Wall clock time and date at job start Tue Mar 31 2020 07:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36937 * 119.99460 * 2 1 4 4 H 1.07999 * 119.99781 * 202.26977 * 3 2 1 5 5 C 1.38807 * 120.00436 * 22.27461 * 3 2 1 6 6 N 1.31621 * 119.99764 * 11.30474 * 5 3 2 7 7 Si 1.86801 * 119.99988 * 191.31397 * 5 3 2 8 8 H 1.48494 * 109.47262 * 59.99703 * 7 5 3 9 9 H 1.48501 * 109.46868 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47167 * 299.99219 * 7 5 3 11 11 C 1.46495 * 120.00286 * 180.02562 * 2 1 3 12 12 N 1.46502 * 109.47087 * 269.99854 * 11 2 1 13 13 C 1.46756 * 124.34835 * 270.19458 * 12 11 2 14 14 C 1.54475 * 105.53322 * 163.21726 * 13 12 11 15 15 C 1.53003 * 110.97327 * 143.33081 * 14 13 12 16 16 C 1.53007 * 110.96796 * 267.08787 * 14 13 12 17 17 C 1.50699 * 109.46931 * 173.83363 * 16 14 13 18 18 C 1.38235 * 120.00012 * 269.72381 * 17 16 14 19 19 C 1.38232 * 120.00277 * 179.74763 * 18 17 16 20 20 C 1.38244 * 119.99742 * 0.53016 * 19 18 17 21 21 C 1.38234 * 119.99738 * 359.75012 * 20 19 18 22 22 C 1.38231 * 120.00179 * 90.00675 * 17 16 14 23 23 C 1.54623 * 101.76707 * 25.20769 * 14 13 12 24 24 C 1.34416 * 124.34787 * 90.02589 * 12 11 2 25 25 O 1.21283 * 124.94525 * 0.42740 * 24 12 11 26 26 H 1.09007 * 109.47443 * 274.30959 * 1 2 3 27 27 H 1.08996 * 109.47366 * 34.31619 * 1 2 3 28 28 H 1.09003 * 109.46930 * 154.31467 * 1 2 3 29 29 H 0.97006 * 120.00136 * 179.97438 * 6 5 3 30 30 H 1.09001 * 109.47564 * 149.99680 * 11 2 1 31 31 H 1.09008 * 109.47303 * 29.99736 * 11 2 1 32 32 H 1.08998 * 110.39131 * 44.10432 * 13 12 11 33 33 H 1.08997 * 110.11498 * 282.18289 * 13 12 11 34 34 H 1.09009 * 109.46307 * 306.16619 * 15 14 13 35 35 H 1.08994 * 109.47345 * 66.15930 * 15 14 13 36 36 H 1.08998 * 109.47410 * 186.16852 * 15 14 13 37 37 H 1.09001 * 109.47232 * 293.83592 * 16 14 13 38 38 H 1.08998 * 109.46682 * 53.83002 * 16 14 13 39 39 H 1.08001 * 119.99687 * 0.02562 * 18 17 16 40 40 H 1.07995 * 120.00598 * 180.29928 * 19 18 17 41 41 H 1.07997 * 120.00005 * 179.76955 * 20 19 18 42 42 H 1.07998 * 120.00141 * 179.97438 * 21 20 19 43 43 H 1.08007 * 119.99981 * 359.97438 * 22 17 16 44 44 H 1.09007 * 110.48799 * 216.52901 * 23 14 13 45 45 H 1.09002 * 110.59983 * 93.93621 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1691 1.2209 -0.3545 5 6 1.5332 2.3432 0.4556 6 7 0.3824 2.2698 1.0903 7 14 2.3368 4.0048 0.1678 8 1 2.4939 4.2326 -1.2911 9 1 1.4837 5.0740 0.7463 10 1 3.6710 4.0289 0.8192 11 6 2.1975 -1.2686 -0.0006 12 7 2.4417 -1.6921 1.3805 13 6 3.6271 -1.3223 2.1627 14 6 3.2585 -1.6123 3.6345 15 6 4.4658 -2.1496 4.4057 16 6 2.6898 -0.3642 4.3126 17 6 2.2027 -0.7206 5.6935 18 6 0.8956 -1.1293 5.8813 19 6 0.4502 -1.4613 7.1471 20 6 1.3090 -1.3741 8.2269 21 6 2.6145 -0.9599 8.0399 22 6 3.0614 -0.6334 6.7732 23 6 2.1719 -2.7012 3.4788 24 6 1.6073 -2.4667 2.0950 25 8 0.5571 -2.9165 1.6879 26 1 -0.3634 0.0772 1.0248 27 1 -0.3634 0.8487 -0.5793 28 1 -0.3633 -0.9261 -0.4454 29 1 -0.0482 3.0784 1.4091 30 1 3.1499 -1.1381 -0.5144 31 1 1.6084 -2.0282 -0.5147 32 1 3.8534 -0.2641 2.0319 33 1 4.4801 -1.9300 1.8607 34 1 4.8775 -3.0118 3.8810 35 1 5.2259 -1.3718 4.4787 36 1 4.1541 -2.4482 5.4066 37 1 3.4678 0.3957 4.3866 38 1 1.8589 0.0229 3.7229 39 1 0.2235 -1.1935 5.0383 40 1 -0.5696 -1.7851 7.2931 41 1 0.9600 -1.6299 9.2164 42 1 3.2854 -0.8913 8.8835 43 1 4.0815 -0.3101 6.6271 44 1 1.3956 -2.5763 4.2337 45 1 2.6130 -3.6957 3.5474 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842596270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:02 Heat of formation + Delta-G solvation = 12.260693 kcal Electronic energy + Delta-G solvation = -25824.748463 eV Core-core repulsion = 22421.616688 eV Total energy + Delta-G solvation = -3403.131775 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.34095 -38.87392 -36.37059 -35.59816 -33.45299 -31.44820 -30.87052 -30.44751 -28.23841 -26.76853 -26.10194 -25.91549 -24.39929 -22.39806 -21.40788 -21.25173 -19.15767 -18.82079 -16.76154 -16.53411 -15.92836 -15.77196 -15.06031 -15.01721 -14.84477 -14.29220 -14.06437 -13.65149 -13.48052 -13.28002 -13.12671 -13.06574 -12.61969 -12.40403 -12.25686 -12.14075 -11.82575 -11.52981 -11.27935 -11.24216 -10.96787 -10.91758 -10.74085 -10.66582 -10.61980 -10.44124 -10.18258 -10.04926 -9.99803 -9.04636 -8.78188 -8.63374 -8.53556 -7.96135 -6.95654 -5.79126 -3.28997 1.47771 1.50663 3.30223 3.34237 3.39549 3.40611 3.88637 3.96964 4.43330 4.63434 4.82122 4.98241 5.00017 5.05784 5.12080 5.23191 5.39036 5.42345 5.50857 5.58556 5.61566 5.66312 5.79319 5.86542 5.88813 5.99546 6.04340 6.08028 6.16949 6.18241 6.23350 6.29639 6.37940 6.40519 6.56377 6.58996 6.62863 6.86595 6.89013 7.13600 7.32742 7.47829 7.70940 7.82576 8.00321 8.31283 8.99780 9.14738 9.76059 10.26260 11.23475 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.013458 B = 0.005339 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.070419 B = 5243.626956 C = 5990.110810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.583 5.583 3 C -0.266 4.266 4 H 0.069 0.931 5 C 0.011 3.989 6 N -0.897 5.897 7 Si 0.903 3.097 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.358 3.642 12 N -0.611 5.611 13 C 0.112 3.888 14 C -0.063 4.063 15 C -0.135 4.135 16 C -0.070 4.070 17 C -0.065 4.065 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.156 4.156 24 C 0.515 3.485 25 O -0.552 6.552 26 H 0.029 0.971 27 H 0.044 0.956 28 H 0.002 0.998 29 H 0.254 0.746 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.097 0.903 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.467 -7.811 11.006 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.305 5.305 3 C -0.396 4.396 4 H 0.087 0.913 5 C -0.189 4.189 6 N -0.541 5.541 7 Si 0.733 3.267 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.150 3.850 12 N -0.350 5.350 13 C -0.013 4.013 14 C -0.063 4.063 15 C -0.192 4.192 16 C -0.107 4.107 17 C -0.065 4.065 18 C -0.131 4.131 19 C -0.137 4.137 20 C -0.150 4.150 21 C -0.142 4.142 22 C -0.135 4.135 23 C -0.196 4.196 24 C 0.302 3.698 25 O -0.430 6.430 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.020 0.980 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.116 0.884 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.759 -7.829 10.686 14.872 hybrid contribution 0.381 1.139 0.155 1.211 sum 7.140 -6.690 10.841 14.603 Atomic orbital electron populations 1.20802 0.81990 0.95668 0.99508 1.44705 1.02637 1.01169 1.82028 1.19147 0.98162 0.85275 1.36991 0.91282 1.25070 0.97434 0.98511 0.97875 1.70091 1.17404 1.27323 1.39241 0.86373 0.78531 0.83792 0.78001 1.20948 1.21609 1.20880 1.21174 0.95696 0.87462 0.80678 1.50479 1.20306 1.48489 1.15747 1.22114 0.88584 1.01662 0.88928 1.21382 0.95255 0.94801 0.94908 1.21830 0.96506 1.00696 1.00207 1.20647 1.02145 0.96181 0.91756 1.19934 0.93612 0.97472 0.95450 1.21208 0.95725 0.98882 0.97305 1.21140 0.99578 1.00129 0.92828 1.21067 0.94150 1.01174 0.98564 1.21074 0.95967 1.00174 0.96961 1.21048 0.99451 1.00730 0.92302 1.22666 0.99815 0.99654 0.97502 1.20787 0.83772 0.78014 0.87276 1.90641 1.22808 1.53844 1.75753 0.95251 0.93697 0.97970 0.93542 0.91605 0.91685 0.89885 0.92301 0.92518 0.92233 0.91972 0.90573 0.89209 0.85794 0.86336 0.86628 0.86550 0.86253 0.88441 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.28 9.01 59.85 0.54 4.82 16 2 N -0.58 -14.52 3.16 -184.86 -0.59 -15.10 16 3 C -0.27 -6.94 9.67 -15.06 -0.15 -7.09 16 4 H 0.07 1.73 7.84 -52.49 -0.41 1.32 16 5 C 0.01 0.29 5.13 -17.43 -0.09 0.20 16 6 N -0.90 -25.53 10.58 55.49 0.59 -24.94 16 7 Si 0.90 21.10 29.57 -169.99 -5.03 16.07 16 8 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 C 0.36 7.48 6.50 -63.75 -0.41 7.07 16 12 N -0.61 -11.79 3.17 -176.13 -0.56 -12.35 16 13 C 0.11 1.76 6.47 -3.13 -0.02 1.74 16 14 C -0.06 -0.88 0.70 -152.88 -0.11 -0.98 16 15 C -0.13 -1.45 7.93 37.16 0.29 -1.16 16 16 C -0.07 -1.08 4.47 -27.88 -0.12 -1.20 16 17 C -0.06 -0.91 4.31 -104.63 -0.45 -1.36 16 18 C -0.11 -1.65 7.86 -39.58 -0.31 -1.96 16 19 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 20 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 21 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 22 C -0.12 -1.42 8.11 -39.58 -0.32 -1.74 16 23 C -0.16 -2.42 5.81 -26.74 -0.16 -2.58 16 24 C 0.52 10.33 8.02 -10.86 -0.09 10.24 16 25 O -0.55 -13.13 17.59 5.55 0.10 -13.04 16 26 H 0.03 0.84 7.41 -51.93 -0.39 0.45 16 27 H 0.04 1.22 7.19 -51.93 -0.37 0.85 16 28 H 0.00 0.04 7.84 -51.93 -0.41 -0.36 16 29 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 31 H 0.07 1.36 7.64 -51.92 -0.40 0.97 16 32 H 0.08 1.46 7.91 -51.93 -0.41 1.05 16 33 H 0.06 0.79 7.84 -51.93 -0.41 0.38 16 34 H 0.06 0.56 8.08 -51.92 -0.42 0.14 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.66 6.55 -51.93 -0.34 0.32 16 37 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 38 H 0.09 1.79 8.08 -51.93 -0.42 1.37 16 39 H 0.12 1.98 7.48 -52.49 -0.39 1.58 16 40 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 44 H 0.10 1.55 4.85 -51.93 -0.25 1.29 16 45 H 0.09 1.25 7.90 -51.93 -0.41 0.84 16 LS Contribution 360.97 15.07 5.44 5.44 Total: -1.00 -30.94 360.97 -9.75 -40.69 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.11 Total: 2.79 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -2.59 Total: 0.44 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.56 Total: -52.39 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.10 Total: -13.04 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.94 -9.75 -40.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842596270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.949 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds