Wall clock time and date at job start Tue Mar 31 2020 07:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38230 * 119.99896 * 269.72872 * 3 2 1 5 5 C 1.38238 * 119.99734 * 179.76790 * 4 3 2 6 6 C 1.38242 * 119.99727 * 0.50243 * 5 4 3 7 7 C 1.50701 * 119.99533 * 179.72642 * 6 5 4 8 8 C 1.50695 * 109.47411 * 270.02134 * 7 6 5 9 9 O 1.21286 * 119.99903 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00168 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99791 * 179.97438 * 10 8 7 12 12 H 1.08995 * 110.89226 * 328.88770 * 11 10 8 13 13 C 1.55157 * 111.00445 * 204.99982 * 11 10 8 14 14 C 1.54323 * 102.94384 * 277.43071 * 13 11 10 15 15 N 1.47018 * 107.26934 * 337.80545 * 14 13 11 16 16 C 1.36937 * 125.64625 * 178.98505 * 15 14 13 17 17 H 1.08001 * 120.00193 * 179.97438 * 16 15 14 18 18 C 1.38817 * 120.00251 * 359.97438 * 16 15 14 19 19 N 1.31616 * 119.99611 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00357 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46773 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47014 * 119.99600 * 20 18 16 23 23 H 1.48498 * 109.47314 * 239.99979 * 20 18 16 24 24 C 1.47426 * 108.70668 * 358.94127 * 15 14 13 25 25 C 1.38232 * 120.00050 * 359.75101 * 6 5 4 26 26 C 1.38233 * 119.99928 * 359.97438 * 25 6 5 27 27 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 32 32 H 1.07999 * 120.00202 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.00134 * 180.23585 * 5 4 3 34 34 H 1.09000 * 109.47383 * 30.02902 * 7 6 5 35 35 H 1.09001 * 109.46474 * 150.02326 * 7 6 5 36 36 H 0.96997 * 119.99711 * 0.02562 * 10 8 7 37 37 H 1.09003 * 110.71923 * 35.79345 * 13 11 10 38 38 H 1.09000 * 110.71890 * 159.06640 * 13 11 10 39 39 H 1.09003 * 109.87897 * 97.22318 * 14 13 11 40 40 H 1.09000 * 109.88332 * 218.23369 * 14 13 11 41 41 H 0.97005 * 120.00145 * 179.97438 * 19 18 16 42 42 H 1.09000 * 110.36357 * 265.29191 * 24 15 14 43 43 H 1.08999 * 110.36725 * 142.96419 * 24 15 14 44 44 H 1.08002 * 119.99819 * 179.97438 * 25 6 5 45 45 H 1.08003 * 119.99863 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7243 3.3755 -1.1971 6 6 2.9547 4.0272 0.0002 7 6 3.4579 5.4477 0.0001 8 6 4.9648 5.4468 0.0001 9 8 5.5706 4.3961 -0.0003 10 7 5.6394 6.6136 0.0006 11 6 7.1044 6.6126 0.0012 12 1 7.4923 5.7405 0.5273 13 6 7.6612 7.9249 0.6138 14 6 7.6046 8.9111 -0.5719 15 7 7.5899 8.1107 -1.8050 16 6 7.5230 8.6087 -3.0789 17 1 7.5183 7.9346 -3.9227 18 6 7.4611 9.9800 -3.2858 19 7 7.4663 10.8015 -2.2575 20 14 7.3705 10.6593 -5.0235 21 1 7.3800 9.5362 -5.9951 22 1 6.1193 11.4428 -5.1840 23 1 8.5408 11.5387 -5.2728 24 6 7.6603 6.6833 -1.4431 25 6 2.7239 3.3756 1.1972 26 6 2.2623 2.0726 1.1972 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.0926 1.5599 -2.1324 33 1 2.9048 3.8845 -2.1324 34 1 3.0948 5.9618 -0.8898 35 1 3.0948 5.9616 0.8901 36 1 5.1549 7.4539 0.0013 37 1 7.0273 8.2681 1.4314 38 1 8.6881 7.7872 0.9522 39 1 6.6982 9.5135 -0.5100 40 1 8.4814 9.5585 -0.5578 41 1 7.4235 11.7597 -2.4020 42 1 8.6930 6.3358 -1.4695 43 1 7.0420 6.0902 -2.1169 44 1 2.9043 3.8846 2.1326 45 1 2.0824 1.5634 2.1325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015775112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:15 Heat of formation + Delta-G solvation = -1.675034 kcal Electronic energy + Delta-G solvation = -24024.646749 eV Core-core repulsion = 20620.910675 eV Total energy + Delta-G solvation = -3403.736074 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.99908 -39.00764 -37.19419 -34.69136 -33.67724 -31.97927 -31.14435 -30.92203 -29.20053 -27.74869 -26.68898 -24.46900 -23.41863 -22.74966 -21.16371 -20.28051 -20.04558 -19.71002 -17.14658 -16.60701 -16.35291 -15.88072 -15.64208 -15.12508 -14.64878 -14.63119 -13.94458 -13.85561 -13.80373 -13.70478 -13.35273 -13.21807 -12.92111 -12.57080 -12.13933 -11.96514 -11.86997 -11.78882 -11.78037 -11.33713 -10.97427 -10.93953 -10.90642 -10.88141 -10.69943 -10.35016 -10.11793 -9.95392 -9.69158 -9.54679 -8.88748 -8.72903 -8.51433 -8.49775 -6.83221 -5.73716 -3.06144 1.30971 1.43972 2.95907 3.37945 3.44419 3.46403 3.47379 3.89612 4.48774 4.57711 4.68898 4.77474 4.94065 4.99399 5.14369 5.16501 5.26649 5.33836 5.37072 5.44192 5.46551 5.49265 5.53840 5.58311 5.66176 5.77550 5.78530 5.84478 5.92140 6.05635 6.08076 6.22065 6.37953 6.40589 6.49569 6.53860 6.58595 6.62288 6.69496 7.01338 7.07706 7.52570 7.55086 7.78451 7.92938 8.23306 8.59210 9.20690 9.80593 10.46569 11.38294 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.002849 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.587619 B = 9824.077113 C =10540.155650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.088 4.088 4 C -0.117 4.117 5 C -0.101 4.101 6 C -0.062 4.062 7 C -0.105 4.105 8 C 0.514 3.486 9 O -0.543 6.543 10 N -0.705 5.705 11 C 0.128 3.872 12 H 0.089 0.911 13 C -0.154 4.154 14 C 0.176 3.824 15 N -0.604 5.604 16 C -0.223 4.223 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.924 5.924 20 Si 0.911 3.089 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.125 3.875 25 C -0.103 4.103 26 C -0.119 4.119 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.403 0.597 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.046 0.954 40 H 0.044 0.956 41 H 0.251 0.749 42 H 0.027 0.973 43 H 0.042 0.958 44 H 0.119 0.881 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.710 -15.129 8.343 21.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.088 4.088 4 C -0.135 4.135 5 C -0.119 4.119 6 C -0.062 4.062 7 C -0.145 4.145 8 C 0.300 3.700 9 O -0.420 6.420 10 N -0.356 5.356 11 C 0.023 3.977 12 H 0.107 0.893 13 C -0.193 4.193 14 C 0.051 3.949 15 N -0.331 5.331 16 C -0.352 4.352 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.572 5.572 20 Si 0.742 3.258 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.002 4.002 25 C -0.121 4.121 26 C -0.137 4.137 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.237 0.763 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.060 0.940 44 H 0.137 0.863 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.268 -15.673 8.232 21.538 hybrid contribution -0.127 1.026 -0.979 1.424 sum -12.395 -14.647 7.252 20.513 Atomic orbital electron populations 1.21746 0.94872 1.01494 1.02205 1.20527 0.96024 0.92894 1.02723 1.19840 0.99611 0.96058 0.93291 1.20943 1.00380 0.94773 0.97412 1.21005 0.98488 0.94829 0.97573 1.19286 0.98645 0.94806 0.93510 1.20696 0.93155 0.95385 1.05275 1.20397 0.89377 0.83958 0.76317 1.90694 1.70263 1.31248 1.49806 1.45851 1.07368 1.08323 1.74037 1.22111 0.79195 0.98473 0.97940 0.89337 1.23223 1.00371 0.96033 0.99643 1.21160 1.01193 0.90660 0.81873 1.44489 1.86941 0.99199 1.02464 1.19106 1.43009 0.90539 0.82500 0.90523 1.24781 1.02461 0.95881 0.97462 1.69962 1.57458 1.02036 1.27719 0.86052 0.77231 0.78796 0.83755 1.20556 1.21804 1.21788 1.21941 0.97234 0.87928 0.93103 1.20936 0.98973 0.94873 0.97340 1.20912 1.00608 0.94800 0.97344 0.92602 0.92576 0.92564 0.91194 0.91152 0.86315 0.86129 0.87880 0.88196 0.76297 0.91623 0.91044 0.93626 0.93819 0.93865 0.95564 0.94014 0.86342 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.08 -0.70 6.07 -27.88 -0.17 -0.87 16 3 C -0.09 -0.96 5.13 -104.62 -0.54 -1.49 16 4 C -0.12 -1.36 9.70 -39.58 -0.38 -1.74 16 5 C -0.10 -1.29 9.70 -39.58 -0.38 -1.67 16 6 C -0.06 -0.80 4.37 -104.62 -0.46 -1.26 16 7 C -0.11 -1.27 5.83 -29.04 -0.17 -1.44 16 8 C 0.51 8.20 7.82 -10.99 -0.09 8.11 16 9 O -0.54 -10.59 15.67 5.55 0.09 -10.50 16 10 N -0.71 -11.41 5.19 -51.73 -0.27 -11.68 16 11 C 0.13 2.31 3.43 -65.78 -0.23 2.08 16 12 H 0.09 1.57 7.54 -51.93 -0.39 1.18 16 13 C -0.15 -2.72 6.55 -24.90 -0.16 -2.88 16 14 C 0.18 4.07 5.36 -3.07 -0.02 4.06 16 15 N -0.60 -15.14 3.39 -170.07 -0.58 -15.71 16 16 C -0.22 -6.18 10.28 -15.06 -0.15 -6.33 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -26.55 10.31 55.49 0.57 -25.98 16 20 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 C 0.13 2.69 6.93 -2.53 -0.02 2.67 16 25 C -0.10 -1.24 9.70 -39.59 -0.38 -1.62 16 26 C -0.12 -1.31 9.70 -39.58 -0.38 -1.70 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 32 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.10 1.13 8.09 -51.93 -0.42 0.71 16 35 H 0.10 0.95 8.09 -51.93 -0.42 0.53 16 36 H 0.40 6.09 8.67 -40.82 -0.35 5.73 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.05 1.14 7.38 -51.93 -0.38 0.76 16 40 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 41 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 370.20 15.07 5.58 5.58 Total: -1.00 -32.37 370.20 -10.29 -42.65 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.39 Total: 3.81 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -3.26 Total: -5.14 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.27 Total: -53.37 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.37 -10.29 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015775112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.977 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds