Wall clock time and date at job start Tue Mar 31 2020 08:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47131 * 180.02562 * 4 3 2 6 6 H 1.09006 * 109.46758 * 304.99395 * 5 4 3 7 7 C 1.53001 * 109.47042 * 185.00232 * 5 4 3 8 8 N 1.46504 * 109.47033 * 184.99754 * 7 5 4 9 9 C 1.36936 * 120.00077 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00005 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00086 * 180.02562 * 9 8 7 12 12 N 1.31620 * 120.00166 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00180 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47200 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47244 * 119.99721 * 13 11 9 16 16 H 1.48503 * 109.47545 * 240.00047 * 13 11 9 17 17 N 1.46493 * 109.47485 * 64.99753 * 5 4 3 18 18 C 1.34782 * 120.00030 * 275.00143 * 17 5 4 19 19 O 1.21283 * 119.99677 * 359.97438 * 18 17 5 20 20 C 1.50700 * 119.99903 * 179.97438 * 18 17 5 21 21 F 1.39896 * 110.43881 * 308.91101 * 20 18 17 22 22 C 1.54807 * 110.48518 * 186.21972 * 20 18 17 23 23 C 1.54990 * 102.09379 * 220.44455 * 22 20 18 24 24 O 1.44378 * 103.48989 * 37.02345 * 23 22 20 25 25 C 1.43738 * 106.97797 * 319.94262 * 24 23 22 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 29 29 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 30 30 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09001 * 109.47289 * 299.99953 * 4 3 2 34 34 H 1.09004 * 109.47261 * 59.99697 * 4 3 2 35 35 H 1.09002 * 109.47334 * 304.99252 * 7 5 4 36 36 H 1.08996 * 109.47737 * 64.99614 * 7 5 4 37 37 H 0.97006 * 119.99970 * 359.97438 * 8 7 5 38 38 H 0.97000 * 120.00720 * 180.02562 * 12 11 9 39 39 H 0.97001 * 120.00202 * 95.00049 * 17 5 4 40 40 H 1.08998 * 110.91306 * 338.64544 * 22 20 18 41 41 H 1.09004 * 110.90776 * 102.24841 * 22 20 18 42 42 H 1.09001 * 110.61878 * 278.52587 * 23 22 20 43 43 H 1.09000 * 110.75400 * 155.59133 * 23 22 20 44 44 H 1.09005 * 109.87562 * 267.08620 * 25 24 23 45 45 H 1.08996 * 110.00370 * 146.00464 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 -0.8414 7 6 5.6047 2.8869 -0.1264 8 7 6.1030 4.2593 -0.0061 9 6 7.4469 4.5095 -0.0877 10 1 8.1395 3.6950 -0.2404 11 6 7.9190 5.8098 0.0268 12 7 7.0750 6.8024 0.2134 13 14 9.7522 6.1510 -0.0838 14 1 10.4815 4.8745 -0.2937 15 1 10.0176 7.0663 -1.2227 16 1 10.2152 6.7832 1.1777 17 7 3.6929 3.5393 1.2522 18 6 2.4756 4.1062 1.3682 19 8 1.7009 4.0750 0.4356 20 6 2.0773 4.7788 2.6566 21 9 2.3029 3.9264 3.7427 22 6 0.5924 5.2133 2.6044 23 6 0.6364 6.6030 3.2892 24 8 1.8858 7.1642 2.8323 25 6 2.8510 6.0991 2.8374 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.9337 0.9286 0.8891 34 1 3.9330 0.9288 -0.8909 35 1 6.0357 2.2733 0.6647 36 1 5.8894 2.4808 -1.0970 37 1 5.4810 4.9909 0.1314 38 1 7.4049 7.7111 0.2930 39 1 4.3127 3.5646 1.9980 40 1 0.2479 5.2982 1.5738 41 1 -0.0352 4.5221 3.1671 42 1 0.6375 6.4965 4.3740 43 1 -0.2023 7.2196 2.9660 44 1 3.3859 6.0883 3.7871 45 1 3.5560 6.2310 2.0166 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755359439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:04 Heat of formation + Delta-G solvation = -134.323097 kcal Electronic energy + Delta-G solvation = -26401.603905 eV Core-core repulsion = 22561.346555 eV Total energy + Delta-G solvation = -3840.257350 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 302.179 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.03137 -40.13847 -38.69281 -36.61102 -34.96666 -33.62367 -31.94483 -31.33464 -30.40858 -29.18286 -27.25642 -24.31002 -23.83416 -22.71289 -22.27682 -20.78968 -20.57205 -20.05429 -18.05697 -17.11420 -16.96224 -16.62691 -15.90544 -15.36971 -15.13818 -14.80101 -14.71842 -14.57955 -14.22502 -13.95148 -13.86995 -13.32681 -13.29687 -13.04445 -12.77187 -12.68572 -12.32763 -12.08565 -11.97751 -11.71691 -11.65086 -11.36229 -11.11723 -10.98344 -10.89475 -10.86277 -10.84030 -10.39886 -10.35842 -10.04477 -9.96649 -9.78333 -9.55232 -8.97157 -8.77594 -7.01543 -5.82636 -3.12793 2.52994 3.09105 3.40079 3.45984 3.48180 3.73783 3.93541 4.20274 4.50858 4.59690 4.74040 4.82396 4.87743 5.02997 5.07168 5.15301 5.35338 5.42037 5.45505 5.48920 5.51186 5.51644 5.67426 5.77888 5.78302 5.85039 5.87624 5.91536 5.93472 5.99375 6.11592 6.18367 6.24467 6.37168 6.42990 6.57067 6.62157 6.65090 6.82577 7.62239 7.64928 8.23610 8.35031 9.47113 10.01253 10.36703 11.39690 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.011054 B = 0.005250 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.466574 B = 5332.304086 C = 7417.066130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.127 4.127 5 C 0.136 3.864 6 H 0.090 0.910 7 C 0.144 3.856 8 N -0.732 5.732 9 C -0.244 4.244 10 H 0.071 0.929 11 C -0.010 4.010 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.696 5.696 18 C 0.511 3.489 19 O -0.520 6.520 20 C 0.068 3.932 21 F -0.187 7.187 22 C -0.164 4.164 23 C 0.045 3.955 24 O -0.361 6.361 25 C 0.035 3.965 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.026 0.974 36 H 0.036 0.964 37 H 0.385 0.615 38 H 0.256 0.744 39 H 0.407 0.593 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.115 -8.546 5.589 17.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.166 4.166 5 C 0.032 3.968 6 H 0.108 0.892 7 C 0.016 3.984 8 N -0.377 5.377 9 C -0.375 4.375 10 H 0.089 0.911 11 C -0.206 4.206 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.218 1.218 17 N -0.347 5.347 18 C 0.294 3.706 19 O -0.397 6.397 20 C 0.046 3.954 21 F -0.167 7.167 22 C -0.202 4.202 23 C -0.032 4.032 24 O -0.279 6.279 25 C -0.043 4.043 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.219 0.781 38 H 0.066 0.934 39 H 0.243 0.757 40 H 0.133 0.867 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.120 0.880 44 H 0.102 0.898 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.416 -8.409 4.847 17.379 hybrid contribution 1.219 0.188 0.576 1.361 sum -13.196 -8.220 5.423 16.466 Atomic orbital electron populations 1.21742 0.96232 1.00899 1.01824 1.21567 0.95650 0.97620 1.01431 1.21673 0.94789 0.95526 1.03041 1.21984 0.96091 0.96124 1.02412 1.21408 0.96359 0.92606 0.86418 0.89202 1.20978 0.88969 0.89482 0.98987 1.42343 1.05464 1.01917 1.87930 1.19247 0.83553 0.92548 1.42185 0.91062 1.24741 0.97710 0.95641 1.02549 1.69657 1.32855 0.99048 1.56229 0.86126 0.85052 0.77777 0.77239 1.20570 1.21832 1.21838 1.45952 1.15472 1.55778 1.17463 1.20126 0.82763 0.78930 0.88797 1.90706 1.51265 1.58136 1.39544 1.22586 0.98929 0.90780 0.83097 1.92917 1.95816 1.72276 1.55713 1.23671 0.92917 0.98098 1.05528 1.23627 0.87996 0.93171 0.98402 1.88980 1.19704 1.31675 1.87563 1.23824 0.92095 0.83271 1.05116 0.92788 0.93265 0.92999 0.92354 0.92551 0.91499 0.91984 0.91808 0.90895 0.95653 0.94680 0.78119 0.93435 0.75728 0.86673 0.88607 0.91709 0.88019 0.89752 0.86674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 2 C -0.13 -1.39 5.93 -26.73 -0.16 -1.55 16 3 C -0.11 -1.49 3.82 -26.73 -0.10 -1.59 16 4 C -0.13 -1.68 4.89 -26.73 -0.13 -1.81 16 5 C 0.14 2.18 2.41 -67.94 -0.16 2.02 16 6 H 0.09 1.62 7.58 -51.93 -0.39 1.23 16 7 C 0.14 2.69 5.82 -4.04 -0.02 2.67 16 8 N -0.73 -17.51 5.43 -59.91 -0.33 -17.84 16 9 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 10 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 12 N -0.93 -27.30 13.06 55.49 0.72 -26.57 16 13 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 17 N -0.70 -10.84 4.46 -53.81 -0.24 -11.08 16 18 C 0.51 8.03 5.23 -10.98 -0.06 7.97 16 19 O -0.52 -9.06 12.56 5.56 0.07 -8.99 16 20 C 0.07 0.94 1.55 -90.24 -0.14 0.80 16 21 F -0.19 -2.54 16.86 2.25 0.04 -2.50 16 22 C -0.16 -1.93 6.37 -24.73 -0.16 -2.09 16 23 C 0.04 0.49 7.72 38.21 0.29 0.79 16 24 O -0.36 -5.44 11.52 -35.23 -0.41 -5.84 16 25 C 0.03 0.51 7.22 37.73 0.27 0.78 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 32 H 0.06 0.91 5.64 -51.93 -0.29 0.62 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.38 9.78 7.33 -40.82 -0.30 9.48 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.41 6.25 8.60 -40.82 -0.35 5.90 16 40 H 0.11 1.48 6.81 -51.93 -0.35 1.13 16 41 H 0.10 0.95 8.12 -51.93 -0.42 0.52 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.08 1.15 8.03 -51.93 -0.42 0.73 16 45 H 0.12 1.96 7.68 -51.93 -0.40 1.56 16 LS Contribution 364.50 15.07 5.49 5.49 Total: -1.00 -30.23 364.50 -7.45 -37.68 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -7.53 Total: 13.03 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -0.24 Total: -0.29 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.16 Total: -55.49 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.34 Total: -14.84 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.23 -7.45 -37.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755359439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.646 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds