Wall clock time and date at job start Tue Mar 31 2020 07:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47300 * 2 1 4 4 C 1.38257 * 119.99840 * 265.21007 * 3 2 1 5 5 C 1.38216 * 119.99891 * 180.23399 * 4 3 2 6 6 C 1.38257 * 119.99921 * 359.81055 * 5 4 3 7 7 C 1.38217 * 119.99987 * 359.97438 * 6 5 4 8 8 C 1.38212 * 120.00104 * 84.99909 * 3 2 1 9 9 C 1.50704 * 119.99989 * 359.97438 * 8 3 2 10 10 C 1.50702 * 109.46988 * 84.72718 * 9 8 3 11 11 O 1.21288 * 119.99912 * 359.97438 * 10 9 8 12 12 N 1.34769 * 120.00075 * 180.02562 * 10 9 8 13 13 C 1.47025 * 125.64727 * 0.02562 * 12 10 9 14 14 C 1.54324 * 107.27511 * 178.92140 * 13 12 10 15 15 C 1.55164 * 102.93878 * 337.80517 * 14 13 12 16 16 H 1.08997 * 111.00137 * 277.38878 * 15 14 13 17 17 N 1.46506 * 111.00115 * 153.57413 * 15 14 13 18 18 C 1.36929 * 119.99807 * 86.45508 * 17 15 14 19 19 H 1.08004 * 120.00341 * 0.27647 * 18 17 15 20 20 C 1.38815 * 120.00031 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99958 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47093 * 60.00562 * 22 20 18 24 24 H 1.48495 * 109.47002 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47239 * 300.00281 * 22 20 18 26 26 C 1.47425 * 125.65466 * 179.97438 * 12 10 9 27 27 H 1.09002 * 109.47545 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46700 * 300.00148 * 1 2 3 29 29 H 1.09000 * 109.47216 * 60.00042 * 1 2 3 30 30 H 1.09003 * 109.47071 * 239.99483 * 2 1 3 31 31 H 1.09002 * 109.46831 * 120.00307 * 2 1 3 32 32 H 1.07995 * 120.00347 * 0.06395 * 4 3 2 33 33 H 1.07997 * 119.99961 * 179.83814 * 5 4 3 34 34 H 1.08001 * 119.99839 * 180.02562 * 6 5 4 35 35 H 1.08000 * 119.99803 * 179.97438 * 7 6 5 36 36 H 1.08994 * 109.47003 * 324.72821 * 9 8 3 37 37 H 1.09002 * 109.46899 * 204.72172 * 9 8 3 38 38 H 1.09003 * 109.88417 * 59.50502 * 13 12 10 39 39 H 1.09000 * 110.01415 * 298.40805 * 13 12 10 40 40 H 1.08994 * 110.72159 * 219.44700 * 14 13 12 41 41 H 1.08994 * 110.87362 * 96.23841 * 14 13 12 42 42 H 0.96999 * 120.00076 * 266.45571 * 17 15 14 43 43 H 0.97000 * 120.00284 * 179.97438 * 21 20 18 44 44 H 1.09000 * 110.36918 * 85.30620 * 26 12 10 45 45 H 1.09005 * 110.36380 * 322.99157 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3571 2.0391 -1.1932 5 6 2.8224 3.3406 -1.1928 6 6 2.9595 4.0254 0.0005 7 6 2.6306 3.4086 1.1929 8 6 2.1644 2.1071 1.1924 9 6 1.8054 1.4348 2.4925 10 6 2.9820 0.6319 2.9845 11 8 4.0106 0.6075 2.3423 12 7 2.8909 -0.0599 4.1374 13 6 1.7090 -0.1193 5.0100 14 6 2.0583 -1.0480 6.1920 15 6 3.2189 -1.9086 5.6265 16 1 2.8363 -2.7398 5.0342 17 7 4.0879 -2.3907 6.7031 18 6 3.7832 -3.5526 7.3604 19 1 2.9047 -4.1160 7.0823 20 6 4.6068 -4.0097 8.3801 21 7 5.6803 -3.3260 8.7153 22 14 4.1914 -5.5951 9.2764 23 1 4.1637 -6.7193 8.3065 24 1 5.2199 -5.8612 10.3139 25 1 2.8602 -5.4649 9.9215 26 6 3.9593 -0.8834 4.7322 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.2497 1.5044 -2.1253 33 1 3.0785 3.8228 -2.1246 34 1 3.3227 5.0425 0.0007 35 1 2.7381 3.9434 2.1250 36 1 0.9537 0.7729 2.3362 37 1 1.5466 2.1913 3.2334 38 1 0.8608 -0.5246 4.4583 39 1 1.4683 0.8772 5.3802 40 1 1.2062 -1.6748 6.4548 41 1 2.3911 -0.4705 7.0544 42 1 4.8791 -1.8868 6.9501 43 1 6.2556 -3.6451 9.4281 44 1 4.6241 -0.2648 5.3350 45 1 4.5214 -1.3968 3.9519 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019027017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:14 Heat of formation + Delta-G solvation = -24.998721 kcal Electronic energy + Delta-G solvation = -24313.941014 eV Core-core repulsion = 20909.193549 eV Total energy + Delta-G solvation = -3404.747465 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.41327 -40.17098 -38.55402 -35.92286 -35.20116 -33.71059 -33.11841 -31.04423 -30.41231 -29.73591 -28.12411 -25.61569 -24.72783 -24.12963 -22.86877 -21.69532 -21.46120 -20.13690 -19.28167 -18.17103 -17.54945 -17.35646 -16.84676 -16.43222 -16.08865 -15.87443 -15.52932 -15.20898 -14.68021 -14.64198 -14.46662 -14.35795 -14.04423 -13.88264 -13.61022 -13.49940 -13.12983 -13.01811 -12.96484 -12.81660 -12.64313 -12.63049 -12.35846 -12.15147 -12.14587 -11.77475 -11.68533 -11.60450 -11.54554 -10.98273 -10.93271 -9.68348 -9.66478 -9.46735 -9.05363 -7.95101 -5.25531 0.43253 0.53101 1.49188 1.52051 1.57970 1.61056 1.96494 2.57280 2.88326 3.36149 3.60109 3.71985 3.72993 3.86036 3.96096 4.03206 4.09391 4.13883 4.26121 4.30927 4.32552 4.38348 4.48743 4.51412 4.52447 4.64579 4.71207 4.74403 4.76185 4.85247 5.00377 5.03942 5.09286 5.16419 5.22839 5.24181 5.26481 5.40551 5.43257 5.53954 5.60674 5.64182 5.76537 6.16092 6.25351 6.55149 7.13976 7.31999 8.03609 8.27650 9.28164 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.029367 B = 0.002757 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.228870 B =10153.701339 C =10468.672970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.078 4.078 4 C -0.132 4.132 5 C -0.124 4.124 6 C -0.135 4.135 7 C -0.120 4.120 8 C -0.082 4.082 9 C -0.090 4.090 10 C 0.525 3.475 11 O -0.583 6.583 12 N -0.614 5.614 13 C 0.106 3.894 14 C -0.144 4.144 15 C 0.165 3.835 16 H 0.060 0.940 17 N -0.730 5.730 18 C -0.241 4.241 19 H 0.082 0.918 20 C -0.075 4.075 21 N -0.971 5.971 22 Si 0.975 3.025 23 H -0.279 1.279 24 H -0.299 1.299 25 H -0.274 1.274 26 C 0.109 3.891 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.134 0.866 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.054 0.946 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.772 13.706 -17.864 26.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 C -0.078 4.078 4 C -0.150 4.150 5 C -0.142 4.142 6 C -0.153 4.153 7 C -0.138 4.138 8 C -0.082 4.082 9 C -0.130 4.130 10 C 0.316 3.684 11 O -0.462 6.462 12 N -0.348 5.348 13 C -0.016 4.016 14 C -0.185 4.185 15 C 0.055 3.945 16 H 0.078 0.922 17 N -0.370 5.370 18 C -0.372 4.372 19 H 0.100 0.900 20 C -0.267 4.267 21 N -0.621 5.621 22 Si 0.803 3.197 23 H -0.205 1.205 24 H -0.225 1.225 25 H -0.200 1.200 26 C -0.015 4.015 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.072 0.928 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.326 13.564 -18.218 26.853 hybrid contribution 0.926 -0.761 0.934 1.520 sum -13.400 12.803 -17.284 25.342 Atomic orbital electron populations 1.21741 0.92828 1.02591 1.02673 1.20567 0.97536 0.92135 1.02328 1.19930 0.98616 0.96222 0.93062 1.21261 1.00223 0.95774 0.97751 1.21433 0.99051 0.94761 0.98966 1.21379 1.00527 1.00991 0.92417 1.21255 0.98687 0.94707 0.99149 1.19345 1.00792 0.94506 0.93591 1.20736 0.96073 1.00174 0.95969 1.20847 0.89875 0.79004 0.78693 1.90705 1.33525 1.64894 1.57125 1.48548 1.16004 1.47849 1.22407 1.22255 0.87418 1.01267 0.90700 1.23200 1.00004 0.98111 0.97176 1.21445 0.90839 0.93618 0.88558 0.92162 1.42416 1.28785 1.26609 1.39186 1.19571 1.06909 0.99356 1.11372 0.90046 1.25593 0.97563 1.02482 1.01070 1.69818 1.16916 1.41753 1.33598 0.85199 0.77045 0.79560 0.77867 1.20504 1.22534 1.19951 1.22168 0.90717 0.92653 0.96008 0.91409 0.91915 0.91905 0.90910 0.92875 0.84765 0.84035 0.84249 0.85244 0.85834 0.85666 0.88593 0.89019 0.89567 0.91955 0.79471 0.94012 0.92777 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.72 71.98 0.70 -1.29 16 2 C -0.09 -1.74 5.38 29.85 0.16 -1.58 16 3 C -0.08 -1.73 5.13 -19.87 -0.10 -1.83 16 4 C -0.13 -2.64 9.68 22.27 0.22 -2.42 16 5 C -0.12 -2.28 10.05 22.27 0.22 -2.05 16 6 C -0.14 -2.57 10.05 22.27 0.22 -2.35 16 7 C -0.12 -2.55 9.68 22.27 0.22 -2.34 16 8 C -0.08 -1.85 4.37 -19.87 -0.09 -1.94 16 9 C -0.09 -1.80 4.35 29.10 0.13 -1.67 16 10 C 0.53 15.40 7.02 87.66 0.62 16.02 16 11 O -0.58 -22.57 16.29 -3.05 -0.05 -22.62 16 12 N -0.61 -17.69 3.33 -811.82 -2.70 -20.39 16 13 C 0.11 2.29 6.49 86.73 0.56 2.86 16 14 C -0.14 -4.27 6.65 31.79 0.21 -4.06 16 15 C 0.17 6.25 3.68 46.38 0.17 6.42 16 16 H 0.06 2.31 8.13 -2.39 -0.02 2.29 16 17 N -0.73 -35.91 5.28 -316.40 -1.67 -37.57 16 18 C -0.24 -12.89 9.98 84.04 0.84 -12.05 16 19 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 20 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 21 N -0.97 -58.90 13.06 21.65 0.28 -58.62 16 22 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 26 C 0.11 3.92 6.53 86.85 0.57 4.49 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.80 6.79 -2.38 -0.02 0.78 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 1.37 8.05 -2.39 -0.02 1.35 16 31 H 0.05 1.24 6.40 -2.39 -0.02 1.23 16 32 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 33 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.12 1.92 5.63 -2.39 -0.01 1.91 16 37 H 0.13 1.83 8.05 -2.39 -0.02 1.81 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.53 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 42 H 0.37 20.04 7.71 -92.71 -0.71 19.33 16 43 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 44 H 0.05 2.09 8.00 -2.39 -0.02 2.07 16 45 H 0.06 2.21 8.04 -2.38 -0.02 2.19 16 Total: -1.00 -71.03 367.13 3.26 -67.77 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: 0.26 Total: 31.83 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 5.11 Total: -7.54 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -4.09 Total: -116.59 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.05 Total: -22.62 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -71.03 3.26 -67.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019027017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.775 kcal (2) G-P(sol) polarization free energy of solvation -71.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds