Wall clock time and date at job start Tue Mar 31 2020 08:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47602 * 2 1 4 4 C 1.50703 * 109.47349 * 119.99896 * 2 1 3 5 5 O 1.21284 * 120.00469 * 144.11014 * 4 2 1 6 6 N 1.34783 * 119.99354 * 324.10765 * 4 2 1 7 7 C 1.40170 * 120.55739 * 337.93076 * 6 4 2 8 8 C 1.39033 * 119.14028 * 346.78579 * 7 6 4 9 9 C 1.38032 * 120.03574 * 179.61988 * 8 7 6 10 10 C 1.38302 * 119.90526 * 0.02562 * 9 8 7 11 11 C 1.38122 * 120.15664 * 0.06230 * 10 9 8 12 12 C 1.38520 * 120.30127 * 359.97438 * 11 10 9 13 13 C 1.50592 * 118.93773 * 179.86517 * 12 11 10 14 14 C 1.52846 * 110.50380 * 159.35326 * 13 12 11 15 15 C 1.46915 * 120.46206 * 157.82641 * 6 4 2 16 16 H 1.08994 * 109.69100 * 105.01258 * 15 6 4 17 17 C 1.52996 * 109.90268 * 344.15210 * 15 6 4 18 18 N 1.46508 * 109.47251 * 239.99503 * 2 1 3 19 19 C 1.46494 * 119.99695 * 300.00040 * 18 2 1 20 20 C 1.36936 * 119.99980 * 120.00118 * 18 2 1 21 21 H 1.08004 * 120.00094 * 24.73206 * 20 18 2 22 22 C 1.38809 * 119.99739 * 204.73637 * 20 18 2 23 23 N 1.31611 * 120.00084 * 6.44426 * 22 20 18 24 24 Si 1.86806 * 119.99696 * 186.44640 * 22 20 18 25 25 H 1.48500 * 109.46968 * 90.00172 * 24 22 20 26 26 H 1.48498 * 109.46722 * 209.99662 * 24 22 20 27 27 H 1.48493 * 109.47042 * 330.00079 * 24 22 20 28 28 H 1.08996 * 109.47018 * 163.32756 * 1 2 3 29 29 H 1.08998 * 109.47017 * 283.32418 * 1 2 3 30 30 H 1.09000 * 109.46895 * 43.32628 * 1 2 3 31 31 H 1.08004 * 119.98579 * 359.59584 * 8 7 6 32 32 H 1.08004 * 120.05324 * 180.02562 * 9 8 7 33 33 H 1.08005 * 119.92863 * 180.08542 * 10 9 8 34 34 H 1.07993 * 119.85271 * 180.02562 * 11 10 9 35 35 H 1.09002 * 109.26385 * 39.08946 * 13 12 11 36 36 H 1.08998 * 109.24162 * 279.60273 * 13 12 11 37 37 H 1.09000 * 109.57545 * 171.22368 * 14 13 12 38 38 H 1.09001 * 109.57279 * 291.47557 * 14 13 12 39 39 H 1.09006 * 109.47080 * 310.61055 * 17 15 6 40 40 H 1.09002 * 109.47065 * 70.60298 * 17 15 6 41 41 H 1.08994 * 109.47684 * 190.60843 * 17 15 6 42 42 H 1.09007 * 109.47045 * 95.10376 * 19 18 2 43 43 H 1.09005 * 109.47029 * 215.09780 * 19 18 2 44 44 H 1.08996 * 109.47729 * 335.10084 * 19 18 2 45 45 H 0.97000 * 119.99909 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 3.0367 -1.3877 1.1722 6 7 1.3654 -0.5929 2.3958 7 6 0.5133 0.4967 2.6226 8 6 0.5690 1.5896 1.7650 9 6 -0.2671 2.6692 1.9664 10 6 -1.1598 2.6624 3.0228 11 6 -1.2155 1.5785 3.8771 12 6 -0.3794 0.4914 3.6824 13 6 -0.4639 -0.6726 4.6341 14 6 0.1228 -1.9307 3.9947 15 6 1.5190 -1.6073 3.4474 16 1 2.1466 -1.2148 4.2474 17 6 2.1525 -2.8714 2.8631 18 7 2.0183 -0.6907 -1.1962 19 6 1.6644 -2.0933 -1.4278 20 6 2.8056 -0.0253 -2.0976 21 1 3.3906 0.8250 -1.7793 22 6 2.8517 -0.4436 -3.4203 23 7 2.0458 -1.3967 -3.8376 24 14 4.0579 0.3463 -4.6081 25 1 5.3387 -0.4049 -4.5856 26 1 3.4915 0.3179 -5.9805 27 1 4.3023 1.7537 -4.2024 28 1 -0.3633 -0.9844 -0.2948 29 1 -0.3633 0.2368 1.0000 30 1 -0.3633 0.7476 -0.7051 31 1 1.2671 1.5941 0.9409 32 1 -0.2244 3.5182 1.3001 33 1 -1.8151 3.5064 3.1799 34 1 -1.9147 1.5781 4.7001 35 1 -1.5080 -0.8526 4.8902 36 1 0.0932 -0.4364 5.5407 37 1 0.1976 -2.7198 4.7429 38 1 -0.5213 -2.2604 3.1795 39 1 1.6193 -3.1596 1.9571 40 1 3.1977 -2.6764 2.6231 41 1 2.0918 -3.6789 3.5927 42 1 0.7887 -2.1449 -2.0750 43 1 2.5000 -2.6047 -1.9057 44 1 1.4411 -2.5738 -0.4753 45 1 2.0778 -1.6888 -4.7620 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:17 Heat of formation + Delta-G solvation = 50.678607 kcal Electronic energy + Delta-G solvation = -26465.401180 eV Core-core repulsion = 23063.935330 eV Total energy + Delta-G solvation = -3401.465850 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.70162 -39.84453 -38.24866 -36.93225 -35.68113 -33.66788 -32.75569 -31.38707 -30.21221 -28.89372 -28.17036 -26.05659 -25.39174 -24.37509 -23.31072 -22.57613 -21.52443 -19.91833 -19.09829 -18.20249 -17.68460 -17.38450 -16.86459 -16.50285 -15.85852 -15.77916 -15.23697 -15.13939 -14.85454 -14.66846 -14.58515 -14.37876 -14.11227 -13.83934 -13.53464 -13.24044 -13.15416 -12.95237 -12.92566 -12.84016 -12.58431 -12.53769 -12.32503 -12.18354 -12.16295 -11.96114 -11.83017 -11.57129 -11.42828 -10.92358 -10.78001 -10.43206 -9.46245 -8.87403 -8.60147 -7.88162 -5.40432 0.38369 0.52047 1.43061 1.46424 1.53426 1.57259 1.84311 2.46854 2.92035 3.25957 3.45138 3.50899 3.74156 3.83361 3.87754 3.96823 4.15568 4.21501 4.25794 4.29121 4.44439 4.47409 4.55126 4.63815 4.67803 4.74003 4.79346 4.87188 4.91697 4.95812 5.00239 5.07540 5.20002 5.22509 5.24158 5.27157 5.29657 5.35265 5.53890 5.59304 5.62626 5.74185 5.82644 6.09192 6.23092 6.44766 7.01095 7.12116 7.73332 8.19196 9.15813 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.018956 B = 0.005139 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.782602 B = 5447.254696 C = 6382.829075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.151 3.849 3 H 0.106 0.894 4 C 0.501 3.499 5 O -0.535 6.535 6 N -0.565 5.565 7 C 0.147 3.853 8 C -0.186 4.186 9 C -0.106 4.106 10 C -0.141 4.141 11 C -0.093 4.093 12 C -0.129 4.129 13 C -0.072 4.072 14 C -0.123 4.123 15 C 0.132 3.868 16 H 0.084 0.916 17 C -0.149 4.149 18 N -0.590 5.590 19 C 0.198 3.802 20 C -0.271 4.271 21 H 0.069 0.931 22 C -0.046 4.046 23 N -0.937 5.937 24 Si 0.976 3.024 25 H -0.290 1.290 26 H -0.288 1.288 27 H -0.264 1.264 28 H 0.033 0.967 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.057 0.943 39 H 0.028 0.972 40 H 0.058 0.942 41 H 0.091 0.909 42 H 0.013 0.987 43 H 0.011 0.989 44 H 0.002 0.998 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.666 5.121 20.428 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.040 3.960 3 H 0.123 0.877 4 C 0.289 3.711 5 O -0.409 6.409 6 N -0.291 5.291 7 C 0.052 3.948 8 C -0.205 4.205 9 C -0.124 4.124 10 C -0.160 4.160 11 C -0.111 4.111 12 C -0.132 4.132 13 C -0.108 4.108 14 C -0.161 4.161 15 C 0.030 3.970 16 H 0.102 0.898 17 C -0.206 4.206 18 N -0.312 5.312 19 C 0.053 3.947 20 C -0.400 4.400 21 H 0.087 0.913 22 C -0.242 4.242 23 N -0.583 5.583 24 Si 0.803 3.197 25 H -0.217 1.217 26 H -0.214 1.214 27 H -0.188 1.188 28 H 0.052 0.948 29 H 0.123 0.877 30 H 0.078 0.922 31 H 0.149 0.851 32 H 0.156 0.844 33 H 0.166 0.834 34 H 0.173 0.827 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.129 0.871 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.031 0.969 43 H 0.030 0.970 44 H 0.020 0.980 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.044 4.568 20.171 22.573 hybrid contribution 1.024 -0.098 -1.482 1.804 sum -8.020 4.470 18.690 20.823 Atomic orbital electron populations 1.22925 0.94267 1.01263 1.04090 1.21080 0.95014 0.95484 0.84390 0.87688 1.22483 0.82426 0.81271 0.84916 1.90598 1.24094 1.40865 1.85386 1.46200 1.43483 1.23601 1.15783 1.17727 0.92751 0.87195 0.97085 1.21965 1.03496 0.93737 1.01351 1.21161 0.95430 0.97288 0.98524 1.21365 0.99723 0.99719 0.95146 1.21235 0.98101 0.91969 0.99832 1.19758 0.96960 0.99034 0.97406 1.20462 1.03479 0.90247 0.96638 1.21935 0.93529 0.99386 1.01282 1.21610 0.98693 0.87727 0.88946 0.89833 1.22068 1.01605 0.96678 1.00261 1.43840 1.58213 1.08258 1.20878 1.20317 0.97460 0.83635 0.93313 1.19529 1.19078 1.12401 0.89004 0.91291 1.25862 1.00423 0.99510 0.98356 1.70223 1.39988 1.32267 1.15837 0.85145 0.77923 0.78654 0.77956 1.21678 1.21422 1.18844 0.94828 0.87705 0.92186 0.85144 0.84352 0.83365 0.82725 0.87819 0.88940 0.87053 0.92451 0.95246 0.92331 0.88998 0.96909 0.97001 0.97960 0.94039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.44 7.95 71.98 0.57 -5.87 16 2 C 0.15 6.64 2.22 44.24 0.10 6.74 16 3 H 0.11 4.50 5.39 -2.39 -0.01 4.49 16 4 C 0.50 21.06 5.36 87.66 0.47 21.53 16 5 O -0.53 -26.20 12.93 -3.04 -0.04 -26.24 16 6 N -0.56 -18.56 2.86 -607.17 -1.73 -20.30 16 7 C 0.15 4.14 4.42 38.08 0.17 4.30 16 8 C -0.19 -5.29 6.02 22.41 0.13 -5.16 16 9 C -0.11 -2.35 10.05 22.24 0.22 -2.13 16 10 C -0.14 -2.47 10.04 22.26 0.22 -2.24 16 11 C -0.09 -1.56 9.66 22.31 0.22 -1.34 16 12 C -0.13 -2.72 5.76 -19.75 -0.11 -2.83 16 13 C -0.07 -1.09 5.78 29.76 0.17 -0.92 16 14 C -0.12 -2.32 5.40 30.68 0.17 -2.15 16 15 C 0.13 3.51 3.39 45.05 0.15 3.66 16 16 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 17 C -0.15 -4.51 7.82 71.98 0.56 -3.94 16 18 N -0.59 -32.10 2.50 -706.98 -1.77 -33.87 16 19 C 0.20 11.01 7.42 127.77 0.95 11.96 16 20 C -0.27 -15.70 9.59 84.03 0.81 -14.90 16 21 H 0.07 3.88 7.81 -2.91 -0.02 3.86 16 22 C -0.05 -2.69 5.22 84.86 0.44 -2.25 16 23 N -0.94 -57.33 10.48 21.65 0.23 -57.10 16 24 Si 0.98 46.60 29.56 68.60 2.03 48.63 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 26 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 28 H 0.03 1.40 7.19 -2.39 -0.02 1.38 16 29 H 0.11 3.48 3.32 -2.44 -0.01 3.47 16 30 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.13 4.32 3.40 -2.91 -0.01 4.31 16 32 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 33 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.10 1.11 8.12 -2.39 -0.02 1.09 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.03 1.04 7.63 -2.38 -0.02 1.02 16 40 H 0.06 2.14 6.24 -2.39 -0.01 2.13 16 41 H 0.09 2.05 8.13 -2.39 -0.02 2.03 16 42 H 0.01 0.75 7.34 -2.38 -0.02 0.73 16 43 H 0.01 0.69 7.28 -2.38 -0.02 0.68 16 44 H 0.00 0.10 7.11 -2.39 -0.02 0.09 16 45 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -73.37 337.88 4.94 -68.42 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.99 Total: 16.00 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 5.24 Total: 4.45 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -3.27 Total: -111.26 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.04 Total: -26.24 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -73.37 4.94 -68.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.101 kcal (2) G-P(sol) polarization free energy of solvation -73.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds