Wall clock time and date at job start Tue Mar 31 2020 07:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47238 * 2 1 4 4 C 1.38354 * 119.85384 * 89.99641 * 3 2 1 5 5 C 1.37961 * 120.14520 * 180.02562 * 4 3 2 6 6 C 1.39579 * 119.84857 * 359.97438 * 5 4 3 7 7 C 1.47852 * 120.14178 * 180.02562 * 6 5 4 8 8 O 1.21549 * 119.99894 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99797 * 180.27166 * 7 6 5 10 10 C 1.46505 * 119.99878 * 179.72387 * 9 7 6 11 11 C 1.52999 * 109.46810 * 185.13761 * 10 9 7 12 12 H 1.09001 * 109.87625 * 303.58520 * 11 10 9 13 13 C 1.54315 * 109.88517 * 64.60683 * 11 10 9 14 14 C 1.55165 * 102.94257 * 141.60709 * 13 11 10 15 15 C 1.54903 * 101.57964 * 324.49534 * 14 13 11 16 16 N 1.47031 * 109.87842 * 182.57294 * 11 10 9 17 17 C 1.36943 * 125.64602 * 61.60691 * 16 11 10 18 18 H 1.07999 * 119.99746 * 14.32649 * 17 16 11 19 19 C 1.38813 * 119.99650 * 194.32408 * 17 16 11 20 20 N 1.31620 * 120.00092 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99754 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47267 * 0.02562 * 21 19 17 23 23 H 1.48510 * 109.46761 * 120.00122 * 21 19 17 24 24 H 1.48500 * 109.47302 * 239.99923 * 21 19 17 25 25 C 1.39574 * 119.71726 * 0.26756 * 6 5 4 26 26 C 1.37960 * 119.84670 * 359.50028 * 25 6 5 27 27 H 1.08999 * 109.47336 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47728 * 300.00209 * 1 2 3 29 29 H 1.09009 * 109.46777 * 60.00469 * 1 2 3 30 30 H 1.08997 * 109.47241 * 239.99256 * 2 1 3 31 31 H 1.09002 * 109.46750 * 119.99946 * 2 1 3 32 32 H 1.08001 * 119.93339 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.07663 * 179.97438 * 5 4 3 34 34 H 0.97000 * 120.00538 * 359.72632 * 9 7 6 35 35 H 1.09002 * 109.46842 * 305.13828 * 10 9 7 36 36 H 1.08999 * 109.47274 * 65.13356 * 10 9 7 37 37 H 1.08994 * 110.72402 * 259.96929 * 13 11 10 38 38 H 1.08996 * 110.72336 * 23.06505 * 13 11 10 39 39 H 1.09001 * 111.00183 * 82.57360 * 14 13 11 40 40 H 1.09000 * 111.00503 * 206.42026 * 14 13 11 41 41 H 1.09007 * 110.36580 * 155.84862 * 15 14 13 42 42 H 1.08995 * 110.37179 * 278.05826 * 15 14 13 43 43 H 0.97000 * 120.00007 * 179.97438 * 20 19 17 44 44 H 1.07993 * 120.07989 * 179.72205 * 25 6 5 45 45 H 1.08007 * 119.92837 * 180.20686 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2618 2.0701 1.1999 5 6 2.7212 3.3710 1.2070 6 6 2.9549 4.0317 -0.0001 7 6 3.4478 5.4257 -0.0002 8 8 3.6499 5.9988 1.0525 9 7 3.6672 6.0627 -1.1674 10 6 4.1499 7.4460 -1.1674 11 6 4.1928 7.9711 -2.6039 12 1 4.8136 7.3190 -3.2184 13 6 2.7637 8.0335 -3.1828 14 6 2.7836 9.3416 -4.0172 15 6 3.6987 10.2464 -3.1550 16 7 4.7341 9.3380 -2.6206 17 6 5.9871 9.7053 -2.2079 18 1 6.7460 8.9530 -2.0508 19 6 6.2818 11.0444 -1.9915 20 7 5.3571 11.9611 -2.1835 21 14 7.9908 11.5453 -1.4279 22 1 8.8401 10.3354 -1.2872 23 1 8.5945 12.4595 -2.4306 24 1 7.8966 12.2395 -0.1185 25 6 2.7165 3.3726 -1.2071 26 6 2.2617 2.0702 -1.2000 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 2.0802 1.5579 2.1332 33 1 2.8996 3.8769 2.1443 34 1 3.5057 5.6055 -2.0075 35 1 3.4773 8.0655 -0.5741 36 1 5.1508 7.4817 -0.7374 37 1 2.5682 7.1720 -3.8211 38 1 2.0258 8.0943 -2.3829 39 1 3.2189 9.1704 -5.0017 40 1 1.7832 9.7658 -4.1025 41 1 4.1565 11.0202 -3.7714 42 1 3.1294 10.6974 -2.3423 43 1 5.5629 12.8968 -2.0320 44 1 2.8911 3.8798 -2.1444 45 1 2.0800 1.5577 -2.1333 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028296542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:05 Heat of formation + Delta-G solvation = -1.645623 kcal Electronic energy + Delta-G solvation = -24004.029099 eV Core-core repulsion = 20600.294300 eV Total energy + Delta-G solvation = -3403.734799 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.19306 -38.68666 -37.52901 -34.43893 -34.22367 -32.48909 -31.17720 -30.23487 -29.48357 -28.42409 -25.28014 -24.58654 -23.63736 -22.73363 -21.75432 -20.38777 -20.00732 -19.56388 -17.93050 -16.66446 -16.19580 -15.72775 -15.36002 -15.00939 -14.90626 -14.65470 -14.19348 -13.93018 -13.91981 -13.69333 -13.59691 -13.23109 -13.01935 -12.60569 -12.13502 -12.02516 -11.90060 -11.72074 -11.57541 -11.36918 -11.28779 -11.08618 -10.94365 -10.80484 -10.24842 -10.09656 -9.95692 -9.85173 -9.74962 -9.62322 -9.17772 -8.96248 -8.64452 -8.55924 -6.84897 -5.77270 -3.13762 0.73806 1.19199 2.93355 3.38134 3.43314 3.46925 3.48542 3.81332 4.39409 4.48338 4.50106 4.72812 4.80128 4.92824 4.99665 5.15931 5.19052 5.28740 5.32780 5.39587 5.49741 5.53452 5.59011 5.62102 5.68717 5.79729 5.80649 5.85119 6.04914 6.10246 6.12905 6.23531 6.25907 6.33086 6.45024 6.54312 6.61322 6.68369 6.71537 6.81525 7.05261 7.50707 7.60135 7.78200 7.78836 8.24325 8.46959 9.16428 9.77220 10.44707 11.34925 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.024274 B = 0.002870 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.202898 B = 9753.741162 C =10483.420791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.064 4.064 4 C -0.127 4.127 5 C -0.059 4.059 6 C -0.131 4.131 7 C 0.549 3.451 8 O -0.540 6.540 9 N -0.717 5.717 10 C 0.108 3.892 11 C 0.151 3.849 12 H 0.037 0.963 13 C -0.126 4.126 14 C -0.148 4.148 15 C 0.171 3.829 16 N -0.589 5.589 17 C -0.233 4.233 18 H 0.077 0.923 19 C -0.002 4.002 20 N -0.915 5.915 21 Si 0.911 3.089 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C -0.084 4.084 26 C -0.126 4.126 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.126 0.874 33 H 0.136 0.864 34 H 0.394 0.606 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.026 0.974 43 H 0.253 0.747 44 H 0.127 0.873 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.964 -22.217 0.006 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.064 4.064 4 C -0.145 4.145 5 C -0.078 4.078 6 C -0.134 4.134 7 C 0.335 3.665 8 O -0.418 6.418 9 N -0.368 5.368 10 C -0.016 4.016 11 C 0.043 3.957 12 H 0.055 0.945 13 C -0.164 4.164 14 C -0.187 4.187 15 C 0.047 3.953 16 N -0.313 5.313 17 C -0.361 4.361 18 H 0.094 0.906 19 C -0.199 4.199 20 N -0.561 5.561 21 Si 0.741 3.259 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.216 1.216 25 C -0.103 4.103 26 C -0.144 4.144 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.144 0.856 33 H 0.153 0.847 34 H 0.229 0.771 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.044 0.956 43 H 0.064 0.936 44 H 0.145 0.855 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.672 -21.523 0.784 23.609 hybrid contribution 0.816 0.173 -0.007 0.834 sum -8.856 -21.351 0.778 23.127 Atomic orbital electron populations 1.21753 0.94481 1.01802 1.02445 1.20599 0.96358 0.92480 1.03073 1.20101 0.96950 0.96175 0.93223 1.21010 1.01016 0.94748 0.97759 1.21298 0.94683 0.93865 0.97957 1.20105 1.04215 0.94746 0.94380 1.18301 0.78138 0.85752 0.84290 1.90776 1.52179 1.67639 1.31218 1.46075 1.67162 1.15841 1.07736 1.22281 0.99817 0.78897 1.00646 1.21132 0.93030 0.89546 0.92011 0.94522 1.22605 0.96781 0.97975 0.99077 1.22996 0.99917 0.96807 0.98943 1.21514 0.87992 0.91484 0.94352 1.44570 1.12155 1.00877 1.73701 1.19034 0.86211 0.91979 1.38893 0.90557 1.24917 0.98093 0.96080 1.00829 1.69944 1.32100 1.00254 1.53842 0.86068 0.83403 0.78302 0.78141 1.20361 1.21708 1.21585 1.21330 0.97008 0.94745 0.97177 1.20955 1.01018 0.94712 0.97751 0.92313 0.92428 0.92406 0.90824 0.90849 0.85568 0.84655 0.77130 0.91446 0.91400 0.92461 0.91797 0.92276 0.92317 0.90878 0.95574 0.93640 0.85509 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 37.16 0.37 -0.48 16 2 C -0.09 -0.55 6.06 -27.89 -0.17 -0.71 16 3 C -0.06 -0.56 5.14 -104.53 -0.54 -1.09 16 4 C -0.13 -1.23 9.68 -39.64 -0.38 -1.61 16 5 C -0.06 -0.72 9.60 -39.18 -0.38 -1.10 16 6 C -0.13 -1.73 5.87 -104.96 -0.62 -2.35 16 7 C 0.55 9.19 7.77 -12.33 -0.10 9.09 16 8 O -0.54 -11.27 16.34 5.32 0.09 -11.19 16 9 N -0.72 -11.21 5.28 -61.25 -0.32 -11.53 16 10 C 0.11 2.13 5.07 -4.04 -0.02 2.11 16 11 C 0.15 2.99 3.21 -66.95 -0.21 2.78 16 12 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 13 C -0.13 -2.10 6.10 -24.90 -0.15 -2.25 16 14 C -0.15 -2.70 7.09 -24.58 -0.17 -2.87 16 15 C 0.17 4.08 5.44 -2.36 -0.01 4.07 16 16 N -0.59 -14.64 3.14 -162.32 -0.51 -15.14 16 17 C -0.23 -6.40 9.76 -15.06 -0.15 -6.55 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C 0.00 -0.06 5.47 -17.43 -0.10 -0.15 16 20 N -0.92 -26.74 10.58 55.49 0.59 -26.15 16 21 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 C -0.08 -0.87 9.54 -39.19 -0.37 -1.24 16 26 C -0.13 -1.12 9.68 -39.64 -0.38 -1.50 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 30 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.14 1.71 7.65 -52.49 -0.40 1.30 16 34 H 0.39 4.87 6.37 -40.82 -0.26 4.61 16 35 H 0.07 1.48 8.08 -51.93 -0.42 1.06 16 36 H 0.07 1.51 7.91 -51.93 -0.41 1.10 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.07 7.81 -51.93 -0.41 0.66 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 1.94 6.91 -51.92 -0.36 1.58 16 42 H 0.03 0.68 8.08 -51.93 -0.42 0.26 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.13 1.07 6.41 -52.49 -0.34 0.73 16 45 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -32.39 366.22 -10.25 -42.64 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.20 Total: 2.50 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -3.38 Total: -3.86 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.25 Total: -52.83 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.39 -10.25 -42.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028296542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.997 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds