Wall clock time and date at job start Tue Mar 31 2020 07:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47232 * 2 1 4 4 C 1.38356 * 119.85259 * 90.00225 * 3 2 1 5 5 C 1.37956 * 120.14540 * 180.02562 * 4 3 2 6 6 C 1.39579 * 119.85195 * 0.02562 * 5 4 3 7 7 C 1.47849 * 120.14424 * 179.97438 * 6 5 4 8 8 O 1.21554 * 119.99848 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99964 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99878 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.49917 * 325.07048 * 10 9 7 12 12 C 1.53045 * 109.49779 * 205.00326 * 10 9 7 13 13 C 1.53034 * 109.53607 * 178.65490 * 12 10 9 14 14 C 1.53196 * 109.31636 * 61.36426 * 13 12 10 15 15 N 1.46929 * 108.77255 * 305.36157 * 14 13 12 16 16 C 1.36932 * 120.63237 * 233.58460 * 15 14 13 17 17 H 1.07990 * 120.00340 * 152.19317 * 16 15 14 18 18 C 1.38818 * 119.99695 * 332.19397 * 16 15 14 19 19 N 1.31620 * 120.00037 * 143.76745 * 18 16 15 20 20 Si 1.86799 * 119.99844 * 323.75740 * 18 16 15 21 21 H 1.48491 * 109.47487 * 270.00250 * 20 18 16 22 22 H 1.48506 * 109.46907 * 150.00273 * 20 18 16 23 23 H 1.48500 * 109.47391 * 30.00754 * 20 18 16 24 24 C 1.46922 * 118.73544 * 53.86436 * 15 14 13 25 25 C 1.39581 * 119.71016 * 0.25381 * 6 5 4 26 26 C 1.37957 * 119.85001 * 359.46646 * 25 6 5 27 27 H 1.08998 * 109.46978 * 299.99897 * 1 2 3 28 28 H 1.08998 * 109.46640 * 59.99521 * 1 2 3 29 29 H 1.08992 * 109.47053 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46978 * 240.00103 * 2 1 3 31 31 H 1.09001 * 109.47208 * 120.00015 * 2 1 3 32 32 H 1.08001 * 119.92881 * 0.02562 * 4 3 2 33 33 H 1.08002 * 120.07727 * 180.02562 * 5 4 3 34 34 H 0.97002 * 119.99687 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.45712 * 58.62933 * 12 10 9 36 36 H 1.09005 * 109.45447 * 298.67417 * 12 10 9 37 37 H 1.09006 * 109.49989 * 301.40925 * 13 12 10 38 38 H 1.09000 * 109.52352 * 181.33555 * 13 12 10 39 39 H 1.08999 * 109.58420 * 185.57596 * 14 13 12 40 40 H 1.08994 * 109.70095 * 65.21863 * 14 13 12 41 41 H 0.97002 * 119.99508 * 354.92902 * 19 18 16 42 42 H 1.08998 * 109.58991 * 65.92020 * 24 15 14 43 43 H 1.09003 * 109.58582 * 186.34861 * 24 15 14 44 44 H 1.07995 * 120.06880 * 179.72791 * 25 6 5 45 45 H 1.07997 * 119.92192 * 180.27117 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2620 2.0701 1.2000 5 6 2.7214 3.3709 1.2070 6 6 2.9540 4.0322 0.0000 7 6 3.4458 5.4265 0.0000 8 8 3.6489 5.9993 1.0527 9 7 3.6699 6.0620 -1.1672 10 6 4.1566 7.4438 -1.1671 11 1 3.7225 7.9824 -0.3249 12 6 3.7515 8.1281 -2.4747 13 6 4.2304 9.5815 -2.4614 14 6 5.7583 9.6106 -2.3537 15 7 6.1643 8.8308 -1.1765 16 6 6.9755 9.3815 -0.2207 17 1 6.9196 9.0343 0.8004 18 6 7.8698 10.3861 -0.5642 19 7 8.1104 11.3691 0.2774 20 14 8.7319 10.3427 -2.2208 21 1 10.0071 9.5923 -2.0957 22 1 9.0158 11.7302 -2.6675 23 1 7.8581 9.6714 -3.2162 24 6 5.6883 7.4468 -1.0476 25 6 2.7147 3.3733 -1.2070 26 6 2.2609 2.0705 -1.2000 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0813 1.5575 2.1332 33 1 2.9007 3.8766 2.1444 34 1 3.5082 5.6047 -2.0072 35 1 2.6665 8.1041 -2.5760 36 1 4.2062 7.6035 -3.3151 37 1 3.7955 10.1001 -1.6070 38 1 3.9211 10.0754 -3.3826 39 1 6.0973 10.6408 -2.2443 40 1 6.1982 9.1744 -3.2505 41 1 7.6093 11.4320 1.1056 42 1 6.1206 6.8363 -1.8403 43 1 5.9811 7.0487 -0.0760 44 1 2.8885 3.8809 -2.1443 45 1 2.0796 1.5582 -2.1332 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009385178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:22 Heat of formation + Delta-G solvation = -22.858021 kcal Electronic energy + Delta-G solvation = -24242.197759 eV Core-core repulsion = 20837.543122 eV Total energy + Delta-G solvation = -3404.654637 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43524 -39.97187 -38.95241 -36.10056 -35.10870 -34.36012 -32.62596 -32.02289 -31.24653 -29.86396 -26.92092 -25.75078 -24.13519 -23.62137 -23.43888 -22.51920 -21.40295 -21.09782 -19.37542 -18.95021 -17.47966 -16.84981 -16.42742 -16.39566 -15.99058 -15.86959 -15.84182 -15.54250 -15.01282 -14.86344 -14.62535 -14.41353 -14.28122 -14.16168 -14.03458 -13.63303 -13.41468 -13.38424 -12.75672 -12.66152 -12.52046 -12.21577 -12.07534 -11.95843 -11.80191 -11.70424 -11.68609 -11.40825 -11.18528 -11.03190 -10.54843 -10.24904 -9.98030 -9.71242 -9.04709 -8.63307 -5.48648 -0.18484 0.39247 1.50226 1.57269 1.77194 1.79640 2.04680 2.58259 2.84109 2.93416 3.43899 3.63735 3.77132 3.83633 3.91512 3.99306 4.01529 4.11768 4.27233 4.33652 4.40245 4.42331 4.53518 4.56221 4.63917 4.68792 4.75749 4.91870 4.93766 4.99480 5.01998 5.05268 5.11031 5.12314 5.13401 5.20057 5.30202 5.35439 5.38849 5.42646 5.53041 5.61383 5.79372 5.92659 6.21286 6.51140 6.88569 7.18696 7.57584 8.08828 8.71902 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.029543 B = 0.002880 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.554870 B = 9720.217649 C =10003.078223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.055 4.055 4 C -0.130 4.130 5 C -0.079 4.079 6 C -0.158 4.158 7 C 0.548 3.452 8 O -0.592 6.592 9 N -0.700 5.700 10 C 0.138 3.862 11 H 0.045 0.955 12 C -0.104 4.104 13 C -0.130 4.130 14 C 0.130 3.870 15 N -0.612 5.612 16 C -0.358 4.358 17 H 0.009 0.991 18 C -0.049 4.049 19 N -0.932 5.932 20 Si 1.073 2.927 21 H -0.298 1.298 22 H -0.293 1.293 23 H -0.226 1.226 24 C 0.143 3.857 25 C -0.076 4.076 26 C -0.124 4.124 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.113 0.887 34 H 0.416 0.584 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.038 0.962 38 H 0.101 0.899 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.249 0.751 42 H 0.045 0.955 43 H 0.017 0.983 44 H 0.153 0.847 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.847 -24.233 -10.986 32.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.056 4.056 4 C -0.148 4.148 5 C -0.098 4.098 6 C -0.161 4.161 7 C 0.337 3.663 8 O -0.474 6.474 9 N -0.352 5.352 10 C 0.031 3.969 11 H 0.063 0.937 12 C -0.142 4.142 13 C -0.169 4.169 14 C 0.006 3.994 15 N -0.337 5.337 16 C -0.487 4.487 17 H 0.027 0.973 18 C -0.247 4.247 19 N -0.571 5.571 20 Si 0.896 3.104 21 H -0.226 1.226 22 H -0.220 1.220 23 H -0.150 1.150 24 C 0.016 3.984 25 C -0.095 4.095 26 C -0.141 4.141 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.161 0.839 33 H 0.131 0.869 34 H 0.255 0.745 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.057 0.943 38 H 0.120 0.880 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.036 0.964 44 H 0.170 0.830 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.593 -23.051 -11.164 30.517 hybrid contribution -0.624 -0.220 2.130 2.231 sum -17.216 -23.271 -9.034 30.324 Atomic orbital electron populations 1.21748 0.93959 1.02648 1.02045 1.20685 0.96621 0.90712 1.04384 1.20511 0.94999 0.97334 0.92733 1.21214 1.00483 0.93627 0.99459 1.21307 0.96058 0.95251 0.97218 1.19870 1.07129 0.92933 0.96141 1.18945 0.76704 0.87059 0.83612 1.90784 1.54317 1.68995 1.33289 1.45762 1.66443 1.14365 1.08649 1.21396 0.94376 0.81510 0.99600 0.93654 1.21643 1.02008 0.95406 0.95132 1.21988 0.96080 0.96633 1.02217 1.21621 0.94269 0.94784 0.88720 1.44340 1.55710 1.09300 1.24360 1.19808 1.19365 1.21117 0.88440 0.97278 1.27476 0.96964 0.92250 1.08000 1.71012 1.45686 1.28003 1.12400 0.83938 0.76532 0.76020 0.73910 1.22585 1.21993 1.14985 1.21351 0.92874 0.86067 0.98066 1.21564 0.95976 0.95369 0.96582 1.21357 0.99632 0.94036 0.99092 0.93245 0.92401 0.90927 0.89103 0.90105 0.83854 0.86900 0.74463 0.89360 0.88871 0.94264 0.88047 0.93761 0.92714 0.94193 0.93730 0.96438 0.82964 0.82187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.90 71.98 0.71 -0.43 16 2 C -0.09 -0.73 6.06 29.85 0.18 -0.55 16 3 C -0.06 -0.78 5.14 -19.81 -0.10 -0.88 16 4 C -0.13 -2.35 9.68 22.23 0.22 -2.14 16 5 C -0.08 -2.00 9.60 22.53 0.22 -1.78 16 6 C -0.16 -4.02 5.87 -20.09 -0.12 -4.14 16 7 C 0.55 18.40 7.74 86.79 0.67 19.07 16 8 O -0.59 -26.80 16.01 -3.88 -0.06 -26.87 16 9 N -0.70 -19.56 5.03 -444.33 -2.24 -21.79 16 10 C 0.14 4.85 2.62 45.22 0.12 4.97 16 11 H 0.05 2.01 7.58 -2.39 -0.02 1.99 16 12 C -0.10 -2.74 5.35 30.62 0.16 -2.57 16 13 C -0.13 -4.14 6.08 30.67 0.19 -3.96 16 14 C 0.13 5.38 4.37 86.36 0.38 5.76 16 15 N -0.61 -30.71 2.71 -698.26 -1.89 -32.60 16 16 C -0.36 -22.03 9.70 84.04 0.82 -21.22 16 17 H 0.01 0.65 8.06 -2.92 -0.02 0.63 16 18 C -0.05 -3.01 4.81 84.86 0.41 -2.60 16 19 N -0.93 -61.17 13.70 21.65 0.30 -60.88 16 20 Si 1.07 51.72 27.00 68.60 1.85 53.57 16 21 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 22 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.23 -9.22 4.73 99.48 0.47 -8.75 16 24 C 0.14 6.25 6.12 86.51 0.53 6.78 16 25 C -0.08 -1.28 9.54 22.53 0.21 -1.06 16 26 C -0.12 -1.60 9.68 22.23 0.22 -1.39 16 27 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.09 0.51 8.08 -2.39 -0.02 0.49 16 31 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 32 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 33 H 0.11 3.25 7.65 -2.91 -0.02 3.23 16 34 H 0.42 7.62 6.64 -92.71 -0.62 7.01 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.04 2.03 5.82 -2.39 -0.01 2.01 16 40 H 0.06 2.02 6.59 -2.39 -0.02 2.01 16 41 H 0.25 16.73 8.73 -92.71 -0.81 15.92 16 42 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.02 0.88 7.93 -2.39 -0.02 0.86 16 44 H 0.15 1.62 6.41 -2.91 -0.02 1.60 16 45 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -83.35 358.48 2.86 -80.49 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.09 Total: 14.20 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 4.81 Total: -6.13 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -3.83 Total: -115.27 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.06 Total: -26.87 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 1.85 Total: 53.57 kcal Total: -83.35 2.86 -80.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009385178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.637 kcal (2) G-P(sol) polarization free energy of solvation -83.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds