Wall clock time and date at job start Tue Mar 31 2020 07:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47437 * 2 1 4 4 C 1.38356 * 119.85778 * 269.72768 * 3 2 1 5 5 C 1.37960 * 120.14594 * 179.76119 * 4 3 2 6 6 C 1.39581 * 119.84943 * 0.51464 * 5 4 3 7 7 C 1.47845 * 120.13810 * 179.72179 * 6 5 4 8 8 O 1.21550 * 119.99560 * 180.02562 * 7 6 5 9 9 N 1.34772 * 120.00405 * 0.02562 * 7 6 5 10 10 C 1.46502 * 120.00064 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47237 * 185.12930 * 10 9 7 12 12 H 1.09001 * 109.87668 * 300.96022 * 11 10 9 13 13 C 1.54329 * 109.88506 * 179.97438 * 11 10 9 14 14 C 1.55404 * 102.82910 * 218.48447 * 13 11 10 15 15 C 1.54909 * 101.66455 * 35.33746 * 14 13 11 16 16 N 1.47029 * 109.88159 * 61.96969 * 11 10 9 17 17 C 1.36934 * 125.64910 * 298.32338 * 16 11 10 18 18 H 1.08000 * 120.00003 * 336.78167 * 17 16 11 19 19 C 1.38816 * 120.00047 * 156.77717 * 17 16 11 20 20 N 1.31612 * 120.00024 * 159.21847 * 19 17 16 21 21 Si 1.86798 * 119.99855 * 339.21106 * 19 17 16 22 22 H 1.48501 * 109.46784 * 85.55060 * 21 19 17 23 23 H 1.48495 * 109.47082 * 205.54976 * 21 19 17 24 24 H 1.48495 * 109.47212 * 325.55163 * 21 19 17 25 25 C 1.39572 * 119.71129 * 359.73879 * 6 5 4 26 26 C 1.37951 * 119.85764 * 0.02562 * 25 6 5 27 27 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46831 * 299.99897 * 1 2 3 29 29 H 1.09000 * 109.47257 * 59.98965 * 1 2 3 30 30 H 1.08997 * 109.47204 * 240.00220 * 2 1 3 31 31 H 1.09005 * 109.47301 * 120.00313 * 2 1 3 32 32 H 1.07999 * 119.92436 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.07252 * 180.23243 * 5 4 3 34 34 H 0.97001 * 119.99858 * 359.97438 * 9 7 6 35 35 H 1.08992 * 109.47103 * 305.13427 * 10 9 7 36 36 H 1.09007 * 109.47172 * 65.13077 * 10 9 7 37 37 H 1.08993 * 110.71496 * 336.75662 * 13 11 10 38 38 H 1.08998 * 110.71756 * 100.02802 * 13 11 10 39 39 H 1.08997 * 110.88958 * 277.26704 * 14 13 11 40 40 H 1.08994 * 111.06740 * 153.48431 * 14 13 11 41 41 H 1.09005 * 110.36316 * 204.23688 * 15 14 13 42 42 H 1.08994 * 110.36732 * 81.91422 * 15 14 13 43 43 H 0.96995 * 120.00255 * 180.02562 * 20 19 17 44 44 H 1.07999 * 120.07240 * 179.97438 * 25 6 5 45 45 H 1.07997 * 119.92891 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2674 2.0683 -1.1999 5 6 2.7227 3.3706 -1.2069 6 6 2.9564 4.0313 0.0002 7 6 3.4502 5.4248 0.0002 8 8 3.6533 5.9976 1.0529 9 7 3.6751 6.0601 -1.1669 10 6 4.1649 7.4408 -1.1668 11 6 4.2134 7.9649 -2.6034 12 1 4.8691 7.3358 -3.2054 13 6 4.7278 9.4199 -2.6144 14 6 3.8545 10.0863 -3.7136 15 6 2.4997 9.3607 -3.5201 16 7 2.8605 7.9717 -3.1791 17 6 2.0678 6.8711 -3.3676 18 1 2.5147 5.8914 -3.4495 19 6 0.6898 7.0148 -3.4534 20 7 -0.0352 6.0773 -4.0260 21 14 -0.1357 8.5385 -2.7560 22 1 -0.1140 9.6217 -3.7715 23 1 -1.5421 8.2208 -2.4009 24 1 0.5930 8.9841 -1.5413 25 6 2.7223 3.3705 1.2071 26 6 2.2624 2.0699 1.2001 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0908 1.5542 -2.1331 33 1 2.9021 3.8761 -2.1442 34 1 3.5133 5.6029 -2.0070 35 1 3.4946 8.0641 -0.5751 36 1 5.1653 7.4715 -0.7350 37 1 4.5600 9.8954 -1.6481 38 1 5.7834 9.4536 -2.8839 39 1 4.2633 9.8927 -4.7053 40 1 3.7528 11.1571 -3.5375 41 1 1.9205 9.3861 -4.4432 42 1 1.9375 9.8177 -2.7058 43 1 -0.9980 6.1778 -4.0863 44 1 2.9016 3.8760 2.1445 45 1 2.0813 1.5574 2.1333 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028296541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:02 Heat of formation + Delta-G solvation = 2.768673 kcal Electronic energy + Delta-G solvation = -24980.329046 eV Core-core repulsion = 21576.785666 eV Total energy + Delta-G solvation = -3403.543380 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.84221 -38.53264 -37.67348 -34.08085 -33.90629 -32.69545 -30.80874 -30.02399 -29.99643 -28.80976 -25.28886 -24.39975 -23.48272 -22.35313 -21.56290 -20.90626 -19.79795 -19.44951 -17.69160 -16.69960 -15.90579 -15.66603 -15.37731 -15.08655 -14.72743 -14.52117 -14.36288 -13.61824 -13.55944 -13.38536 -13.20721 -13.08067 -13.00738 -12.65352 -12.54134 -12.26843 -11.73529 -11.65525 -11.32181 -11.23883 -11.18515 -10.99368 -10.96415 -10.73565 -10.67554 -10.53920 -10.08045 -10.00530 -9.53126 -9.36185 -8.76798 -8.74999 -8.59217 -8.25725 -7.10829 -6.05017 -3.38125 1.13444 1.61486 3.27915 3.31495 3.45872 3.50022 3.79753 4.20592 4.48570 4.75557 4.86737 4.87752 5.13939 5.16388 5.20379 5.22858 5.28626 5.32971 5.38571 5.52435 5.54408 5.59346 5.67221 5.79950 5.83523 5.89961 5.97178 6.06472 6.07810 6.10597 6.18947 6.21178 6.23229 6.30032 6.36580 6.56483 6.61369 6.64791 6.72436 6.74908 6.82013 7.06978 7.14162 7.62222 8.14314 8.22289 8.68184 8.81922 9.58746 10.10795 11.09993 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.015743 B = 0.004651 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.196968 B = 6018.490763 C = 7056.819974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.066 4.066 4 C -0.123 4.123 5 C -0.068 4.068 6 C -0.132 4.132 7 C 0.553 3.447 8 O -0.562 6.562 9 N -0.696 5.696 10 C 0.114 3.886 11 C 0.144 3.856 12 H 0.049 0.951 13 C -0.123 4.123 14 C -0.131 4.131 15 C 0.111 3.889 16 N -0.602 5.602 17 C -0.243 4.243 18 H 0.086 0.914 19 C 0.032 3.968 20 N -0.902 5.902 21 Si 0.883 3.117 22 H -0.286 1.286 23 H -0.303 1.303 24 H -0.275 1.275 25 C -0.062 4.062 26 C -0.134 4.134 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.409 0.591 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.024 0.976 43 H 0.264 0.736 44 H 0.131 0.869 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.629 -6.278 4.807 10.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 C -0.066 4.066 4 C -0.141 4.141 5 C -0.087 4.087 6 C -0.135 4.135 7 C 0.340 3.660 8 O -0.443 6.443 9 N -0.348 5.348 10 C -0.012 4.012 11 C 0.037 3.963 12 H 0.067 0.933 13 C -0.162 4.162 14 C -0.169 4.169 15 C -0.013 4.013 16 N -0.328 5.328 17 C -0.370 4.370 18 H 0.104 0.896 19 C -0.168 4.168 20 N -0.545 5.545 21 Si 0.714 3.286 22 H -0.212 1.212 23 H -0.231 1.231 24 H -0.201 1.201 25 C -0.081 4.081 26 C -0.152 4.152 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.249 0.751 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.042 0.958 43 H 0.074 0.926 44 H 0.149 0.851 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.550 -6.000 5.433 10.413 hybrid contribution -0.908 0.718 0.019 1.158 sum 5.642 -5.283 5.452 9.459 Atomic orbital electron populations 1.21758 0.94571 1.01546 1.02689 1.20570 0.96348 0.92609 1.02719 1.20065 0.97161 0.96116 0.93258 1.20972 1.00586 0.94883 0.97679 1.21456 0.95357 0.94344 0.97553 1.20020 1.04569 0.94535 0.94336 1.18264 0.77703 0.85943 0.84085 1.90685 1.53925 1.68121 1.31564 1.46006 1.65392 1.14673 1.08771 1.21940 0.97694 0.82453 0.99092 1.21332 0.88909 0.94884 0.91178 0.93296 1.22558 0.98967 0.95296 0.99333 1.22756 0.96843 0.98561 0.98738 1.21954 0.95045 0.85946 0.98397 1.44887 1.14313 1.03008 1.70576 1.18325 0.87259 0.86285 1.45159 0.89625 1.25042 0.95967 0.96903 0.98910 1.69792 1.06279 1.34951 1.43434 0.86937 0.77942 0.83466 0.80284 1.21245 1.23110 1.20096 1.21191 0.95421 0.93861 0.97659 1.20911 1.01871 0.94867 0.97507 0.92516 0.92535 0.92119 0.90925 0.91139 0.85554 0.85001 0.75057 0.91877 0.92840 0.91357 0.91238 0.91242 0.91704 0.92389 0.95811 0.92617 0.85073 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.89 37.16 0.37 -1.11 16 2 C -0.09 -0.86 6.06 -27.88 -0.17 -1.03 16 3 C -0.07 -0.86 5.14 -104.53 -0.54 -1.40 16 4 C -0.12 -1.79 9.68 -39.64 -0.38 -2.18 16 5 C -0.07 -1.15 9.54 -39.18 -0.37 -1.52 16 6 C -0.13 -2.37 5.87 -104.97 -0.62 -2.99 16 7 C 0.55 11.30 7.77 -12.33 -0.10 11.20 16 8 O -0.56 -12.77 16.34 5.32 0.09 -12.68 16 9 N -0.70 -13.74 4.78 -61.25 -0.29 -14.04 16 10 C 0.11 2.16 5.17 -4.04 -0.02 2.14 16 11 C 0.14 2.64 3.33 -66.95 -0.22 2.42 16 12 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 13 C -0.12 -1.85 6.50 -24.76 -0.16 -2.01 16 14 C -0.13 -2.06 7.09 -24.45 -0.17 -2.24 16 15 C 0.11 2.32 4.74 -2.49 -0.01 2.31 16 16 N -0.60 -13.46 2.88 -162.51 -0.47 -13.93 16 17 C -0.24 -6.24 8.90 -15.06 -0.13 -6.37 16 18 H 0.09 2.23 6.49 -52.49 -0.34 1.89 16 19 C 0.03 0.88 5.44 -17.43 -0.09 0.79 16 20 N -0.90 -26.26 13.97 55.49 0.78 -25.49 16 21 Si 0.88 22.57 24.33 -169.99 -4.14 18.43 16 22 H -0.29 -7.02 6.71 56.52 0.38 -6.64 16 23 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 24 H -0.28 -7.16 6.69 56.52 0.38 -6.78 16 25 C -0.06 -1.00 9.60 -39.19 -0.38 -1.38 16 26 C -0.13 -1.80 9.68 -39.64 -0.38 -2.18 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 31 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 32 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.13 2.25 6.41 -52.49 -0.34 1.92 16 34 H 0.41 8.01 3.91 -40.82 -0.16 7.85 16 35 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 36 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 37 H 0.07 0.99 7.85 -51.93 -0.41 0.59 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 1.28 7.12 -51.93 -0.37 0.92 16 42 H 0.02 0.53 5.44 -51.93 -0.28 0.25 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.13 2.06 7.65 -52.49 -0.40 1.65 16 45 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 355.94 15.07 5.36 5.36 Total: -1.00 -31.32 355.94 -9.03 -40.34 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.97 Total: 7.55 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -3.39 Total: -5.54 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.01 Total: -53.46 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.14 Total: 18.43 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.32 -9.03 -40.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028296541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.113 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds