Wall clock time and date at job start Tue Mar 31 2020 07:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47140 * 2 1 4 4 C 1.38361 * 119.85639 * 90.00014 * 3 2 1 5 5 C 1.37951 * 120.14689 * 180.02562 * 4 3 2 6 6 C 1.39578 * 119.85368 * 359.96878 * 5 4 3 7 7 C 1.47848 * 120.14422 * 179.97438 * 6 5 4 8 8 O 1.21554 * 119.99964 * 340.38868 * 7 6 5 9 9 N 1.34777 * 120.00017 * 160.38934 * 7 6 5 10 10 C 1.47426 * 125.64695 * 356.09485 * 9 7 6 11 11 C 1.55120 * 104.94263 * 203.96738 * 10 9 7 12 12 C 1.55150 * 101.48712 * 323.22516 * 11 10 9 13 13 H 1.09002 * 110.71944 * 276.83188 * 12 11 10 14 14 N 1.46500 * 110.71923 * 153.73568 * 12 11 10 15 15 C 1.46502 * 119.99792 * 302.43205 * 14 12 11 16 16 C 1.36932 * 120.00234 * 122.44367 * 14 12 11 17 17 H 1.08009 * 120.00089 * 325.08582 * 16 14 12 18 18 C 1.38809 * 120.00506 * 145.36103 * 16 14 12 19 19 N 1.31619 * 120.00528 * 167.46272 * 18 16 14 20 20 Si 1.86804 * 119.99632 * 347.46829 * 18 16 14 21 21 H 1.48493 * 109.47254 * 84.00137 * 20 18 16 22 22 H 1.48502 * 109.47013 * 204.00110 * 20 18 16 23 23 H 1.48497 * 109.47123 * 323.99573 * 20 18 16 24 24 C 1.47019 * 125.64782 * 176.05517 * 9 7 6 25 25 C 1.39573 * 119.71255 * 0.26117 * 6 5 4 26 26 C 1.37962 * 119.84625 * 359.51321 * 25 6 5 27 27 H 1.09001 * 109.47285 * 59.99929 * 1 2 3 28 28 H 1.09005 * 109.47221 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47356 * 300.00036 * 1 2 3 30 30 H 1.08993 * 109.47555 * 240.00279 * 2 1 3 31 31 H 1.09003 * 109.47229 * 119.99288 * 2 1 3 32 32 H 1.07999 * 119.92784 * 359.97324 * 4 3 2 33 33 H 1.08001 * 120.07680 * 179.97438 * 5 4 3 34 34 H 1.09004 * 110.36851 * 322.93776 * 10 9 7 35 35 H 1.09003 * 110.36475 * 85.25679 * 10 9 7 36 36 H 1.08998 * 111.16260 * 205.13173 * 11 10 9 37 37 H 1.09001 * 110.93382 * 81.22250 * 11 10 9 38 38 H 1.08997 * 109.47574 * 275.00218 * 15 14 12 39 39 H 1.09000 * 109.46649 * 35.01140 * 15 14 12 40 40 H 1.09002 * 109.46706 * 154.99666 * 15 14 12 41 41 H 0.96997 * 120.00212 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.88253 * 59.56437 * 24 9 7 43 43 H 1.08993 * 110.01130 * 298.46102 * 24 9 7 44 44 H 1.07997 * 120.07617 * 179.71963 * 25 6 5 45 45 H 1.08007 * 119.92452 * 180.23111 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2619 2.0702 1.2000 5 6 2.7212 3.3710 1.2070 6 6 2.9550 4.0318 -0.0001 7 6 3.4468 5.4261 -0.0001 8 8 3.3152 6.1170 0.9914 9 7 4.0409 5.9311 -1.0993 10 6 4.3373 5.1845 -2.3355 11 6 5.5080 5.9568 -2.9982 12 6 5.1360 7.4261 -2.6665 13 1 4.4164 7.8138 -3.3876 14 7 6.3342 8.2682 -2.6287 15 6 7.4309 7.9410 -1.7141 16 6 6.4290 9.3613 -3.4480 17 1 5.9980 9.3332 -4.4380 18 6 7.0839 10.5035 -3.0085 19 7 7.3931 11.4551 -3.8635 20 14 7.5265 10.6900 -1.2032 21 1 8.8118 9.9964 -0.9345 22 1 7.6635 12.1314 -0.8735 23 1 6.4561 10.0905 -0.3666 24 6 4.5000 7.3180 -1.2646 25 6 2.7168 3.3726 -1.2070 26 6 2.2619 2.0702 -1.1999 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5137 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 2.0803 1.5580 2.1332 33 1 2.8997 3.8770 2.1443 34 1 4.6399 4.1644 -2.0993 35 1 3.4685 5.1805 -2.9938 36 1 5.5280 5.7925 -4.0756 37 1 6.4610 5.6831 -2.5453 38 1 7.2260 8.3695 -0.7331 39 1 7.5199 6.8582 -1.6264 40 1 8.3628 8.3518 -2.1027 41 1 7.8504 12.2534 -3.5563 42 1 5.2414 7.5564 -0.5019 43 1 3.6552 8.0023 -1.1870 44 1 2.8913 3.8799 -2.1444 45 1 2.0807 1.5577 -2.1332 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980304482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:28 Heat of formation + Delta-G solvation = 25.242648 kcal Electronic energy + Delta-G solvation = -24521.556611 eV Core-core repulsion = 21118.987775 eV Total energy + Delta-G solvation = -3402.568836 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.49892 -38.95115 -37.50691 -35.13561 -34.35650 -31.94892 -31.20137 -30.46115 -29.80279 -28.14822 -26.27477 -25.15191 -23.55982 -23.15280 -22.30717 -21.25817 -19.88380 -19.32113 -17.31265 -17.12880 -16.29907 -16.05791 -15.81081 -15.28917 -15.01855 -14.39246 -14.24809 -14.12751 -13.85762 -13.57841 -13.48529 -13.41966 -12.99151 -12.85488 -12.51032 -12.29796 -12.28176 -12.02398 -11.92803 -11.68465 -11.51005 -11.28685 -11.09239 -11.01672 -10.70572 -10.33806 -10.26669 -9.98503 -9.79712 -9.58524 -9.17131 -8.94253 -8.67759 -8.42727 -6.97021 -6.01659 -3.50881 0.72637 1.17418 2.83562 3.08632 3.32566 3.47318 3.50575 3.69671 4.34702 4.47839 4.48574 4.55279 4.69203 4.79859 4.83288 4.96841 4.99339 5.13050 5.17395 5.20163 5.26086 5.28935 5.36716 5.51555 5.58178 5.58731 5.68065 5.70628 5.79657 5.83056 5.83803 6.09643 6.10057 6.17712 6.18499 6.29061 6.31737 6.34922 6.46485 6.60226 6.62614 6.70237 6.76566 7.66126 7.95548 8.26724 8.29197 8.86315 9.63471 9.98696 11.13631 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.034425 B = 0.003057 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.167375 B = 9158.034565 C = 9619.788437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.064 4.064 4 C -0.128 4.128 5 C -0.060 4.060 6 C -0.129 4.129 7 C 0.566 3.434 8 O -0.542 6.542 9 N -0.607 5.607 10 C 0.094 3.906 11 C -0.154 4.154 12 C 0.173 3.827 13 H 0.090 0.910 14 N -0.596 5.596 15 C 0.097 3.903 16 C -0.272 4.272 17 H 0.086 0.914 18 C 0.033 3.967 19 N -0.908 5.908 20 Si 0.897 3.103 21 H -0.286 1.286 22 H -0.304 1.304 23 H -0.273 1.273 24 C 0.084 3.916 25 C -0.099 4.099 26 C -0.128 4.128 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.011 0.989 39 H 0.035 0.965 40 H 0.061 0.939 41 H 0.265 0.735 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.146 0.854 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.882 -23.697 5.129 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.064 4.064 4 C -0.146 4.146 5 C -0.079 4.079 6 C -0.132 4.132 7 C 0.355 3.645 8 O -0.421 6.421 9 N -0.340 5.340 10 C -0.029 4.029 11 C -0.194 4.194 12 C 0.064 3.936 13 H 0.108 0.892 14 N -0.318 5.318 15 C -0.048 4.048 16 C -0.400 4.400 17 H 0.103 0.897 18 C -0.167 4.167 19 N -0.550 5.550 20 Si 0.727 3.273 21 H -0.213 1.213 22 H -0.232 1.232 23 H -0.198 1.198 24 C -0.040 4.040 25 C -0.117 4.117 26 C -0.145 4.145 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.029 0.971 39 H 0.053 0.947 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.163 0.837 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.867 -23.127 5.674 26.175 hybrid contribution 0.325 0.287 1.070 1.155 sum -10.543 -22.839 6.744 26.044 Atomic orbital electron populations 1.21752 0.94486 1.01805 1.02432 1.20600 0.96355 0.92481 1.03074 1.20121 0.96835 0.96173 0.93257 1.20981 1.01161 0.94711 0.97775 1.21247 0.95084 0.93916 0.97652 1.19938 1.04522 0.94234 0.94504 1.18017 0.77968 0.86551 0.81943 1.90771 1.57706 1.61022 1.32612 1.48396 1.58505 1.12790 1.14281 1.22744 0.98215 0.96248 0.85720 1.23394 0.97479 0.97579 1.00937 1.21489 0.89401 0.89833 0.92924 0.89210 1.44070 1.12242 1.30015 1.45430 1.21452 0.92084 0.98037 0.93180 1.18865 1.36319 0.89431 0.95434 0.89679 1.25453 0.98737 0.95116 0.97443 1.69762 1.42215 1.09101 1.33895 0.86833 0.78531 0.75338 0.86562 1.21265 1.23216 1.19836 1.22866 0.99289 0.80686 1.01145 1.22082 0.96467 0.94768 0.98427 1.20998 1.00997 0.94841 0.97713 0.92406 0.92296 0.92459 0.90792 0.90871 0.85591 0.84924 0.90389 0.90988 0.89790 0.90469 0.97119 0.94668 0.92027 0.92543 0.91182 0.91575 0.83703 0.85553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 37.16 0.37 -0.48 16 2 C -0.09 -0.54 6.06 -27.88 -0.17 -0.71 16 3 C -0.06 -0.55 5.14 -104.53 -0.54 -1.09 16 4 C -0.13 -1.23 9.68 -39.64 -0.38 -1.61 16 5 C -0.06 -0.73 9.59 -39.19 -0.38 -1.10 16 6 C -0.13 -1.72 5.76 -104.97 -0.60 -2.32 16 7 C 0.57 9.54 7.70 -12.33 -0.09 9.44 16 8 O -0.54 -11.15 16.85 5.32 0.09 -11.06 16 9 N -0.61 -9.67 3.33 -171.49 -0.57 -10.25 16 10 C 0.09 1.14 4.94 -2.41 -0.01 1.13 16 11 C -0.15 -2.22 6.65 -24.47 -0.16 -2.38 16 12 C 0.17 3.20 3.43 -66.10 -0.23 2.98 16 13 H 0.09 1.66 7.95 -51.93 -0.41 1.25 16 14 N -0.60 -13.63 2.61 -171.39 -0.45 -14.08 16 15 C 0.10 2.09 7.32 59.85 0.44 2.53 16 16 C -0.27 -7.37 9.94 -15.06 -0.15 -7.52 16 17 H 0.09 2.45 8.06 -52.48 -0.42 2.02 16 18 C 0.03 0.94 5.33 -17.43 -0.09 0.84 16 19 N -0.91 -27.47 13.97 55.49 0.78 -26.69 16 20 Si 0.90 22.82 24.03 -169.99 -4.09 18.74 16 21 H -0.29 -6.99 6.64 56.52 0.38 -6.61 16 22 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 23 H -0.27 -6.96 6.65 56.52 0.38 -6.59 16 24 C 0.08 1.57 6.51 -3.06 -0.02 1.55 16 25 C -0.10 -1.06 8.08 -39.18 -0.32 -1.37 16 26 C -0.13 -1.13 9.68 -39.64 -0.38 -1.52 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.13 1.63 7.78 -52.49 -0.41 1.23 16 34 H 0.08 0.82 6.43 -51.93 -0.33 0.49 16 35 H 0.07 0.73 7.03 -51.93 -0.37 0.37 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.08 1.17 6.21 -51.93 -0.32 0.84 16 38 H 0.01 0.25 4.85 -51.93 -0.25 0.00 16 39 H 0.03 0.65 6.22 -51.93 -0.32 0.33 16 40 H 0.06 1.40 6.40 -51.93 -0.33 1.07 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.07 1.48 6.70 -51.93 -0.35 1.13 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.15 1.35 4.11 -52.49 -0.22 1.14 16 45 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 349.94 15.07 5.27 5.27 Total: -1.00 -32.71 349.94 -8.41 -41.13 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -6.72 Total: -1.45 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.72 Total: -1.62 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.24 Total: -51.01 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.09 Total: 18.74 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.71 -8.41 -41.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980304482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.369 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds