Wall clock time and date at job start Tue Mar 31 2020 09:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.00545 * 2 1 4 4 C 1.47210 * 110.10556 * 121.48720 * 2 1 3 5 5 C 1.52480 * 114.06975 * 177.59209 * 4 2 1 6 6 N 1.43914 * 105.40646 * 269.52330 * 5 4 2 7 7 C 1.46903 * 110.99645 * 223.42517 * 6 5 4 8 8 C 1.48823 * 112.04133 * 98.71096 * 6 5 4 9 9 C 1.54531 * 110.68062 * 320.99332 * 8 6 5 10 10 N 1.43661 * 116.17088 * 318.28206 * 9 8 6 11 11 C 1.34777 * 120.55146 * 269.14438 * 10 9 8 12 12 O 1.21582 * 119.99732 * 174.23111 * 11 10 9 13 13 C 1.47638 * 120.00057 * 354.22142 * 11 10 9 14 14 C 1.40015 * 119.89663 * 23.11291 * 13 11 10 15 15 C 1.36317 * 120.10719 * 180.02562 * 14 13 11 16 16 C 1.40882 * 119.89139 * 359.97313 * 15 14 13 17 17 C 1.41114 * 120.10085 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00269 * 29.37188 * 17 16 15 19 19 C 1.40222 * 119.99978 * 209.37388 * 17 16 15 20 20 N 1.30653 * 119.99967 * 11.88381 * 19 17 16 21 21 Si 1.86801 * 120.00382 * 191.88527 * 19 17 16 22 22 H 1.48499 * 109.46980 * 89.99562 * 21 19 17 23 23 H 1.48494 * 109.47327 * 209.99810 * 21 19 17 24 24 H 1.48497 * 109.46776 * 330.00287 * 21 19 17 25 25 C 1.40887 * 119.79639 * 359.97438 * 16 15 14 26 26 C 1.36315 * 119.88960 * 0.02562 * 25 16 15 27 27 H 1.08998 * 109.47637 * 188.41159 * 1 2 3 28 28 H 1.09002 * 109.47347 * 308.41315 * 1 2 3 29 29 H 1.09005 * 109.47241 * 68.40962 * 1 2 3 30 30 H 1.08998 * 108.66546 * 56.34176 * 4 2 1 31 31 H 1.08998 * 108.37085 * 298.62540 * 4 2 1 32 32 H 1.08997 * 110.25050 * 150.55445 * 5 4 2 33 33 H 1.08998 * 110.24800 * 28.49660 * 5 4 2 34 34 H 1.08996 * 109.47132 * 290.74029 * 7 6 5 35 35 H 1.08992 * 109.47359 * 50.74577 * 7 6 5 36 36 H 1.09003 * 109.47033 * 170.74732 * 7 6 5 37 37 H 1.08995 * 109.22847 * 200.68637 * 8 6 5 38 38 H 1.08997 * 109.23405 * 81.30479 * 8 6 5 39 39 H 1.09003 * 108.14140 * 196.54266 * 9 8 6 40 40 H 1.09001 * 107.98355 * 79.89761 * 9 8 6 41 41 H 1.07994 * 119.94526 * 0.02562 * 14 13 11 42 42 H 1.08004 * 120.04944 * 180.24901 * 15 14 13 43 43 H 0.97000 * 119.99979 * 180.02562 * 20 19 17 44 44 H 1.08001 * 120.05592 * 179.97438 * 25 16 15 45 45 H 1.08002 * 119.94491 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0361 -0.7220 1.1788 5 6 3.5561 -0.8272 1.2385 6 7 3.8816 -2.0519 0.5565 7 6 4.9040 -2.8082 1.2920 8 6 4.3044 -1.8125 -0.8502 9 6 3.4498 -0.6978 -1.4946 10 7 2.0426 -0.7322 -1.2075 11 6 1.1957 -1.4056 -2.0111 12 8 0.0247 -1.5168 -1.7034 13 6 1.6899 -2.0081 -3.2651 14 6 3.0489 -2.3154 -3.4036 15 6 3.5099 -2.8713 -4.5597 16 6 2.6164 -3.1371 -5.6160 17 6 3.0890 -3.7120 -6.8149 18 1 3.9486 -4.3656 -6.7984 19 6 2.4424 -3.4347 -8.0279 20 7 1.5584 -2.4749 -8.0924 21 14 2.8450 -4.4375 -9.5516 22 1 1.9402 -5.6128 -9.6240 23 1 2.6610 -3.5958 -10.7611 24 1 4.2539 -4.9013 -9.4808 25 6 1.2496 -2.8273 -5.4716 26 6 0.7979 -2.2716 -4.3117 27 1 -0.3634 -1.0166 0.1503 28 1 -0.3634 0.6385 0.8052 29 1 -0.3634 0.3782 -0.9556 30 1 1.6185 -1.7289 1.1770 31 1 1.6888 -0.2052 2.0735 32 1 3.8907 -0.8720 2.2749 33 1 4.0132 0.0213 0.7294 34 1 5.8556 -2.2793 1.2387 35 1 4.6020 -2.9086 2.3344 36 1 5.0132 -3.7978 0.8483 37 1 4.1852 -2.7325 -1.4224 38 1 5.3528 -1.5147 -0.8643 39 1 3.5771 -0.7547 -2.5757 40 1 3.8412 0.2627 -1.1592 41 1 3.7329 -2.1116 -2.5931 42 1 4.5577 -3.1116 -4.6640 43 1 1.1108 -2.2833 -8.9314 44 1 0.5611 -3.0290 -6.2788 45 1 -0.2495 -2.0333 -4.2002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336130049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:50 Heat of formation + Delta-G solvation = 49.619580 kcal Electronic energy + Delta-G solvation = -25614.001785 eV Core-core repulsion = 22212.490013 eV Total energy + Delta-G solvation = -3401.511773 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.45690 -37.95670 -37.20763 -34.89131 -34.47893 -33.23193 -30.07281 -29.57298 -29.07094 -28.65490 -25.78936 -24.98038 -23.72298 -22.51415 -21.41981 -20.64131 -20.20690 -18.43143 -17.68601 -16.57641 -16.06629 -15.81648 -15.33791 -15.07166 -14.75656 -14.39163 -14.17480 -13.79065 -13.23501 -13.19937 -13.01306 -12.56842 -12.55542 -12.40454 -12.00425 -11.86654 -11.76018 -11.61758 -11.48556 -11.37743 -11.20868 -11.11091 -10.96946 -10.77206 -10.70984 -10.57229 -10.40367 -9.75220 -9.34181 -9.27848 -8.40439 -8.24775 -8.08964 -7.59902 -7.41190 -6.90004 -4.54809 2.31939 2.96179 2.99684 3.02433 3.04881 3.44984 3.80605 3.88599 3.97577 4.59504 4.84861 4.94394 5.00064 5.10456 5.24269 5.31664 5.33492 5.45445 5.55489 5.59180 5.65029 5.80207 5.81413 5.85654 5.93651 5.98360 6.04240 6.06292 6.22135 6.31915 6.33707 6.55536 6.72701 6.86781 6.90533 7.01276 7.09095 7.12534 7.17267 7.24308 7.51142 7.65987 7.85677 7.93144 8.11561 8.25963 8.50031 8.70867 8.82024 9.12371 10.02440 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.023070 B = 0.003932 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.395142 B = 7119.583211 C = 8033.694836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.151 3.849 3 H 0.066 0.934 4 C -0.131 4.131 5 C 0.057 3.943 6 N -0.537 5.537 7 C 0.024 3.976 8 C 0.021 3.979 9 C 0.085 3.915 10 N -0.603 5.603 11 C 0.577 3.423 12 O -0.562 6.562 13 C -0.270 4.270 14 C -0.104 4.104 15 C -0.233 4.233 16 C 0.128 3.872 17 C -0.452 4.452 18 H 0.082 0.918 19 C 0.073 3.927 20 N -0.783 5.783 21 Si 0.914 3.086 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.172 4.172 26 C -0.042 4.042 27 H 0.080 0.920 28 H 0.036 0.964 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.022 0.978 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.119 0.881 40 H 0.057 0.943 41 H 0.140 0.860 42 H 0.095 0.905 43 H 0.284 0.716 44 H 0.120 0.880 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.671 3.914 12.448 14.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.049 3.951 3 H 0.084 0.916 4 C -0.170 4.170 5 C -0.072 4.072 6 N -0.261 5.261 7 C -0.124 4.124 8 C -0.107 4.107 9 C -0.041 4.041 10 N -0.336 5.336 11 C 0.373 3.627 12 O -0.443 6.443 13 C -0.274 4.274 14 C -0.121 4.121 15 C -0.253 4.253 16 C 0.125 3.875 17 C -0.480 4.480 18 H 0.100 0.900 19 C -0.146 4.146 20 N -0.407 5.407 21 Si 0.738 3.262 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.185 1.185 25 C -0.192 4.192 26 C -0.062 4.062 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.067 0.933 39 H 0.136 0.864 40 H 0.075 0.925 41 H 0.157 0.843 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.137 0.863 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.466 3.727 12.422 13.716 hybrid contribution 1.102 0.103 -0.755 1.339 sum 5.567 3.830 11.667 13.483 Atomic orbital electron populations 1.22095 0.92549 1.03376 1.01003 1.20691 0.95886 0.94127 0.84373 0.91620 1.21065 0.95578 1.02736 0.97595 1.21634 0.96282 0.91477 0.97792 1.61851 1.41773 1.20572 1.01919 1.22473 0.92651 0.98740 0.98524 1.23672 0.96782 1.01147 0.89086 1.21821 0.82125 0.96781 1.03347 1.47862 1.06020 1.52632 1.27091 1.18605 0.84803 0.76256 0.82999 1.90652 1.18027 1.61164 1.74478 1.19006 0.94724 1.18032 0.95645 1.21982 0.94818 0.97129 0.98218 1.20776 0.98041 1.10048 0.96405 1.17808 0.91259 0.86782 0.91663 1.19773 1.12219 1.24842 0.91202 0.90012 1.26036 0.93389 0.93961 1.01240 1.69724 1.19619 1.22837 1.28508 0.86214 0.80219 0.80194 0.79597 1.19084 1.20112 1.18461 1.21022 0.95956 1.05425 0.96773 1.20469 0.97228 0.95898 0.92589 0.90134 0.94476 0.91665 0.90022 0.92150 0.91516 0.93427 0.95929 0.91658 0.91410 0.88518 0.93323 0.86415 0.92476 0.84349 0.88650 0.90440 0.86261 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 7.66 37.16 0.28 -1.78 16 2 C 0.15 2.17 3.21 -68.62 -0.22 1.95 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.13 -1.65 4.60 -29.78 -0.14 -1.79 16 5 C 0.06 0.64 5.50 -5.68 -0.03 0.61 16 6 N -0.54 -6.88 4.27 -243.06 -1.04 -7.92 16 7 C 0.02 0.25 9.44 60.07 0.57 0.82 16 8 C 0.02 0.28 5.35 -1.95 -0.01 0.27 16 9 C 0.08 1.24 4.33 -4.74 -0.02 1.22 16 10 N -0.60 -10.29 2.70 -168.76 -0.46 -10.75 16 11 C 0.58 12.30 7.37 -12.42 -0.09 12.21 16 12 O -0.56 -13.03 12.33 5.29 0.07 -12.97 16 13 C -0.27 -6.17 5.69 -104.73 -0.60 -6.77 16 14 C -0.10 -2.18 7.27 -39.61 -0.29 -2.47 16 15 C -0.23 -5.35 9.73 -39.27 -0.38 -5.74 16 16 C 0.13 3.28 5.54 -106.80 -0.59 2.68 16 17 C -0.45 -11.39 9.05 -37.75 -0.34 -11.73 16 18 H 0.08 1.96 7.88 -52.49 -0.41 1.55 16 19 C 0.07 1.76 5.23 -17.31 -0.09 1.67 16 20 N -0.78 -19.49 10.93 55.56 0.61 -18.88 16 21 Si 0.91 17.82 29.58 -169.99 -5.03 12.79 16 22 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 23 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 25 C -0.17 -4.45 8.59 -39.27 -0.34 -4.79 16 26 C -0.04 -1.05 9.52 -39.61 -0.38 -1.42 16 27 H 0.08 1.44 6.55 -51.93 -0.34 1.10 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 1.15 7.02 -51.93 -0.36 0.79 16 30 H 0.08 1.26 7.79 -51.93 -0.40 0.85 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.64 7.44 -51.93 -0.39 0.25 16 33 H 0.05 0.52 6.12 -51.93 -0.32 0.20 16 34 H 0.02 0.21 8.01 -51.93 -0.42 -0.21 16 35 H 0.06 0.60 7.83 -51.93 -0.41 0.19 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.46 6.08 -51.93 -0.32 1.14 16 38 H 0.05 0.55 7.91 -51.93 -0.41 0.14 16 39 H 0.12 1.93 4.44 -51.93 -0.23 1.70 16 40 H 0.06 0.71 6.87 -51.93 -0.36 0.36 16 41 H 0.14 2.42 1.48 -52.54 -0.08 2.34 16 42 H 0.10 2.01 8.06 -52.48 -0.42 1.58 16 43 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 44 H 0.12 3.17 6.29 -52.49 -0.33 2.84 16 45 H 0.10 2.34 7.80 -52.49 -0.41 1.93 16 LS Contribution 337.63 15.07 5.09 5.09 Total: -1.00 -28.29 337.63 -9.85 -38.14 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -6.43 Total: 9.55 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -2.66 Total: -15.06 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.89 Total: -37.55 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.07 Total: -12.97 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.29 -9.85 -38.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336130049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.762 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds