Wall clock time and date at job start Tue Mar 31 2020 07:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47250 * 2 1 4 4 C 1.38258 * 119.99877 * 265.02668 * 3 2 1 5 5 C 1.38214 * 119.99342 * 179.97438 * 4 3 2 6 6 C 1.38253 * 120.00573 * 359.97388 * 5 4 3 7 7 C 1.38217 * 119.99818 * 359.75053 * 6 5 4 8 8 C 1.38209 * 119.99603 * 84.99918 * 3 2 1 9 9 C 1.50699 * 120.00517 * 0.02562 * 8 3 2 10 10 H 1.09002 * 115.55636 * 334.29166 * 9 8 3 11 11 C 1.53000 * 117.50321 * 188.60766 * 9 8 3 12 12 C 1.52997 * 117.50247 * 119.97866 * 9 8 3 13 13 H 1.08999 * 117.49685 * 0.02562 * 12 9 8 14 14 C 1.50697 * 117.49950 * 214.97927 * 12 9 8 15 15 O 1.21275 * 120.00130 * 359.97438 * 14 12 9 16 16 N 1.34783 * 119.99687 * 179.97438 * 14 12 9 17 17 C 1.46501 * 119.99603 * 180.02562 * 16 14 12 18 18 C 1.53008 * 109.46688 * 180.02562 * 17 16 14 19 19 N 1.46501 * 109.46688 * 180.02562 * 18 17 16 20 20 C 1.36944 * 119.99689 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99966 * 0.02562 * 20 19 18 22 22 C 1.38810 * 119.99928 * 180.02562 * 20 19 18 23 23 N 1.31611 * 119.99999 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99807 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.46948 * 90.00297 * 24 22 20 26 26 H 1.48507 * 109.46876 * 209.99922 * 24 22 20 27 27 H 1.48494 * 109.47209 * 329.99839 * 24 22 20 28 28 H 1.08997 * 109.47707 * 59.99911 * 1 2 3 29 29 H 1.09007 * 109.46934 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47212 * 299.99283 * 1 2 3 31 31 H 1.09007 * 109.47506 * 240.00438 * 2 1 3 32 32 H 1.08997 * 109.47707 * 120.00089 * 2 1 3 33 33 H 1.07996 * 120.00255 * 359.97438 * 4 3 2 34 34 H 1.08001 * 119.99818 * 179.97438 * 5 4 3 35 35 H 1.08002 * 120.00067 * 179.97438 * 6 5 4 36 36 H 1.07993 * 119.99977 * 180.26740 * 7 6 5 37 37 H 1.08990 * 117.49990 * 145.01584 * 11 9 8 38 38 H 1.09004 * 117.49237 * 359.97438 * 11 9 8 39 39 H 0.96994 * 120.00039 * 0.02562 * 16 14 12 40 40 H 1.08997 * 109.47283 * 299.99636 * 17 16 14 41 41 H 1.09004 * 109.47080 * 60.00559 * 17 16 14 42 42 H 1.08997 * 109.46811 * 299.99740 * 18 17 16 43 43 H 1.08997 * 109.47441 * 60.00285 * 18 17 16 44 44 H 0.96994 * 120.00358 * 0.02562 * 19 18 17 45 45 H 0.97003 * 120.00081 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3606 2.0380 -1.1929 5 6 2.8209 3.3412 -1.1928 6 6 2.9524 4.0279 -0.0001 7 6 2.6188 3.4129 1.1919 8 6 2.1643 2.1071 1.1924 9 6 1.8064 1.4344 2.4926 10 1 1.0748 0.6297 2.4199 11 6 1.7798 2.3016 3.7528 12 6 2.9106 1.2927 3.5421 13 1 3.8959 1.6864 3.2923 14 6 2.9035 0.0512 4.3963 15 8 2.0433 -0.7888 4.2380 16 7 3.8532 -0.1255 5.3362 17 6 3.8466 -1.3326 6.1662 18 6 5.0215 -1.2847 7.1453 19 7 5.0152 -2.4922 7.9749 20 6 5.9803 -2.6718 8.9298 21 1 6.7456 -1.9231 9.0716 22 6 5.9747 -3.8161 9.7155 23 7 6.9019 -3.9884 10.6336 24 14 4.6512 -5.1113 9.4698 25 1 5.1104 -6.1037 8.4651 26 1 4.3860 -5.7987 10.7592 27 1 3.4054 -4.4612 8.9901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.2575 1.5017 -2.1246 34 1 3.0777 3.8232 -2.1245 35 1 3.3124 5.0462 -0.0001 36 1 2.7175 3.9507 2.1232 37 1 1.0308 2.0674 4.5092 38 1 2.0216 3.3587 3.6415 39 1 4.5410 0.5466 5.4630 40 1 2.9115 -1.3852 6.7237 41 1 3.9399 -2.2122 5.5291 42 1 5.9568 -1.2320 6.5881 43 1 4.9279 -0.4053 7.7824 44 1 4.3281 -3.1647 7.8474 45 1 6.8982 -4.7883 11.1824 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132985222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:17 Heat of formation + Delta-G solvation = -6.333468 kcal Electronic energy + Delta-G solvation = -23355.715484 eV Core-core repulsion = 19951.777405 eV Total energy + Delta-G solvation = -3403.938079 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.42996 -40.32070 -37.80222 -37.06715 -35.52998 -35.08821 -33.47403 -31.54544 -30.26500 -29.95862 -26.24052 -25.02118 -24.69777 -24.24577 -23.07706 -21.97829 -21.34879 -20.83524 -19.83010 -18.53834 -17.46959 -17.17689 -16.67792 -16.57788 -16.28184 -15.94871 -15.65243 -15.42917 -15.16559 -14.82984 -14.73802 -14.62764 -14.39343 -14.07623 -13.61128 -13.46869 -13.23187 -13.13304 -12.76905 -12.72407 -12.67150 -12.62938 -12.29337 -12.10134 -11.85665 -11.83968 -11.77466 -11.48059 -11.36083 -11.05227 -11.00010 -10.18055 -9.65482 -9.38437 -9.38102 -8.06488 -5.42026 0.38839 0.51521 1.38040 1.39830 1.44837 1.47055 2.02082 2.45472 2.67586 3.08618 3.25145 3.48703 3.66983 3.75763 3.85192 3.90497 3.91744 3.99752 4.13250 4.15123 4.18946 4.28367 4.33396 4.47731 4.52182 4.63436 4.64810 4.69735 4.76493 4.94747 4.96531 4.99516 5.07236 5.07931 5.12790 5.18131 5.26156 5.34721 5.35987 5.64143 5.66335 5.71048 5.79827 6.14962 6.16415 6.50354 7.01675 7.18450 7.76115 7.93786 9.14214 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.026115 B = 0.002341 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.908094 B =11959.861310 C =12477.211840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.086 4.086 4 C -0.127 4.127 5 C -0.126 4.126 6 C -0.128 4.128 7 C -0.121 4.121 8 C -0.064 4.064 9 C -0.090 4.090 10 H 0.108 0.892 11 C -0.127 4.127 12 C -0.177 4.177 13 H 0.148 0.852 14 C 0.538 3.462 15 O -0.584 6.584 16 N -0.708 5.708 17 C 0.123 3.877 18 C 0.151 3.849 19 N -0.759 5.759 20 C -0.238 4.238 21 H 0.064 0.936 22 C -0.060 4.060 23 N -0.979 5.979 24 Si 0.953 3.047 25 H -0.278 1.278 26 H -0.293 1.293 27 H -0.254 1.254 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.099 0.901 38 H 0.137 0.863 39 H 0.418 0.582 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.041 0.959 43 H 0.042 0.958 44 H 0.366 0.634 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.129 19.273 -26.548 34.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 C -0.086 4.086 4 C -0.145 4.145 5 C -0.144 4.144 6 C -0.146 4.146 7 C -0.139 4.139 8 C -0.064 4.064 9 C -0.108 4.108 10 H 0.126 0.874 11 C -0.164 4.164 12 C -0.197 4.197 13 H 0.165 0.835 14 C 0.326 3.674 15 O -0.465 6.465 16 N -0.360 5.360 17 C -0.002 4.002 18 C 0.024 3.976 19 N -0.406 5.406 20 C -0.369 4.369 21 H 0.082 0.918 22 C -0.252 4.252 23 N -0.629 5.629 24 Si 0.780 3.220 25 H -0.204 1.204 26 H -0.219 1.219 27 H -0.179 1.179 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.151 0.849 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.117 0.883 38 H 0.155 0.845 39 H 0.255 0.745 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.199 0.801 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.536 18.733 -26.520 34.805 hybrid contribution -0.041 -1.066 0.519 1.187 sum -12.577 17.667 -26.001 33.858 Atomic orbital electron populations 1.21707 0.94230 1.02046 1.01978 1.20558 0.96711 0.92713 1.02627 1.19880 0.99261 0.96356 0.93073 1.21250 0.99899 0.95808 0.97523 1.21455 0.99143 0.94555 0.99200 1.21426 0.99969 1.00965 0.92209 1.21295 0.99082 0.93936 0.99576 1.19021 1.00626 0.94458 0.92309 1.21023 0.99834 1.01885 0.88097 0.87418 1.23268 0.97644 0.97426 0.98098 1.22317 0.98590 0.96729 1.02107 0.83482 1.20190 0.80237 0.87282 0.79726 1.90682 1.39047 1.46418 1.70306 1.45665 1.31218 1.23032 1.36055 1.21232 0.98638 0.87830 0.92529 1.20829 0.95882 0.89349 0.91533 1.42561 1.33298 1.22457 1.42256 1.19006 1.04706 1.03644 1.09529 0.91820 1.25495 1.00874 1.00697 0.98173 1.69864 1.37574 1.29566 1.25911 0.85449 0.80074 0.79482 0.77043 1.20371 1.21936 1.17894 0.91865 0.92071 0.93257 0.90320 0.92329 0.84901 0.84165 0.83909 0.84005 0.88285 0.84527 0.74495 0.92193 0.92241 0.94083 0.94017 0.80056 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.74 71.98 0.70 -1.59 16 2 C -0.09 -1.56 5.38 29.85 0.16 -1.40 16 3 C -0.09 -1.50 5.13 -19.87 -0.10 -1.60 16 4 C -0.13 -1.86 9.68 22.27 0.22 -1.65 16 5 C -0.13 -1.56 10.05 22.27 0.22 -1.34 16 6 C -0.13 -1.53 10.05 22.27 0.22 -1.30 16 7 C -0.12 -1.62 9.30 22.27 0.21 -1.42 16 8 C -0.06 -1.09 5.61 -19.87 -0.11 -1.21 16 9 C -0.09 -1.67 4.66 -11.54 -0.05 -1.72 16 10 H 0.11 2.49 5.47 -2.39 -0.01 2.48 16 11 C -0.13 -1.83 9.56 30.60 0.29 -1.54 16 12 C -0.18 -3.16 5.83 -11.54 -0.07 -3.23 16 13 H 0.15 1.98 8.14 -2.39 -0.02 1.96 16 14 C 0.54 14.01 7.61 87.66 0.67 14.68 16 15 O -0.58 -20.23 16.26 -3.01 -0.05 -20.28 16 16 N -0.71 -17.18 5.56 -463.04 -2.57 -19.76 16 17 C 0.12 3.80 5.79 86.38 0.50 4.30 16 18 C 0.15 5.39 6.37 86.38 0.55 5.94 16 19 N -0.76 -35.40 5.41 -343.44 -1.86 -37.25 16 20 C -0.24 -13.51 10.47 84.03 0.88 -12.63 16 21 H 0.06 3.89 8.06 -2.91 -0.02 3.87 16 22 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 23 N -0.98 -62.50 13.97 21.65 0.30 -62.20 16 24 Si 0.95 45.79 27.74 68.60 1.90 47.70 16 25 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 26 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 27 H -0.25 -11.18 6.52 99.48 0.65 -10.54 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.05 0.87 7.17 -2.39 -0.02 0.85 16 31 H 0.08 1.19 8.05 -2.38 -0.02 1.17 16 32 H 0.06 1.27 6.94 -2.39 -0.02 1.25 16 33 H 0.13 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 35 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 36 H 0.14 1.27 6.02 -2.91 -0.02 1.25 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.14 1.18 6.17 -2.38 -0.01 1.16 16 39 H 0.42 7.50 8.47 -92.71 -0.79 6.71 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.37 16.57 5.53 -92.71 -0.51 16.05 16 45 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -73.65 369.90 2.13 -71.52 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -0.35 Total: 29.09 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 4.75 Total: -8.81 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -4.13 Total: -119.21 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.05 Total: -20.28 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.90 Total: 47.70 kcal Total: -73.65 2.13 -71.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132985222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.188 kcal (2) G-P(sol) polarization free energy of solvation -73.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds