Wall clock time and date at job start Tue Mar 31 2020 09:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.00545 * 2 1 4 4 C 1.47210 * 110.10556 * 121.48720 * 2 1 3 5 5 C 1.52480 * 114.06975 * 177.59209 * 4 2 1 6 6 N 1.43914 * 105.40646 * 269.52330 * 5 4 2 7 7 C 1.46903 * 110.99645 * 223.42517 * 6 5 4 8 8 C 1.48823 * 112.04133 * 98.71096 * 6 5 4 9 9 C 1.54531 * 110.68062 * 320.99332 * 8 6 5 10 10 N 1.43661 * 116.17088 * 318.28206 * 9 8 6 11 11 C 1.34777 * 120.55146 * 269.14438 * 10 9 8 12 12 O 1.21582 * 119.99732 * 174.23111 * 11 10 9 13 13 C 1.47638 * 120.00057 * 354.22142 * 11 10 9 14 14 C 1.40015 * 119.89663 * 23.11291 * 13 11 10 15 15 C 1.36317 * 120.10719 * 180.02562 * 14 13 11 16 16 C 1.40882 * 119.89139 * 359.97313 * 15 14 13 17 17 C 1.41114 * 120.10085 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00269 * 29.37188 * 17 16 15 19 19 C 1.40222 * 119.99978 * 209.37388 * 17 16 15 20 20 N 1.30653 * 119.99967 * 11.88381 * 19 17 16 21 21 Si 1.86801 * 120.00382 * 191.88527 * 19 17 16 22 22 H 1.48499 * 109.46980 * 89.99562 * 21 19 17 23 23 H 1.48494 * 109.47327 * 209.99810 * 21 19 17 24 24 H 1.48497 * 109.46776 * 330.00287 * 21 19 17 25 25 C 1.40887 * 119.79639 * 359.97438 * 16 15 14 26 26 C 1.36315 * 119.88960 * 0.02562 * 25 16 15 27 27 H 1.08998 * 109.47637 * 188.41159 * 1 2 3 28 28 H 1.09002 * 109.47347 * 308.41315 * 1 2 3 29 29 H 1.09005 * 109.47241 * 68.40962 * 1 2 3 30 30 H 1.08998 * 108.66546 * 56.34176 * 4 2 1 31 31 H 1.08998 * 108.37085 * 298.62540 * 4 2 1 32 32 H 1.08997 * 110.25050 * 150.55445 * 5 4 2 33 33 H 1.08998 * 110.24800 * 28.49660 * 5 4 2 34 34 H 1.08996 * 109.47132 * 290.74029 * 7 6 5 35 35 H 1.08992 * 109.47359 * 50.74577 * 7 6 5 36 36 H 1.09003 * 109.47033 * 170.74732 * 7 6 5 37 37 H 1.08995 * 109.22847 * 200.68637 * 8 6 5 38 38 H 1.08997 * 109.23405 * 81.30479 * 8 6 5 39 39 H 1.09003 * 108.14140 * 196.54266 * 9 8 6 40 40 H 1.09001 * 107.98355 * 79.89761 * 9 8 6 41 41 H 1.07994 * 119.94526 * 0.02562 * 14 13 11 42 42 H 1.08004 * 120.04944 * 180.24901 * 15 14 13 43 43 H 0.97000 * 119.99979 * 180.02562 * 20 19 17 44 44 H 1.08001 * 120.05592 * 179.97438 * 25 16 15 45 45 H 1.08002 * 119.94491 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0361 -0.7220 1.1788 5 6 3.5561 -0.8272 1.2385 6 7 3.8816 -2.0519 0.5565 7 6 4.9040 -2.8082 1.2920 8 6 4.3044 -1.8125 -0.8502 9 6 3.4498 -0.6978 -1.4946 10 7 2.0426 -0.7322 -1.2075 11 6 1.1957 -1.4056 -2.0111 12 8 0.0247 -1.5168 -1.7034 13 6 1.6899 -2.0081 -3.2651 14 6 3.0489 -2.3154 -3.4036 15 6 3.5099 -2.8713 -4.5597 16 6 2.6164 -3.1371 -5.6160 17 6 3.0890 -3.7120 -6.8149 18 1 3.9486 -4.3656 -6.7984 19 6 2.4424 -3.4347 -8.0279 20 7 1.5584 -2.4749 -8.0924 21 14 2.8450 -4.4375 -9.5516 22 1 1.9402 -5.6128 -9.6240 23 1 2.6610 -3.5958 -10.7611 24 1 4.2539 -4.9013 -9.4808 25 6 1.2496 -2.8273 -5.4716 26 6 0.7979 -2.2716 -4.3117 27 1 -0.3634 -1.0166 0.1503 28 1 -0.3634 0.6385 0.8052 29 1 -0.3634 0.3782 -0.9556 30 1 1.6185 -1.7289 1.1770 31 1 1.6888 -0.2052 2.0735 32 1 3.8907 -0.8720 2.2749 33 1 4.0132 0.0213 0.7294 34 1 5.8556 -2.2793 1.2387 35 1 4.6020 -2.9086 2.3344 36 1 5.0132 -3.7978 0.8483 37 1 4.1852 -2.7325 -1.4224 38 1 5.3528 -1.5147 -0.8643 39 1 3.5771 -0.7547 -2.5757 40 1 3.8412 0.2627 -1.1592 41 1 3.7329 -2.1116 -2.5931 42 1 4.5577 -3.1116 -4.6640 43 1 1.1108 -2.2833 -8.9314 44 1 0.5611 -3.0290 -6.2788 45 1 -0.2495 -2.0333 -4.2002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336130049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:50 Heat of formation + Delta-G solvation = 33.388450 kcal Electronic energy + Delta-G solvation = -25614.705620 eV Core-core repulsion = 22212.490013 eV Total energy + Delta-G solvation = -3402.215607 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.83305 -39.39496 -38.81695 -36.15759 -36.05255 -34.76549 -31.89484 -31.20875 -30.19397 -29.96777 -27.58366 -25.97676 -24.82295 -24.02790 -23.16676 -22.19844 -21.30661 -19.95832 -19.47116 -17.91707 -17.35440 -17.32430 -16.81468 -16.47414 -15.97625 -15.76875 -15.50058 -15.20181 -14.82909 -14.66229 -14.25957 -14.01662 -13.94732 -13.70722 -13.48428 -13.25671 -13.17768 -13.05209 -12.84084 -12.77306 -12.59727 -12.46275 -12.40024 -12.08191 -12.01984 -11.78969 -11.57594 -11.52062 -11.13897 -10.99537 -10.00727 -9.60035 -9.37715 -9.27567 -9.11414 -8.70450 -6.46421 0.51497 1.14815 1.38449 1.43613 1.52822 2.12257 2.15409 2.19717 2.78890 3.03903 3.67685 3.79374 3.89646 3.97795 4.03503 4.18716 4.28199 4.37881 4.41626 4.44302 4.50497 4.55100 4.69387 4.73801 4.77636 4.82951 4.87950 4.95294 4.97604 5.00781 5.05620 5.07977 5.17720 5.23490 5.30012 5.45821 5.47885 5.63386 5.79772 5.83564 6.00688 6.04009 6.12942 6.24674 6.38051 6.59816 6.70029 6.81823 6.93438 7.49846 8.24726 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.023070 B = 0.003932 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.395142 B = 7119.583211 C = 8033.694836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.147 3.853 3 H 0.098 0.902 4 C -0.125 4.125 5 C 0.060 3.940 6 N -0.561 5.561 7 C 0.026 3.974 8 C 0.025 3.975 9 C 0.076 3.924 10 N -0.596 5.596 11 C 0.571 3.429 12 O -0.591 6.591 13 C -0.281 4.281 14 C -0.090 4.090 15 C -0.244 4.244 16 C 0.100 3.900 17 C -0.482 4.482 18 H 0.088 0.912 19 C 0.032 3.968 20 N -0.817 5.817 21 Si 0.989 3.011 22 H -0.264 1.264 23 H -0.268 1.268 24 H -0.252 1.252 25 C -0.194 4.194 26 C -0.057 4.057 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.035 0.965 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.181 0.819 42 H 0.115 0.885 43 H 0.291 0.709 44 H 0.100 0.900 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.314 4.870 14.343 17.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.047 3.953 3 H 0.115 0.885 4 C -0.164 4.164 5 C -0.068 4.068 6 N -0.286 5.286 7 C -0.122 4.122 8 C -0.103 4.103 9 C -0.048 4.048 10 N -0.327 5.327 11 C 0.365 3.635 12 O -0.475 6.475 13 C -0.285 4.285 14 C -0.107 4.107 15 C -0.263 4.263 16 C 0.097 3.903 17 C -0.511 4.511 18 H 0.106 0.894 19 C -0.184 4.184 20 N -0.442 5.442 21 Si 0.809 3.191 22 H -0.189 1.189 23 H -0.192 1.192 24 H -0.175 1.175 25 C -0.213 4.213 26 C -0.077 4.077 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.197 0.803 42 H 0.133 0.867 43 H 0.102 0.898 44 H 0.118 0.882 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.143 4.705 14.358 16.712 hybrid contribution 0.243 -0.106 -1.175 1.205 sum 7.387 4.599 13.182 15.795 Atomic orbital electron populations 1.21945 0.93838 1.02017 1.00615 1.21003 0.94988 0.95596 0.83729 0.88456 1.20994 0.96922 1.00826 0.97667 1.21676 0.94810 0.91132 0.99184 1.61765 1.43161 1.21834 1.01827 1.22488 0.92807 0.98189 0.98710 1.23511 0.97966 0.99275 0.89502 1.21959 0.80935 0.99425 1.02478 1.47902 1.06669 1.51158 1.27006 1.18451 0.84938 0.76890 0.83184 1.90651 1.19308 1.62400 1.75160 1.19363 0.95401 1.17716 0.96069 1.22468 0.94616 0.94867 0.98726 1.21062 0.98728 1.10097 0.96410 1.18168 0.91457 0.87559 0.93080 1.20070 1.13247 1.25834 0.91917 0.89359 1.26946 0.92781 0.94539 1.04148 1.69796 1.20532 1.24161 1.29739 0.85094 0.80234 0.78343 0.75448 1.18863 1.19238 1.17509 1.20918 0.96321 1.07290 0.96786 1.20536 0.97327 0.96534 0.93291 0.93182 0.90990 0.94599 0.93270 0.89284 0.89135 0.92174 0.94264 0.90493 0.92218 0.90821 0.90298 0.88399 0.88951 0.80324 0.86672 0.89770 0.88165 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.84 7.66 71.98 0.55 -3.29 16 2 C 0.15 3.84 3.21 42.46 0.14 3.98 16 3 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.13 -2.75 4.60 28.62 0.13 -2.62 16 5 C 0.06 1.08 5.50 86.69 0.48 1.55 16 6 N -0.56 -12.50 4.27 -922.90 -3.94 -16.45 16 7 C 0.03 0.44 9.44 127.69 1.21 1.65 16 8 C 0.03 0.59 5.35 86.45 0.46 1.05 16 9 C 0.08 2.02 4.33 87.43 0.38 2.40 16 10 N -0.60 -19.51 2.70 -806.11 -2.18 -21.69 16 11 C 0.57 24.79 7.37 86.73 0.64 25.43 16 12 O -0.59 -28.61 12.33 -3.97 -0.05 -28.66 16 13 C -0.28 -13.28 5.69 -19.93 -0.11 -13.39 16 14 C -0.09 -3.78 7.27 22.25 0.16 -3.62 16 15 C -0.24 -11.32 9.73 22.47 0.22 -11.10 16 16 C 0.10 5.34 5.54 -21.28 -0.12 5.22 16 17 C -0.48 -24.99 9.05 23.46 0.21 -24.78 16 18 H 0.09 4.29 7.88 -2.91 -0.02 4.27 16 19 C 0.03 1.58 5.23 85.35 0.45 2.03 16 20 N -0.82 -42.26 10.93 21.87 0.24 -42.02 16 21 Si 0.99 36.73 29.58 68.60 2.03 38.76 16 22 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 23 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 24 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 25 C -0.19 -10.64 8.59 22.47 0.19 -10.44 16 26 C -0.06 -3.01 9.52 22.25 0.21 -2.80 16 27 H 0.05 1.81 6.55 -2.39 -0.02 1.80 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.03 1.28 7.02 -2.38 -0.02 1.26 16 30 H 0.05 1.43 7.79 -2.39 -0.02 1.41 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.23 7.44 -2.39 -0.02 1.21 16 33 H 0.06 0.95 6.12 -2.39 -0.01 0.94 16 34 H 0.04 0.55 8.01 -2.39 -0.02 0.53 16 35 H 0.08 1.13 7.83 -2.39 -0.02 1.11 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 2.07 6.08 -2.39 -0.01 2.05 16 38 H 0.08 1.40 7.91 -2.39 -0.02 1.38 16 39 H 0.10 3.03 4.44 -2.39 -0.01 3.01 16 40 H 0.09 1.87 6.87 -2.39 -0.02 1.85 16 41 H 0.18 6.02 1.48 -2.96 0.00 6.02 16 42 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 43 H 0.29 13.60 8.29 -92.71 -0.77 12.83 16 44 H 0.10 5.75 6.29 -2.91 -0.02 5.74 16 45 H 0.09 4.59 7.80 -2.91 -0.02 4.57 16 Total: -1.00 -66.10 337.63 2.29 -63.81 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: 1.00 Total: 34.98 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 5.19 Total: -28.73 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -5.88 Total: -80.16 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.05 Total: -28.66 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Total: -66.10 2.29 -63.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336130049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.197 kcal (2) G-P(sol) polarization free energy of solvation -66.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds