Wall clock time and date at job start Tue Mar 31 2020 07:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38239 * 119.99901 * 179.76875 * 4 3 2 6 6 C 1.38238 * 119.99492 * 0.48004 * 5 4 3 7 7 C 1.50706 * 119.99437 * 179.77082 * 6 5 4 8 8 H 1.08998 * 109.46672 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47319 * 60.02410 * 7 6 5 10 10 C 1.50697 * 109.47287 * 300.02455 * 7 6 5 11 11 O 1.21280 * 119.99736 * 0.02562 * 10 7 6 12 12 N 1.34777 * 120.00159 * 180.02562 * 10 7 6 13 13 C 1.46498 * 120.00046 * 179.97438 * 12 10 7 14 14 C 1.53952 * 113.74225 * 253.74278 * 13 12 10 15 15 N 1.47812 * 86.03521 * 222.08735 * 14 13 12 16 16 C 1.36939 * 134.45640 * 204.64665 * 15 14 13 17 17 H 1.07995 * 120.00390 * 179.86297 * 16 15 14 18 18 C 1.38810 * 119.99641 * 359.86337 * 16 15 14 19 19 N 1.31617 * 120.00331 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99782 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47342 * 59.99615 * 20 18 16 22 22 H 1.48501 * 109.47129 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46999 * 299.99469 * 20 18 16 24 24 C 1.47585 * 91.05448 * 24.54686 * 15 14 13 25 25 C 1.38225 * 120.00505 * 359.79428 * 6 5 4 26 26 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 32 32 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 33 33 H 1.07993 * 120.00120 * 180.25541 * 5 4 3 34 34 H 1.09000 * 109.47297 * 300.00176 * 9 7 6 35 35 H 1.09008 * 109.46793 * 59.99600 * 9 7 6 36 36 H 1.08997 * 109.47352 * 179.97438 * 9 7 6 37 37 H 0.97001 * 119.99699 * 0.02562 * 12 10 7 38 38 H 1.09001 * 112.94446 * 25.32951 * 13 12 10 39 39 H 1.09008 * 113.76526 * 336.34801 * 14 13 12 40 40 H 1.09001 * 113.77043 * 107.74447 * 14 13 12 41 41 H 0.97003 * 120.00199 * 180.02562 * 19 18 16 42 42 H 1.08997 * 113.77091 * 221.15556 * 24 15 14 43 43 H 1.08999 * 113.76498 * 89.75443 * 24 15 14 44 44 H 1.07998 * 120.00220 * 179.97438 * 25 6 5 45 45 H 1.07998 * 120.00407 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7242 3.3755 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4563 5.4482 -0.0001 8 1 3.5775 5.7907 1.0276 9 6 2.4485 6.3454 -0.7213 10 6 4.7838 5.5118 -0.7106 11 8 5.2736 4.5027 -1.1719 12 7 5.4267 6.6899 -0.8333 13 6 6.7175 6.7516 -1.5235 14 6 7.9176 6.9406 -0.5779 15 7 8.4257 7.9001 -1.5809 16 6 9.6676 8.3696 -1.9161 17 1 9.7757 9.0890 -2.7142 18 6 10.7877 7.9208 -1.2299 19 7 10.6560 7.0436 -0.2575 20 14 12.4818 8.5617 -1.6865 21 1 12.5183 10.0354 -1.5079 22 1 13.5021 7.9320 -0.8103 23 1 12.7719 8.2276 -3.1040 24 6 7.0580 8.1469 -2.0776 25 6 2.7238 3.3757 1.1971 26 6 2.2627 2.0725 1.1971 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.0926 1.5598 -2.1325 33 1 2.9044 3.8845 -2.1325 34 1 2.3273 6.0028 -1.7489 35 1 1.4883 6.2993 -0.2074 36 1 2.8115 7.3731 -0.7209 37 1 5.0352 7.4969 -0.4640 38 1 6.8513 5.9474 -2.2470 39 1 7.6572 7.3990 0.3761 40 1 8.5354 6.0492 -0.4685 41 1 11.4387 6.7302 0.2223 42 1 6.9908 8.2169 -3.1633 43 1 6.5447 8.9605 -1.5650 44 1 2.9038 3.8848 2.1324 45 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031111669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:07 Heat of formation + Delta-G solvation = 7.117736 kcal Electronic energy + Delta-G solvation = -23922.076940 eV Core-core repulsion = 20518.722150 eV Total energy + Delta-G solvation = -3403.354791 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.40393 -40.20242 -39.09529 -35.96495 -35.17124 -33.97077 -33.08912 -31.77413 -29.66699 -29.11367 -26.63583 -26.04480 -25.11064 -23.76576 -23.60237 -21.84883 -21.36259 -20.71568 -18.79259 -17.98560 -17.64214 -17.01411 -16.93765 -16.41173 -15.98249 -15.78946 -15.66746 -15.05237 -14.75941 -14.59998 -14.50573 -14.29250 -13.96060 -13.71351 -13.42293 -13.29585 -13.22871 -13.19686 -12.92222 -12.78352 -12.62819 -12.49026 -12.30521 -12.25050 -11.99860 -11.95590 -11.62029 -11.59629 -11.53246 -10.89656 -10.70434 -9.93063 -9.72862 -9.37564 -8.99108 -7.93357 -5.29047 0.44333 0.58139 1.44132 1.48585 1.54676 1.69811 2.19670 2.49392 2.92908 3.24604 3.38824 3.61132 3.80157 3.85616 3.95882 4.02678 4.16386 4.22934 4.29366 4.35945 4.45782 4.52039 4.54561 4.61519 4.72666 4.73669 4.75336 4.89182 4.89607 4.96634 5.08523 5.10642 5.16235 5.20549 5.23189 5.26365 5.31316 5.40595 5.46213 5.56777 5.71558 5.75389 5.77470 5.87933 6.17633 6.66466 6.86266 7.35568 7.56606 8.49631 9.23286 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.028521 B = 0.002598 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.483670 B =10774.839531 C =11238.654472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.091 4.091 4 C -0.135 4.135 5 C -0.098 4.098 6 C -0.085 4.085 7 C -0.063 4.063 8 H 0.126 0.874 9 C -0.135 4.135 10 C 0.512 3.488 11 O -0.581 6.581 12 N -0.702 5.702 13 C 0.121 3.879 14 C 0.152 3.848 15 N -0.640 5.640 16 C -0.236 4.236 17 H 0.091 0.909 18 C -0.072 4.072 19 N -0.957 5.957 20 Si 0.984 3.016 21 H -0.272 1.272 22 H -0.296 1.296 23 H -0.275 1.275 24 C 0.123 3.877 25 C -0.118 4.118 26 C -0.129 4.129 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.127 0.873 33 H 0.108 0.892 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.415 0.585 38 H 0.087 0.913 39 H 0.027 0.973 40 H 0.029 0.971 41 H 0.248 0.752 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.139 0.861 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.843 -6.718 2.497 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.153 4.153 5 C -0.116 4.116 6 C -0.086 4.086 7 C -0.084 4.084 8 H 0.144 0.856 9 C -0.192 4.192 10 C 0.300 3.700 11 O -0.460 6.460 12 N -0.354 5.354 13 C 0.015 3.985 14 C 0.025 3.975 15 N -0.368 5.368 16 C -0.364 4.364 17 H 0.109 0.891 18 C -0.264 4.264 19 N -0.605 5.605 20 Si 0.812 3.188 21 H -0.198 1.198 22 H -0.222 1.222 23 H -0.201 1.201 24 C -0.002 4.002 25 C -0.136 4.136 26 C -0.147 4.147 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.145 0.855 33 H 0.126 0.874 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.253 0.747 38 H 0.105 0.895 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.157 0.843 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.167 -7.383 2.166 25.362 hybrid contribution 1.413 0.551 0.063 1.517 sum -22.755 -6.832 2.229 23.863 Atomic orbital electron populations 1.21710 0.93774 1.02395 1.01992 1.20586 0.96903 0.91407 1.03301 1.20175 0.98720 0.97178 0.92994 1.21174 1.00882 0.94779 0.98429 1.20962 0.97759 0.95289 0.97625 1.19504 1.00036 0.95219 0.93822 1.20348 0.91222 0.94503 1.02366 0.85608 1.21797 0.98446 0.98805 1.00138 1.21207 0.87041 0.82708 0.79065 1.90708 1.69181 1.35919 1.50204 1.45864 1.20921 1.10744 1.57823 1.23094 0.81913 0.98429 0.95088 1.22592 0.90677 0.92374 0.91823 1.46069 1.01317 1.50262 1.39127 1.19404 0.82587 1.20152 1.14243 0.89133 1.25754 1.01972 1.00180 0.98539 1.70041 1.29294 1.35387 1.25790 0.85069 0.78492 0.77907 0.77366 1.19802 1.22239 1.20088 1.23010 0.84202 0.94089 0.98879 1.21284 0.99352 0.95354 0.97628 1.21234 1.00374 0.94804 0.98271 0.91143 0.92530 0.93008 0.90294 0.90963 0.85489 0.87385 0.92804 0.89604 0.89815 0.74725 0.89500 0.95534 0.95263 0.94279 0.91835 0.91375 0.84279 0.84255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.89 71.98 0.71 -1.04 16 2 C -0.08 -1.29 6.07 29.85 0.18 -1.11 16 3 C -0.09 -1.89 5.13 -19.87 -0.10 -1.99 16 4 C -0.13 -3.17 9.70 22.27 0.22 -2.95 16 5 C -0.10 -2.57 7.93 22.27 0.18 -2.39 16 6 C -0.09 -2.08 4.40 -19.87 -0.09 -2.16 16 7 C -0.06 -1.34 2.90 -12.29 -0.04 -1.38 16 8 H 0.13 2.09 7.88 -2.39 -0.02 2.07 16 9 C -0.13 -2.03 8.90 71.98 0.64 -1.39 16 10 C 0.51 15.73 7.02 87.66 0.62 16.35 16 11 O -0.58 -23.82 14.73 -3.03 -0.04 -23.86 16 12 N -0.70 -20.45 5.26 -447.37 -2.36 -22.80 16 13 C 0.12 4.75 4.40 46.75 0.21 4.95 16 14 C 0.15 7.58 7.33 86.44 0.63 8.21 16 15 N -0.64 -33.34 3.70 -716.64 -2.65 -35.99 16 16 C -0.24 -13.39 10.70 84.03 0.90 -12.49 16 17 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 18 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 19 N -0.96 -59.89 11.39 21.65 0.25 -59.65 16 20 Si 0.98 46.45 29.55 68.60 2.03 48.48 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 24 C 0.12 4.72 8.69 86.49 0.75 5.48 16 25 C -0.12 -2.55 9.67 22.27 0.22 -2.34 16 26 C -0.13 -2.61 9.70 22.27 0.22 -2.39 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 31 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 32 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.11 2.93 7.52 -2.91 -0.02 2.91 16 34 H 0.05 0.92 7.39 -2.39 -0.02 0.91 16 35 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.08 0.96 7.57 -2.39 -0.02 0.94 16 37 H 0.42 8.89 8.13 -92.71 -0.75 8.14 16 38 H 0.09 3.85 7.51 -2.39 -0.02 3.83 16 39 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.03 1.71 7.16 -2.39 -0.02 1.69 16 41 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.07 2.22 8.11 -2.39 -0.02 2.20 16 44 H 0.14 2.35 7.95 -2.91 -0.02 2.32 16 45 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -76.55 370.39 3.14 -73.40 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.22 Total: 20.79 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 5.71 Total: -0.36 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -4.76 Total: -118.44 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.04 Total: -23.86 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -76.55 3.14 -73.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031111669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.521 kcal (2) G-P(sol) polarization free energy of solvation -76.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds