Wall clock time and date at job start Tue Mar 31 2020 08:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47250 * 2 1 4 4 C 1.52996 * 109.47337 * 179.97438 * 3 2 1 5 5 C 1.50694 * 109.47079 * 180.02562 * 4 3 2 6 6 C 1.38361 * 119.85254 * 90.00942 * 5 4 3 7 7 C 1.37958 * 120.14438 * 180.02562 * 6 5 4 8 8 C 1.39573 * 119.85565 * 0.02562 * 7 6 5 9 9 C 1.47847 * 120.14677 * 179.97438 * 8 7 6 10 10 O 1.21552 * 119.99672 * 359.97438 * 9 8 7 11 11 N 1.34783 * 120.00055 * 180.02562 * 9 8 7 12 12 C 1.46494 * 119.99677 * 179.97438 * 11 9 8 13 13 C 1.53498 * 114.20393 * 155.00067 * 12 11 9 14 14 N 1.47065 * 87.98675 * 87.71349 * 13 12 11 15 15 C 1.36935 * 136.05778 * 207.07950 * 14 13 12 16 16 H 1.07997 * 119.99961 * 6.77313 * 15 14 13 17 17 C 1.38812 * 119.99962 * 186.76980 * 15 14 13 18 18 N 1.31618 * 119.99992 * 172.26235 * 17 15 14 19 19 Si 1.86794 * 120.00181 * 352.26315 * 17 15 14 20 20 H 1.48495 * 109.47373 * 175.35665 * 19 17 15 21 21 H 1.48501 * 109.47224 * 295.36298 * 19 17 15 22 22 H 1.48505 * 109.47188 * 55.35894 * 19 17 15 23 23 C 1.47070 * 87.88470 * 27.34556 * 14 13 12 24 24 C 1.39580 * 119.71271 * 0.25776 * 8 7 6 25 25 C 1.37961 * 119.84814 * 359.46918 * 24 8 7 26 26 H 1.09006 * 109.47001 * 59.99732 * 1 2 3 27 27 H 1.09005 * 109.46673 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47048 * 299.99893 * 1 2 3 29 29 H 1.09001 * 109.47396 * 240.00070 * 2 1 3 30 30 H 1.08997 * 109.46957 * 120.00493 * 2 1 3 31 31 H 1.09007 * 109.46790 * 60.00186 * 3 2 1 32 32 H 1.08997 * 109.47543 * 300.00134 * 3 2 1 33 33 H 1.09007 * 109.46605 * 60.00592 * 4 3 2 34 34 H 1.08997 * 109.47337 * 300.00779 * 4 3 2 35 35 H 1.07996 * 119.92678 * 0.02562 * 6 5 4 36 36 H 1.08006 * 120.07438 * 179.97438 * 7 6 5 37 37 H 0.97001 * 119.99850 * 359.97438 * 11 9 8 38 38 H 1.08994 * 113.28499 * 21.93089 * 12 11 9 39 39 H 1.09003 * 113.46903 * 332.93254 * 13 12 11 40 40 H 1.09002 * 113.51847 * 202.50737 * 13 12 11 41 41 H 0.97005 * 119.99783 * 4.88000 * 18 17 15 42 42 H 1.08996 * 113.47141 * 87.43428 * 23 14 13 43 43 H 1.09002 * 113.46180 * 217.88172 * 23 14 13 44 44 H 1.07998 * 120.07566 * 179.72533 * 24 8 7 45 45 H 1.08000 * 119.92808 * 180.28085 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0013 6 6 4.3015 3.5122 1.2016 7 6 4.7608 4.8130 1.2092 8 6 4.9938 5.4747 0.0026 9 6 5.4855 6.8690 0.0032 10 8 5.6873 7.4417 1.0562 11 7 5.7090 7.5054 -1.1638 12 6 6.1956 8.8871 -1.1630 13 6 6.9623 9.2849 -2.4319 14 7 5.6727 9.6603 -3.0309 15 6 5.1593 9.7372 -4.2980 16 1 5.7352 9.3753 -5.1369 17 6 3.8986 10.2802 -4.5043 18 7 3.4668 10.4948 -5.7290 19 14 2.8148 10.7064 -3.0438 20 1 1.5761 11.3701 -3.5235 21 1 2.4593 9.4642 -2.3119 22 1 3.5476 11.6239 -2.1346 23 6 5.1793 9.9233 -1.6707 24 6 4.7549 4.8164 -1.2048 25 6 4.3010 3.5136 -1.1984 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6768 1.9564 -0.8899 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9287 0.8907 35 1 4.1205 2.9992 2.1345 36 1 4.9390 5.3186 2.1468 37 1 5.5475 7.0484 -2.0040 38 1 6.6918 9.1687 -0.2343 39 1 7.4438 8.4433 -2.9300 40 1 7.6357 10.1296 -2.2864 41 1 3.9989 10.2089 -6.4879 42 1 5.3823 10.9364 -1.3235 43 1 4.1417 9.6254 -1.5203 44 1 4.9289 5.3243 -2.1419 45 1 4.1200 3.0015 -2.1319 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030639821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:41 Heat of formation + Delta-G solvation = 31.234187 kcal Electronic energy + Delta-G solvation = -23780.679812 eV Core-core repulsion = 20378.370789 eV Total energy + Delta-G solvation = -3402.309023 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.28764 -39.09904 -37.80772 -35.95315 -33.63191 -32.62004 -32.05739 -30.99541 -29.06571 -27.74426 -25.40070 -25.02327 -23.06913 -22.66314 -21.91612 -21.32430 -20.27188 -19.53862 -17.87534 -17.51002 -16.33181 -15.82567 -15.60683 -15.25397 -14.98729 -14.74776 -14.44295 -14.34036 -13.88425 -13.78116 -13.63520 -13.29132 -13.16557 -13.03008 -12.85299 -12.63424 -12.07520 -11.88669 -11.65614 -11.47843 -11.37031 -11.17589 -11.03592 -10.99989 -10.84198 -10.57235 -10.32779 -9.79057 -9.51627 -9.23461 -9.10113 -8.89895 -8.88015 -8.49730 -7.20030 -6.36004 -3.27465 0.77811 1.26865 2.90965 3.34543 3.42564 3.44285 3.64145 3.82085 4.36581 4.52567 4.56534 4.69185 4.70337 4.72565 4.78970 4.86183 4.95469 5.02640 5.12513 5.24416 5.33143 5.34881 5.36145 5.39143 5.48355 5.57319 5.64972 5.74525 5.82391 5.83451 5.86858 5.92070 5.93508 6.02926 6.16079 6.19811 6.22689 6.29296 6.30981 6.40712 6.41169 6.76606 6.96569 7.05350 7.79813 8.19202 8.41505 8.93239 9.46013 10.31805 11.16615 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.003273 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.892087 B = 8554.066637 C = 9624.200132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.116 4.116 4 C -0.083 4.083 5 C -0.061 4.061 6 C -0.129 4.129 7 C -0.058 4.058 8 C -0.134 4.134 9 C 0.557 3.443 10 O -0.547 6.547 11 N -0.690 5.690 12 C 0.098 3.902 13 C 0.114 3.886 14 N -0.629 5.629 15 C -0.308 4.308 16 H 0.083 0.917 17 C -0.022 4.022 18 N -0.933 5.933 19 Si 1.070 2.930 20 H -0.295 1.295 21 H -0.294 1.294 22 H -0.287 1.287 23 C 0.084 3.916 24 C -0.080 4.080 25 C -0.125 4.125 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.406 0.594 38 H 0.105 0.895 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.261 0.739 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.130 0.870 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.404 -20.512 13.212 24.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.154 4.154 4 C -0.120 4.120 5 C -0.061 4.061 6 C -0.147 4.147 7 C -0.077 4.077 8 C -0.137 4.137 9 C 0.345 3.655 10 O -0.426 6.426 11 N -0.340 5.340 12 C -0.009 4.009 13 C -0.013 4.013 14 N -0.358 5.358 15 C -0.434 4.434 16 H 0.101 0.899 17 C -0.221 4.221 18 N -0.575 5.575 19 Si 0.903 3.097 20 H -0.223 1.223 21 H -0.223 1.223 22 H -0.213 1.213 23 C -0.042 4.042 24 C -0.099 4.099 25 C -0.143 4.143 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.144 0.856 36 H 0.153 0.847 37 H 0.242 0.758 38 H 0.123 0.877 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.147 0.853 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.996 -19.388 14.090 23.988 hybrid contribution 1.399 -0.685 -1.041 1.874 sum 0.403 -20.073 13.048 23.945 Atomic orbital electron populations 1.21783 0.95818 1.01547 1.02025 1.21542 0.95975 0.96701 1.01976 1.21625 0.94059 0.96889 1.02807 1.20678 0.95874 0.92399 1.03086 1.20091 0.96724 0.96128 0.93174 1.20987 1.01241 0.94753 0.97716 1.21247 0.94826 0.93861 0.97725 1.19991 1.04875 0.94392 0.94475 1.18271 0.77491 0.85831 0.83906 1.90730 1.52736 1.67938 1.31162 1.45433 1.66121 1.13959 1.08480 1.22490 0.97404 0.81584 0.99379 1.22711 0.90686 0.97681 0.90236 1.46126 1.08582 1.79776 1.01295 1.20103 1.01542 1.40339 0.81384 0.89942 1.25706 0.96220 0.97762 1.02456 1.70931 1.42669 1.46406 0.97480 0.83688 0.75976 0.76141 0.73901 1.22275 1.22256 1.21346 1.23278 0.97997 0.96603 0.86324 1.21419 0.96321 0.94732 0.97378 1.20984 1.00762 0.94680 0.97858 0.92619 0.92829 0.92713 0.91984 0.92059 0.91687 0.91556 0.90774 0.90850 0.85577 0.84692 0.75786 0.87728 0.93272 0.92961 0.92909 0.92628 0.92793 0.85259 0.85466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.12 -0.77 5.93 -26.73 -0.16 -0.92 16 3 C -0.12 -0.84 5.20 -26.73 -0.14 -0.97 16 4 C -0.08 -0.60 5.34 -27.89 -0.15 -0.75 16 5 C -0.06 -0.59 5.14 -104.53 -0.54 -1.13 16 6 C -0.13 -1.32 9.68 -39.64 -0.38 -1.70 16 7 C -0.06 -0.72 9.60 -39.19 -0.38 -1.10 16 8 C -0.13 -1.91 5.87 -104.97 -0.62 -2.52 16 9 C 0.56 9.46 7.77 -12.33 -0.10 9.36 16 10 O -0.55 -10.63 15.94 5.32 0.08 -10.54 16 11 N -0.69 -11.79 5.35 -54.43 -0.29 -12.08 16 12 C 0.10 1.78 4.61 -67.67 -0.31 1.47 16 13 C 0.11 2.16 8.44 -8.51 -0.07 2.09 16 14 N -0.63 -15.07 3.70 -184.60 -0.68 -15.75 16 15 C -0.31 -8.67 11.08 -15.06 -0.17 -8.84 16 16 H 0.08 2.43 8.05 -52.49 -0.42 2.01 16 17 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 18 N -0.93 -29.26 13.70 55.49 0.76 -28.50 16 19 Si 1.07 27.24 25.13 -169.99 -4.27 22.97 16 20 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 21 H -0.29 -7.21 6.65 56.52 0.38 -6.84 16 22 H -0.29 -6.87 6.13 56.52 0.35 -6.52 16 23 C 0.08 1.82 5.54 -8.36 -0.05 1.78 16 24 C -0.08 -1.00 9.54 -39.18 -0.37 -1.37 16 25 C -0.12 -1.32 9.68 -39.64 -0.38 -1.71 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.49 8.08 -51.92 -0.42 0.07 16 34 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.14 1.67 7.65 -52.48 -0.40 1.27 16 37 H 0.41 6.59 6.80 -40.82 -0.28 6.32 16 38 H 0.10 1.79 7.45 -51.93 -0.39 1.40 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.26 8.05 8.73 -40.82 -0.36 7.69 16 42 H 0.06 1.17 7.73 -51.93 -0.40 0.76 16 43 H 0.05 1.24 4.65 -51.93 -0.24 1.00 16 44 H 0.13 1.54 6.41 -52.49 -0.34 1.20 16 45 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 365.57 15.07 5.51 5.51 Total: -1.00 -33.28 365.57 -9.62 -42.90 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.19 Total: 3.15 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -3.54 Total: -7.66 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.21 Total: -56.33 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 27.24 SS G_CDS: -4.27 Total: 22.97 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.28 -9.62 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030639821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.137 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds