Wall clock time and date at job start Tue Mar 31 2020 09:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47083 * 2 1 4 4 H 1.08995 * 109.47412 * 305.23544 * 3 2 1 5 5 N 1.46503 * 109.47337 * 65.24021 * 3 2 1 6 6 C 1.39669 * 119.99978 * 274.99946 * 5 3 2 7 7 C 1.38912 * 120.07320 * 359.72106 * 6 5 3 8 8 C 1.38113 * 119.92157 * 179.76801 * 7 6 5 9 9 C 1.38281 * 120.07191 * 0.50707 * 8 7 6 10 10 C 1.38282 * 120.15441 * 359.74571 * 9 8 7 11 11 C 1.38109 * 120.07397 * 359.97438 * 10 9 8 12 12 C 1.50702 * 109.47041 * 185.23741 * 3 2 1 13 13 O 1.21281 * 120.00448 * 265.68926 * 12 3 2 14 14 N 1.34783 * 119.99982 * 85.68765 * 12 3 2 15 15 C 1.46497 * 120.00371 * 184.88921 * 14 12 3 16 16 C 1.52994 * 109.47224 * 175.68754 * 15 14 12 17 17 C 1.50700 * 115.54821 * 64.35526 * 16 15 14 18 18 H 1.08009 * 119.99914 * 268.03463 * 17 16 15 19 19 C 1.37877 * 120.00212 * 88.03787 * 17 16 15 20 20 N 1.31519 * 119.99797 * 179.80911 * 19 17 16 21 21 Si 1.86796 * 119.99816 * 359.80995 * 19 17 16 22 22 H 1.48502 * 109.47166 * 89.81599 * 21 19 17 23 23 H 1.48509 * 109.46990 * 209.81476 * 21 19 17 24 24 H 1.48500 * 109.47314 * 329.81429 * 21 19 17 25 25 C 1.52996 * 117.49993 * 278.68269 * 16 15 14 26 26 C 1.52997 * 117.50012 * 210.02121 * 16 15 14 27 27 H 1.09008 * 109.46783 * 60.00038 * 1 2 3 28 28 H 1.08997 * 109.47278 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47211 * 300.00373 * 1 2 3 30 30 H 1.08999 * 109.47180 * 240.00167 * 2 1 3 31 31 H 1.08999 * 109.46964 * 119.99812 * 2 1 3 32 32 H 0.97001 * 119.99675 * 94.99893 * 5 3 2 33 33 H 1.07994 * 120.03797 * 0.02562 * 7 6 5 34 34 H 1.08001 * 119.95851 * 180.25640 * 8 7 6 35 35 H 1.08005 * 119.92186 * 179.72330 * 9 8 7 36 36 H 1.07997 * 119.96248 * 179.97438 * 10 9 8 37 37 H 1.08001 * 120.03398 * 179.97438 * 11 10 9 38 38 H 0.97003 * 119.99667 * 4.90177 * 14 12 3 39 39 H 1.08996 * 109.47022 * 295.69391 * 15 14 12 40 40 H 1.09004 * 109.46571 * 55.68857 * 15 14 12 41 41 H 0.97001 * 119.99809 * 179.97438 * 20 19 17 42 42 H 1.08998 * 117.50144 * 0.02562 * 25 16 15 43 43 H 1.09012 * 117.50012 * 145.02234 * 25 16 15 44 44 H 1.09002 * 117.50529 * 214.98044 * 26 16 15 45 45 H 1.09002 * 117.50109 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9827 -0.8393 5 7 1.6574 2.0958 1.2542 6 6 0.3964 2.6831 1.3794 7 6 -0.4940 2.6538 0.3135 8 6 -1.7419 3.2314 0.4423 9 6 -2.1014 3.8475 1.6269 10 6 -1.2155 3.8830 2.6881 11 6 0.0318 3.3024 2.5681 12 6 3.5414 1.4445 -0.1297 13 8 4.2359 1.4923 0.8634 14 7 4.1126 1.3930 -1.3495 15 6 5.5685 1.2868 -1.4728 16 6 5.9459 1.1385 -2.9480 17 6 5.6175 2.3194 -3.8247 18 1 4.6706 2.3607 -4.3427 19 6 6.5258 3.3470 -3.9658 20 7 6.2408 4.3758 -4.7340 21 14 8.1613 3.2780 -3.0659 22 1 9.1679 2.5979 -3.9199 23 1 8.6192 4.6583 -2.7647 24 1 7.9970 2.5232 -1.7976 25 6 5.8342 -0.2553 -3.5691 26 6 7.2118 0.3447 -3.2770 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2799 2.1204 1.9978 33 1 -0.2123 2.1763 -0.6132 34 1 -2.4362 3.2053 -0.3846 35 1 -3.0763 4.3023 1.7235 36 1 -1.4993 4.3654 3.6117 37 1 0.7234 3.3309 3.3972 38 1 3.5595 1.4265 -2.1457 39 1 6.0339 2.1850 -1.0671 40 1 5.9173 0.4151 -0.9190 41 1 6.8796 5.0990 -4.8329 42 1 5.4914 -1.0665 -2.9269 43 1 5.5236 -0.3181 -4.6121 44 1 7.8070 0.6763 -4.1278 45 1 7.7760 -0.0715 -2.4424 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435958607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:59 Heat of formation + Delta-G solvation = 16.398785 kcal Electronic energy + Delta-G solvation = -24579.407015 eV Core-core repulsion = 21176.454680 eV Total energy + Delta-G solvation = -3402.952334 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.21832 -39.01392 -37.25323 -35.96557 -33.69426 -32.69438 -32.18897 -30.75232 -29.62385 -27.45233 -25.96368 -24.84611 -23.13359 -22.17033 -21.83930 -21.10214 -19.85534 -19.20797 -17.93680 -17.06874 -16.34915 -16.00933 -15.78617 -15.29268 -14.99341 -14.85509 -14.37740 -14.25239 -13.88604 -13.69239 -13.34709 -13.15891 -12.89288 -12.86437 -12.57826 -12.47515 -12.17670 -11.90650 -11.61665 -11.37515 -11.22688 -11.21715 -10.88301 -10.65804 -10.56561 -10.25031 -10.17356 -9.77822 -9.49813 -9.26193 -8.87221 -8.74778 -8.64340 -8.43685 -7.38208 -6.21903 -4.27431 1.44999 1.62993 2.81018 3.18452 3.23798 3.34588 3.38843 3.74390 3.92277 4.34125 4.69669 4.78768 4.86740 4.93274 4.98936 5.03653 5.08415 5.22710 5.25378 5.38707 5.47351 5.54758 5.59400 5.64523 5.76429 5.86743 5.94191 5.98654 5.98939 6.02729 6.13851 6.19402 6.32462 6.35379 6.40963 6.49535 6.63205 6.64570 6.83450 6.89340 6.96959 7.01431 7.31633 7.60791 7.75009 7.98820 8.33729 8.53843 8.77512 9.40936 10.89244 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.018923 B = 0.003519 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.357791 B = 7954.599618 C = 8386.585023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.131 4.131 3 C 0.135 3.865 4 H 0.099 0.901 5 N -0.727 5.727 6 C 0.224 3.776 7 C -0.200 4.200 8 C -0.076 4.076 9 C -0.185 4.185 10 C -0.075 4.075 11 C -0.199 4.199 12 C 0.504 3.496 13 O -0.553 6.553 14 N -0.695 5.695 15 C 0.156 3.844 16 C -0.016 4.016 17 C -0.494 4.494 18 H 0.079 0.921 19 C 0.081 3.919 20 N -0.893 5.893 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.258 1.258 25 C -0.177 4.177 26 C -0.193 4.193 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.409 0.591 33 H 0.129 0.871 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.407 0.593 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.266 0.734 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.541 -6.335 10.148 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.170 4.170 3 C 0.026 3.974 4 H 0.117 0.883 5 N -0.357 5.357 6 C 0.120 3.880 7 C -0.222 4.222 8 C -0.094 4.094 9 C -0.205 4.205 10 C -0.094 4.094 11 C -0.221 4.221 12 C 0.289 3.711 13 O -0.432 6.432 14 N -0.344 5.344 15 C 0.032 3.968 16 C -0.017 4.017 17 C -0.531 4.531 18 H 0.097 0.903 19 C -0.122 4.122 20 N -0.529 5.529 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.183 1.183 25 C -0.215 4.215 26 C -0.231 4.231 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.246 0.754 33 H 0.147 0.853 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.242 0.758 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.893 -6.213 10.577 17.796 hybrid contribution 1.080 0.162 0.214 1.113 sum -11.813 -6.052 10.791 17.106 Atomic orbital electron populations 1.22150 0.94729 1.01729 1.02629 1.21931 0.97069 0.94738 1.03274 1.20799 0.92398 0.95049 0.89202 0.88289 1.44470 1.14443 1.61355 1.15450 1.17807 0.85185 0.91208 0.93804 1.20991 0.95061 1.07249 0.98941 1.20874 0.95544 0.95798 0.97231 1.20853 1.00253 1.05032 0.94407 1.20821 0.92994 0.97265 0.98275 1.20575 0.98483 1.05860 0.97206 1.20469 0.89704 0.76956 0.84013 1.90651 1.64388 1.50874 1.37300 1.45851 1.09242 1.71903 1.07357 1.21179 0.78701 1.00144 0.96752 1.19604 0.97975 0.92300 0.91820 1.20175 1.04671 1.00905 1.27332 0.90326 1.24973 0.98320 0.94775 0.94178 1.69881 1.36330 1.09033 1.37696 0.86852 0.84119 0.76909 0.81353 1.20340 1.22056 1.18271 1.22852 1.00348 0.97023 1.01252 1.22957 0.91305 1.06178 1.02665 0.92124 0.92839 0.91369 0.90507 0.91061 0.75416 0.85317 0.86379 0.86816 0.86508 0.86423 0.75805 0.91766 0.93538 0.92397 0.90906 0.89332 0.89086 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 8.23 37.16 0.31 -1.19 16 2 C -0.13 -1.44 5.59 -26.73 -0.15 -1.59 16 3 C 0.14 1.75 2.61 -69.08 -0.18 1.57 16 4 H 0.10 1.21 6.47 -51.93 -0.34 0.87 16 5 N -0.73 -9.46 5.16 -53.29 -0.28 -9.73 16 6 C 0.22 2.77 5.49 -83.79 -0.46 2.31 16 7 C -0.20 -2.29 6.73 -39.38 -0.26 -2.56 16 8 C -0.08 -0.80 10.04 -39.61 -0.40 -1.19 16 9 C -0.19 -1.90 10.04 -39.55 -0.40 -2.30 16 10 C -0.07 -0.79 10.04 -39.61 -0.40 -1.18 16 11 C -0.20 -2.31 9.90 -39.38 -0.39 -2.70 16 12 C 0.50 8.46 7.03 -10.98 -0.08 8.38 16 13 O -0.55 -11.02 16.02 5.56 0.09 -10.93 16 14 N -0.69 -12.16 5.47 -60.30 -0.33 -12.49 16 15 C 0.16 3.15 5.18 -4.05 -0.02 3.13 16 16 C -0.02 -0.33 0.85 -155.67 -0.13 -0.47 16 17 C -0.49 -12.59 9.16 -34.44 -0.32 -12.90 16 18 H 0.08 2.15 8.06 -52.48 -0.42 1.73 16 19 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 20 N -0.89 -26.00 13.96 55.43 0.77 -25.23 16 21 Si 0.88 21.10 24.75 -169.99 -4.21 16.90 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.26 -5.96 5.89 56.52 0.33 -5.63 16 25 C -0.18 -3.26 9.96 -26.70 -0.27 -3.52 16 26 C -0.19 -3.85 7.52 -26.70 -0.20 -4.05 16 27 H 0.06 0.53 6.38 -51.92 -0.33 0.20 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.73 5.39 -51.93 -0.28 0.45 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.41 5.59 7.80 -40.82 -0.32 5.27 16 33 H 0.13 1.37 4.03 -52.49 -0.21 1.15 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.11 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.41 6.60 8.31 -40.82 -0.34 6.26 16 39 H 0.06 1.46 6.89 -51.93 -0.36 1.10 16 40 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 44 H 0.09 1.91 7.09 -51.93 -0.37 1.54 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 357.20 15.07 5.38 5.38 Total: -1.00 -29.67 357.20 -8.83 -38.50 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -6.82 Total: 13.76 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -3.44 Total: -16.15 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.17 Total: -47.45 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.21 Total: 16.90 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.67 -8.83 -38.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435958607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.895 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds