Wall clock time and date at job start Tue Mar 31 2020 07:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38230 * 119.99896 * 269.72872 * 3 2 1 5 5 C 1.38238 * 119.99734 * 179.76790 * 4 3 2 6 6 C 1.38242 * 119.99727 * 0.50243 * 5 4 3 7 7 C 1.50701 * 119.99533 * 179.72642 * 6 5 4 8 8 C 1.50695 * 109.47411 * 270.02134 * 7 6 5 9 9 O 1.21286 * 119.99903 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00168 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99791 * 179.97438 * 10 8 7 12 12 H 1.08995 * 110.89226 * 328.88770 * 11 10 8 13 13 C 1.55157 * 111.00445 * 204.99982 * 11 10 8 14 14 C 1.54323 * 102.94384 * 277.43071 * 13 11 10 15 15 N 1.47018 * 107.26934 * 337.80545 * 14 13 11 16 16 C 1.36937 * 125.64625 * 178.98505 * 15 14 13 17 17 H 1.08001 * 120.00193 * 179.97438 * 16 15 14 18 18 C 1.38817 * 120.00251 * 359.97438 * 16 15 14 19 19 N 1.31616 * 119.99611 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00357 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46773 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47014 * 119.99600 * 20 18 16 23 23 H 1.48498 * 109.47314 * 239.99979 * 20 18 16 24 24 C 1.47426 * 108.70668 * 358.94127 * 15 14 13 25 25 C 1.38232 * 120.00050 * 359.75101 * 6 5 4 26 26 C 1.38233 * 119.99928 * 359.97438 * 25 6 5 27 27 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 32 32 H 1.07999 * 120.00202 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.00134 * 180.23585 * 5 4 3 34 34 H 1.09000 * 109.47383 * 30.02902 * 7 6 5 35 35 H 1.09001 * 109.46474 * 150.02326 * 7 6 5 36 36 H 0.96997 * 119.99711 * 0.02562 * 10 8 7 37 37 H 1.09003 * 110.71923 * 35.79345 * 13 11 10 38 38 H 1.09000 * 110.71890 * 159.06640 * 13 11 10 39 39 H 1.09003 * 109.87897 * 97.22318 * 14 13 11 40 40 H 1.09000 * 109.88332 * 218.23369 * 14 13 11 41 41 H 0.97005 * 120.00145 * 179.97438 * 19 18 16 42 42 H 1.09000 * 110.36357 * 265.29191 * 24 15 14 43 43 H 1.08999 * 110.36725 * 142.96419 * 24 15 14 44 44 H 1.08002 * 119.99819 * 179.97438 * 25 6 5 45 45 H 1.08003 * 119.99863 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7243 3.3755 -1.1971 6 6 2.9547 4.0272 0.0002 7 6 3.4579 5.4477 0.0001 8 6 4.9648 5.4468 0.0001 9 8 5.5706 4.3961 -0.0003 10 7 5.6394 6.6136 0.0006 11 6 7.1044 6.6126 0.0012 12 1 7.4923 5.7405 0.5273 13 6 7.6612 7.9249 0.6138 14 6 7.6046 8.9111 -0.5719 15 7 7.5899 8.1107 -1.8050 16 6 7.5230 8.6087 -3.0789 17 1 7.5183 7.9346 -3.9227 18 6 7.4611 9.9800 -3.2858 19 7 7.4663 10.8015 -2.2575 20 14 7.3705 10.6593 -5.0235 21 1 7.3800 9.5362 -5.9951 22 1 6.1193 11.4428 -5.1840 23 1 8.5408 11.5387 -5.2728 24 6 7.6603 6.6833 -1.4431 25 6 2.7239 3.3756 1.1972 26 6 2.2623 2.0726 1.1972 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.0926 1.5599 -2.1324 33 1 2.9048 3.8845 -2.1324 34 1 3.0948 5.9618 -0.8898 35 1 3.0948 5.9616 0.8901 36 1 5.1549 7.4539 0.0013 37 1 7.0273 8.2681 1.4314 38 1 8.6881 7.7872 0.9522 39 1 6.6982 9.5135 -0.5100 40 1 8.4814 9.5585 -0.5578 41 1 7.4235 11.7597 -2.4020 42 1 8.6930 6.3358 -1.4695 43 1 7.0420 6.0902 -2.1169 44 1 2.9043 3.8846 2.1326 45 1 2.0824 1.5634 2.1325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015775112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:14 Heat of formation + Delta-G solvation = -19.977689 kcal Electronic energy + Delta-G solvation = -24025.440411 eV Core-core repulsion = 20620.910675 eV Total energy + Delta-G solvation = -3404.529737 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.15070 -40.10968 -38.78049 -35.54525 -35.31884 -33.66279 -32.15685 -31.78379 -30.96052 -29.17803 -27.90125 -26.37434 -24.24275 -23.61644 -22.35999 -21.89834 -21.32462 -21.07158 -18.96179 -18.02251 -17.50201 -16.88183 -16.78083 -16.60164 -16.04900 -15.85137 -15.58739 -15.24021 -14.77411 -14.55844 -14.53421 -14.24548 -14.00996 -13.85075 -13.71490 -13.56232 -12.97964 -12.94117 -12.83634 -12.82014 -12.51780 -12.27152 -12.08718 -12.04055 -11.99529 -11.82343 -11.68661 -11.63252 -11.58761 -10.87453 -10.73078 -10.02270 -9.76942 -9.38850 -8.86758 -7.85907 -5.20032 0.42360 0.55500 1.45274 1.46144 1.56151 1.70590 2.29951 2.48543 2.93043 3.33125 3.67348 3.71823 3.79828 3.90984 3.96941 4.08258 4.13319 4.17295 4.23020 4.32994 4.49145 4.52669 4.60578 4.63370 4.68303 4.75246 4.76723 4.79387 4.89734 5.00191 5.04362 5.07316 5.10205 5.20399 5.25334 5.40286 5.44077 5.54094 5.61019 5.68951 5.71938 5.75817 5.77346 6.16373 6.19627 6.65616 7.11433 7.32560 7.76604 8.40921 9.24215 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.002849 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.587619 B = 9824.077113 C =10540.155650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.092 4.092 4 C -0.129 4.129 5 C -0.121 4.121 6 C -0.082 4.082 7 C -0.097 4.097 8 C 0.514 3.486 9 O -0.579 6.579 10 N -0.704 5.704 11 C 0.142 3.858 12 H 0.099 0.901 13 C -0.134 4.134 14 C 0.184 3.816 15 N -0.620 5.620 16 C -0.240 4.240 17 H 0.073 0.927 18 C -0.060 4.060 19 N -0.946 5.946 20 Si 0.975 3.025 21 H -0.272 1.272 22 H -0.289 1.289 23 H -0.293 1.293 24 C 0.122 3.878 25 C -0.114 4.114 26 C -0.126 4.126 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.132 0.868 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.130 0.870 36 H 0.409 0.591 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.022 0.978 40 H 0.008 0.992 41 H 0.248 0.752 42 H 0.028 0.972 43 H 0.027 0.973 44 H 0.133 0.867 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.828 -16.173 9.229 23.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.147 4.147 5 C -0.140 4.140 6 C -0.082 4.082 7 C -0.136 4.136 8 C 0.302 3.698 9 O -0.459 6.459 10 N -0.354 5.354 11 C 0.036 3.964 12 H 0.117 0.883 13 C -0.172 4.172 14 C 0.059 3.941 15 N -0.347 5.347 16 C -0.369 4.369 17 H 0.090 0.910 18 C -0.254 4.254 19 N -0.595 5.595 20 Si 0.803 3.197 21 H -0.197 1.197 22 H -0.216 1.216 23 H -0.220 1.220 24 C -0.004 4.004 25 C -0.132 4.132 26 C -0.144 4.144 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.149 0.851 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.148 0.852 36 H 0.244 0.756 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.041 0.959 40 H 0.026 0.974 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.151 0.849 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.402 -16.729 9.126 23.297 hybrid contribution 0.231 1.280 -1.274 1.821 sum -13.170 -15.450 7.851 21.767 Atomic orbital electron populations 1.21721 0.93924 1.02410 1.01939 1.20582 0.96763 0.91320 1.03428 1.20191 0.98771 0.97254 0.92976 1.21194 1.00399 0.94612 0.98524 1.21183 0.99397 0.95643 0.97736 1.19448 0.99521 0.95310 0.93916 1.20703 0.89989 0.95731 1.07184 1.21037 0.90870 0.83026 0.74834 1.90674 1.71375 1.32463 1.51420 1.45850 1.06654 1.08946 1.73940 1.21891 0.80372 0.98883 0.95290 0.88335 1.23077 1.02157 0.93977 0.97997 1.20953 0.98353 0.91332 0.83428 1.44716 1.86734 1.00924 1.02339 1.19376 1.42826 0.90908 0.83791 0.90958 1.25537 1.02624 0.96137 1.01060 1.70152 1.58142 1.01869 1.29350 0.85069 0.76851 0.78016 0.79730 1.19656 1.21555 1.21969 1.22055 0.97276 0.85883 0.95225 1.21207 0.98884 0.95449 0.97628 1.21241 1.00076 0.94711 0.98377 0.92658 0.91079 0.93052 0.90246 0.90715 0.85051 0.86392 0.86883 0.85201 0.75557 0.88651 0.89438 0.95947 0.97412 0.94304 0.95443 0.95504 0.84945 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.89 71.98 0.71 -1.04 16 2 C -0.08 -1.23 6.07 29.85 0.18 -1.04 16 3 C -0.09 -1.87 5.13 -19.86 -0.10 -1.97 16 4 C -0.13 -2.92 9.70 22.27 0.22 -2.70 16 5 C -0.12 -3.08 9.70 22.27 0.22 -2.86 16 6 C -0.08 -2.02 4.37 -19.86 -0.09 -2.11 16 7 C -0.10 -2.19 5.83 29.10 0.17 -2.02 16 8 C 0.51 15.79 7.82 87.66 0.69 16.48 16 9 O -0.58 -22.21 15.67 -3.05 -0.05 -22.26 16 10 N -0.70 -21.78 5.19 -435.97 -2.26 -24.04 16 11 C 0.14 4.91 3.43 46.38 0.16 5.07 16 12 H 0.10 3.31 7.54 -2.39 -0.02 3.29 16 13 C -0.13 -4.49 6.55 31.78 0.21 -4.28 16 14 C 0.18 8.58 5.36 86.73 0.47 9.05 16 15 N -0.62 -31.45 3.39 -691.98 -2.35 -33.79 16 16 C -0.24 -13.47 10.28 84.03 0.86 -12.61 16 17 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 18 C -0.06 -3.39 5.49 84.86 0.47 -2.92 16 19 N -0.95 -55.29 10.31 21.65 0.22 -55.07 16 20 Si 0.97 45.58 29.55 68.60 2.03 47.61 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 24 C 0.12 5.24 6.93 86.86 0.60 5.85 16 25 C -0.11 -2.56 9.70 22.27 0.22 -2.34 16 26 C -0.13 -2.58 9.70 22.27 0.22 -2.37 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 31 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 32 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.12 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.11 2.33 8.09 -2.39 -0.02 2.31 16 35 H 0.13 2.13 8.09 -2.39 -0.02 2.11 16 36 H 0.41 11.74 8.67 -92.71 -0.80 10.94 16 37 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.02 1.13 7.38 -2.39 -0.02 1.12 16 40 H 0.01 0.41 7.50 -2.39 -0.02 0.39 16 41 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 42 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 45 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -70.43 370.20 2.94 -67.49 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.16 Total: 21.89 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 5.19 Total: -1.83 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -4.39 Total: -112.91 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.05 Total: -22.26 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -70.43 2.94 -67.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015775112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.510 kcal (2) G-P(sol) polarization free energy of solvation -70.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds