.124 5 C -0.085 4.085 6 C -0.133 4.133 7 C 0.573 3.427 8 O -0.504 6.504 9 N -0.586 5.586 10 N -0.249 5.249 11 C 0.119 3.881 12 C -0.163 4.163 13 C -0.066 4.066 14 C -0.103 4.103 15 C 0.020 3.980 16 C -0.520 4.520 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.053 4.053 25 C -0.125 4.125 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.380 0.620 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.260 0.740 44 H 0.139 0.861 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.161 -27.045 2.411 32.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.058 4.058 4 C -0.142 4.142 5 C -0.103 4.103 6 C -0.137 4.137 7 C 0.361 3.639 8 O -0.377 6.377 9 N -0.329 5.329 10 N -0.053 5.053 11 C -0.075 4.075 12 C -0.222 4.222 13 C -0.106 4.106 14 C -0.142 4.142 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.072 4.072 25 C -0.143 4.143 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.221 0.779 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.069 0.931 44 H 0.157 0.843 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.012 -26.506 4.205 31.775 hybrid contribution 0.855 -0.299 -1.772 1.991 sum -16.156 -26.805 2.433 31.392 Atomic orbital electron populations 1.21753 0.94320 1.01985 1.02449 1.20629 0.96472 0.92258 1.03313 1.20169 0.96205 0.96283 0.93144 1.20967 1.00774 0.94526 0.97975 1.21294 0.97261 0.94967 0.96804 1.19859 1.05402 0.93682 0.94793 1.18038 0.77625 0.85340 0.82947 1.90794 1.49333 1.66983 1.30593 1.46895 1.66112 1.11168 1.08745 1.74704 1.12972 0.92075 1.25589 1.25527 0.93424 0.98186 0.90347 1.21424 1.03986 0.99628 0.97200 1.20716 0.98778 0.87330 1.03755 1.21636 0.91912 1.01704 0.98900 1.19119 0.95735 0.89334 0.97508 1.21281 1.01181 0.93352 1.40040 0.92665 1.25023 0.97965 0.95811 0.95678 1.69972 1.37807 0.98381 1.47219 0.86556 0.84658 0.78002 0.78897 1.19796 1.21050 1.21025 1.21289 0.94261 0.93903 0.97730 1.21049 1.00657 0.94588 0.97973 0.92153 0.92415 0.92371 0.90634 0.90673 0.85312 0.85857 0.77933 0.89879 0.88652 0.92207 0.89601 0.89952 0.93078 0.92963 0.96338 0.96287 0.93065 0.84311 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.89 37.16 0.37 -0.27 16 2 C -0.09 -0.42 6.06 -27.88 -0.17 -0.58 16 3 C -0.06 -0.40 5.14 -104.53 -0.54 -0.93 16 4 C -0.12 -0.86 9.68 -39.64 -0.38 -1.25 16 5 C -0.08 -0.70 9.54 -39.18 -0.37 -1.08 16 6 C -0.13 -1.48 5.87 -104.97 -0.62 -2.10 16 7 C 0.57 8.56 7.89 -12.35 -0.10 8.47 16 8 O -0.50 -9.61 16.68 5.30 0.09 -9.53 16 9 N -0.59 -8.16 6.04 30.52 0.18 -7.97 16 10 N -0.25 -4.20 10.93 35.60 0.39 -3.81 16 11 C 0.12 1.75 6.55 -78.91 -0.52 1.23 16 12 C -0.16 -1.73 9.46 36.01 0.34 -1.39 16 13 C -0.07 -1.10 5.60 -27.89 -0.16 -1.25 16 14 C -0.10 -2.03 5.03 -26.73 -0.13 -2.16 16 15 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 16 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 20 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 C -0.05 -0.53 9.60 -39.18 -0.38 -0.91 16 25 C -0.12 -0.96 9.68 -39.64 -0.38 -1.34 16 26 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.30 8.08 -51.93 -0.42 -0.12 16 30 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 32 H 0.12 0.77 6.41 -52.49 -0.34 0.43 16 33 H 0.38 3.89 4.42 -182.59 -0.81 3.08 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.01 6.91 -51.93 -0.36 0.65 16 36 H 0.06 0.54 6.31 -51.93 -0.33 0.21 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.95 7.01 -51.93 -0.36 0.59 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.14 1.44 7.65 -52.49 -0.40 1.04 16 45 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 377.62 15.07 5.69 5.69 Total: -1.00 -34.77 377.62 -9.14 -43.91 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.62 Total: -2.18 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -3.59 Total: -16.63 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 1.31 Total: -37.91 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.77 -9.14 -43.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841613197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.977 kcal (2) G-P(sol) polarization free energy of solvation -34.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds