Wall clock time and date at job start Tue Mar 31 2020 09:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47083 * 2 1 4 4 H 1.08995 * 109.47412 * 305.23544 * 3 2 1 5 5 N 1.46503 * 109.47337 * 65.24021 * 3 2 1 6 6 C 1.39669 * 119.99978 * 274.99946 * 5 3 2 7 7 C 1.38912 * 120.07320 * 359.72106 * 6 5 3 8 8 C 1.38113 * 119.92157 * 179.76801 * 7 6 5 9 9 C 1.38281 * 120.07191 * 0.50707 * 8 7 6 10 10 C 1.38282 * 120.15441 * 359.74571 * 9 8 7 11 11 C 1.38109 * 120.07397 * 359.97438 * 10 9 8 12 12 C 1.50702 * 109.47041 * 185.23741 * 3 2 1 13 13 O 1.21281 * 120.00448 * 265.68926 * 12 3 2 14 14 N 1.34783 * 119.99982 * 85.68765 * 12 3 2 15 15 C 1.46497 * 120.00371 * 184.88921 * 14 12 3 16 16 C 1.52994 * 109.47224 * 175.68754 * 15 14 12 17 17 C 1.50700 * 115.54821 * 64.35526 * 16 15 14 18 18 H 1.08009 * 119.99914 * 268.03463 * 17 16 15 19 19 C 1.37877 * 120.00212 * 88.03787 * 17 16 15 20 20 N 1.31519 * 119.99797 * 179.80911 * 19 17 16 21 21 Si 1.86796 * 119.99816 * 359.80995 * 19 17 16 22 22 H 1.48502 * 109.47166 * 89.81599 * 21 19 17 23 23 H 1.48509 * 109.46990 * 209.81476 * 21 19 17 24 24 H 1.48500 * 109.47314 * 329.81429 * 21 19 17 25 25 C 1.52996 * 117.49993 * 278.68269 * 16 15 14 26 26 C 1.52997 * 117.50012 * 210.02121 * 16 15 14 27 27 H 1.09008 * 109.46783 * 60.00038 * 1 2 3 28 28 H 1.08997 * 109.47278 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47211 * 300.00373 * 1 2 3 30 30 H 1.08999 * 109.47180 * 240.00167 * 2 1 3 31 31 H 1.08999 * 109.46964 * 119.99812 * 2 1 3 32 32 H 0.97001 * 119.99675 * 94.99893 * 5 3 2 33 33 H 1.07994 * 120.03797 * 0.02562 * 7 6 5 34 34 H 1.08001 * 119.95851 * 180.25640 * 8 7 6 35 35 H 1.08005 * 119.92186 * 179.72330 * 9 8 7 36 36 H 1.07997 * 119.96248 * 179.97438 * 10 9 8 37 37 H 1.08001 * 120.03398 * 179.97438 * 11 10 9 38 38 H 0.97003 * 119.99667 * 4.90177 * 14 12 3 39 39 H 1.08996 * 109.47022 * 295.69391 * 15 14 12 40 40 H 1.09004 * 109.46571 * 55.68857 * 15 14 12 41 41 H 0.97001 * 119.99809 * 179.97438 * 20 19 17 42 42 H 1.08998 * 117.50144 * 0.02562 * 25 16 15 43 43 H 1.09012 * 117.50012 * 145.02234 * 25 16 15 44 44 H 1.09002 * 117.50529 * 214.98044 * 26 16 15 45 45 H 1.09002 * 117.50109 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9827 -0.8393 5 7 1.6574 2.0958 1.2542 6 6 0.3964 2.6831 1.3794 7 6 -0.4940 2.6538 0.3135 8 6 -1.7419 3.2314 0.4423 9 6 -2.1014 3.8475 1.6269 10 6 -1.2155 3.8830 2.6881 11 6 0.0318 3.3024 2.5681 12 6 3.5414 1.4445 -0.1297 13 8 4.2359 1.4923 0.8634 14 7 4.1126 1.3930 -1.3495 15 6 5.5685 1.2868 -1.4728 16 6 5.9459 1.1385 -2.9480 17 6 5.6175 2.3194 -3.8247 18 1 4.6706 2.3607 -4.3427 19 6 6.5258 3.3470 -3.9658 20 7 6.2408 4.3758 -4.7340 21 14 8.1613 3.2780 -3.0659 22 1 9.1679 2.5979 -3.9199 23 1 8.6192 4.6583 -2.7647 24 1 7.9970 2.5232 -1.7976 25 6 5.8342 -0.2553 -3.5691 26 6 7.2118 0.3447 -3.2770 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2799 2.1204 1.9978 33 1 -0.2123 2.1763 -0.6132 34 1 -2.4362 3.2053 -0.3846 35 1 -3.0763 4.3023 1.7235 36 1 -1.4993 4.3654 3.6117 37 1 0.7234 3.3309 3.3972 38 1 3.5595 1.4265 -2.1457 39 1 6.0339 2.1850 -1.0671 40 1 5.9173 0.4151 -0.9190 41 1 6.8796 5.0990 -4.8329 42 1 5.4914 -1.0665 -2.9269 43 1 5.5236 -0.3181 -4.6121 44 1 7.8070 0.6763 -4.1278 45 1 7.7760 -0.0715 -2.4424 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435958607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:58 Heat of formation + Delta-G solvation = -2.184964 kcal Electronic energy + Delta-G solvation = -24580.212867 eV Core-core repulsion = 21176.454680 eV Total energy + Delta-G solvation = -3403.758186 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.36946 -40.11260 -38.80711 -36.99706 -35.14834 -34.22873 -33.59595 -31.58418 -30.55343 -28.81866 -27.63843 -26.25238 -23.97409 -23.39006 -23.03321 -22.18149 -21.28883 -20.69210 -19.03906 -18.52141 -17.74331 -17.20969 -16.96760 -16.77533 -16.28586 -16.10330 -15.56212 -15.45320 -15.06399 -14.77521 -14.70928 -14.38760 -14.25198 -14.10672 -13.91893 -13.74476 -13.34701 -13.11355 -12.96325 -12.69236 -12.45750 -12.20068 -12.16840 -12.02020 -11.99038 -11.60307 -11.48515 -11.12710 -11.00250 -10.88676 -10.68657 -10.33835 -9.97104 -9.69840 -8.31436 -8.29427 -6.37813 0.62022 0.78241 1.31752 1.38295 1.46872 1.50253 1.99160 2.34513 2.60677 3.04234 3.07911 3.21068 3.67364 3.87654 3.93660 4.00611 4.13432 4.22105 4.34964 4.36382 4.40423 4.45835 4.49479 4.51526 4.69997 4.71157 4.79312 4.83510 4.86419 4.92479 5.08567 5.09171 5.16738 5.22992 5.27824 5.42110 5.45943 5.47840 5.50455 5.68402 5.68651 5.82923 6.01560 6.26794 6.38929 6.60807 6.71883 6.76640 7.17402 7.33310 8.82988 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.018923 B = 0.003519 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.357791 B = 7954.599618 C = 8386.585023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.145 3.855 4 H 0.108 0.892 5 N -0.733 5.733 6 C 0.206 3.794 7 C -0.208 4.208 8 C -0.082 4.082 9 C -0.188 4.188 10 C -0.081 4.081 11 C -0.213 4.213 12 C 0.504 3.496 13 O -0.586 6.586 14 N -0.694 5.694 15 C 0.165 3.835 16 C -0.039 4.039 17 C -0.479 4.479 18 H 0.049 0.951 19 C 0.027 3.973 20 N -0.943 5.943 21 Si 0.928 3.072 22 H -0.266 1.266 23 H -0.305 1.305 24 H -0.243 1.243 25 C -0.148 4.148 26 C -0.195 4.195 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.403 0.597 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.413 0.587 39 H 0.033 0.967 40 H 0.061 0.939 41 H 0.264 0.736 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.649 -8.032 10.870 19.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.035 3.965 4 H 0.126 0.874 5 N -0.364 5.364 6 C 0.104 3.896 7 C -0.230 4.230 8 C -0.100 4.100 9 C -0.208 4.208 10 C -0.099 4.099 11 C -0.236 4.236 12 C 0.290 3.710 13 O -0.467 6.467 14 N -0.343 5.343 15 C 0.041 3.959 16 C -0.040 4.040 17 C -0.517 4.517 18 H 0.067 0.933 19 C -0.171 4.171 20 N -0.582 5.582 21 Si 0.754 3.246 22 H -0.191 1.191 23 H -0.233 1.233 24 H -0.167 1.167 25 C -0.185 4.185 26 C -0.233 4.233 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.239 0.761 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.138 0.862 38 H 0.249 0.751 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.123 0.877 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.033 -7.938 11.295 19.686 hybrid contribution 1.305 0.695 -0.010 1.479 sum -12.728 -7.243 11.286 18.489 Atomic orbital electron populations 1.22087 0.93394 1.02513 1.02566 1.21904 0.98075 0.93047 1.03315 1.20783 0.89374 0.96641 0.89671 0.87439 1.44468 1.14786 1.62077 1.15098 1.17991 0.85098 0.91971 0.94585 1.21152 0.95410 1.07539 0.98913 1.21193 0.95512 0.95247 0.98090 1.21198 1.01082 1.04427 0.94108 1.21127 0.92532 0.96924 0.99361 1.20782 0.99279 1.06244 0.97282 1.21121 0.91250 0.75541 0.83066 1.90632 1.65588 1.52184 1.38259 1.45823 1.08369 1.72090 1.08060 1.20895 0.80097 0.99240 0.95712 1.19430 1.00451 0.92354 0.91789 1.20376 1.02961 1.01981 1.26338 0.93307 1.25689 1.01548 0.94737 0.95130 1.70011 1.37636 1.10247 1.40351 0.86064 0.80934 0.76467 0.81129 1.19122 1.23271 1.16677 1.22885 0.98605 0.95559 1.01501 1.23025 0.91568 1.05732 1.02997 0.91163 0.91601 0.92424 0.89481 0.91949 0.76135 0.84734 0.84299 0.84685 0.84484 0.86163 0.75094 0.94861 0.92127 0.92706 0.87735 0.89475 0.90392 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.23 71.98 0.59 -1.96 16 2 C -0.12 -2.52 5.59 30.59 0.17 -2.35 16 3 C 0.14 3.63 2.61 44.24 0.12 3.74 16 4 H 0.11 2.50 6.47 -2.39 -0.02 2.49 16 5 N -0.73 -18.91 5.16 -322.51 -1.67 -20.57 16 6 C 0.21 4.97 5.49 38.21 0.21 5.18 16 7 C -0.21 -4.48 6.73 22.40 0.15 -4.33 16 8 C -0.08 -1.55 10.04 22.25 0.22 -1.33 16 9 C -0.19 -3.45 10.04 22.29 0.22 -3.22 16 10 C -0.08 -1.57 10.04 22.25 0.22 -1.35 16 11 C -0.21 -4.83 9.90 22.40 0.22 -4.60 16 12 C 0.50 16.61 7.03 87.66 0.62 17.23 16 13 O -0.59 -23.26 16.02 -3.03 -0.05 -23.31 16 14 N -0.69 -23.68 5.47 -463.07 -2.53 -26.21 16 15 C 0.16 6.46 5.18 86.38 0.45 6.91 16 16 C -0.04 -1.60 0.85 -52.93 -0.05 -1.64 16 17 C -0.48 -24.59 9.16 25.60 0.23 -24.36 16 18 H 0.05 2.74 8.06 -2.91 -0.02 2.71 16 19 C 0.03 1.50 5.47 84.65 0.46 1.97 16 20 N -0.94 -56.57 13.96 21.45 0.30 -56.27 16 21 Si 0.93 43.60 24.75 68.60 1.70 45.30 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 24 H -0.24 -10.74 5.89 99.48 0.59 -10.15 16 25 C -0.15 -4.99 9.96 30.62 0.30 -4.69 16 26 C -0.20 -7.25 7.52 30.62 0.23 -7.02 16 27 H 0.07 1.07 6.38 -2.38 -0.02 1.05 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 1.14 5.39 -2.39 -0.01 1.12 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.40 11.18 7.80 -92.71 -0.72 10.46 16 33 H 0.14 2.63 4.03 -2.91 -0.01 2.62 16 34 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.12 2.54 8.06 -2.91 -0.02 2.51 16 38 H 0.41 13.02 8.31 -92.71 -0.77 12.25 16 39 H 0.03 1.50 6.89 -2.39 -0.02 1.48 16 40 H 0.06 2.21 8.10 -2.39 -0.02 2.19 16 41 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 43 H 0.09 2.98 8.14 -2.38 -0.02 2.96 16 44 H 0.08 3.11 7.09 -2.39 -0.02 3.09 16 45 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -64.86 357.20 1.53 -63.33 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: -0.61 Total: 39.56 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 4.38 Total: -21.83 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -3.90 Total: -103.05 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.05 Total: -23.31 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.70 Total: 45.30 kcal Total: -64.86 1.53 -63.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435958607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.146 kcal (2) G-P(sol) polarization free energy of solvation -64.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds