Wall clock time and date at job start Tue Mar 31 2020 08:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.45352 * 2 1 4 4 C 1.53034 * 109.46301 * 119.97655 * 2 1 3 5 5 C 1.53117 * 109.27960 * 179.19423 * 4 2 1 6 6 H 1.08997 * 109.52113 * 62.31674 * 5 4 2 7 7 N 1.46503 * 109.52238 * 182.44121 * 5 4 2 8 8 C 1.34775 * 120.00125 * 204.99628 * 7 5 4 9 9 O 1.21549 * 119.99451 * 0.02562 * 8 7 5 10 10 C 1.47878 * 120.00065 * 179.97438 * 8 7 5 11 11 C 1.39918 * 120.02865 * 0.23722 * 10 8 7 12 12 C 1.38323 * 120.35963 * 180.23130 * 11 10 8 13 13 C 1.37758 * 120.41560 * 359.79105 * 12 11 10 14 14 C 1.40751 * 120.03608 * 359.97438 * 13 12 11 15 15 C 1.41439 * 120.17696 * 179.97438 * 14 13 12 16 16 H 1.07996 * 119.99753 * 334.96742 * 15 14 13 17 17 C 1.39935 * 120.00054 * 154.97096 * 15 14 13 18 18 N 1.30828 * 119.99676 * 342.58167 * 17 15 14 19 19 Si 1.86794 * 119.99886 * 162.58383 * 17 15 14 20 20 H 1.48494 * 109.47411 * 90.00065 * 19 17 15 21 21 H 1.48502 * 109.46997 * 209.99886 * 19 17 15 22 22 H 1.48497 * 109.47078 * 329.99749 * 19 17 15 23 23 C 1.39003 * 120.02659 * 180.02562 * 10 8 7 24 24 C 1.53118 * 109.15989 * 302.34627 * 5 4 2 25 25 C 1.53035 * 109.28062 * 57.65759 * 24 5 4 26 26 N 1.46852 * 109.52104 * 300.81723 * 25 24 5 27 27 C 1.46899 * 111.00226 * 185.83896 * 26 25 24 28 28 H 1.08988 * 109.47160 * 300.02553 * 1 2 3 29 29 H 1.09007 * 109.46626 * 60.02425 * 1 2 3 30 30 H 1.09000 * 109.46831 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.50181 * 59.25616 * 4 2 1 32 32 H 1.08997 * 109.50602 * 299.13858 * 4 2 1 33 33 H 0.96999 * 120.00091 * 25.00616 * 7 5 4 34 34 H 1.07996 * 119.81975 * 0.02562 * 11 10 8 35 35 H 1.08005 * 119.79360 * 179.76691 * 12 11 10 36 36 H 1.07998 * 119.98255 * 179.97438 * 13 12 11 37 37 H 0.97004 * 119.99555 * 180.02562 * 18 17 15 38 38 H 1.08004 * 120.19733 * 0.03216 * 23 10 8 39 39 H 1.09003 * 109.50342 * 177.59443 * 24 5 4 40 40 H 1.09002 * 109.50596 * 297.71500 * 24 5 4 41 41 H 1.09003 * 109.46815 * 180.80639 * 25 24 5 42 42 H 1.09000 * 109.45592 * 60.82225 * 25 24 5 43 43 H 1.08996 * 109.47071 * 295.79085 * 27 26 25 44 44 H 1.08997 * 109.47120 * 55.78935 * 27 26 25 45 45 H 1.09002 * 109.46959 * 175.79124 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7209 1.2499 5 6 3.5710 -0.7361 1.2355 6 1 3.9457 0.2869 1.2684 7 7 4.0642 -1.4758 2.4000 8 6 5.2937 -1.2202 2.8894 9 8 5.9930 -0.3757 2.3649 10 6 5.7913 -1.9665 4.0651 11 6 4.9881 -2.9414 4.6669 12 6 5.4449 -3.6401 5.7699 13 6 6.6968 -3.3876 6.2861 14 6 7.5210 -2.4140 5.6911 15 6 8.8067 -2.1519 6.2190 16 1 9.0175 -2.3628 7.2570 17 6 9.8056 -1.6194 5.3963 18 7 9.6816 -1.6779 4.0952 19 14 11.3161 -0.8252 6.1558 20 1 12.3706 -1.8524 6.3503 21 1 11.8226 0.2393 5.2527 22 1 10.9558 -0.2309 7.4681 23 6 7.0590 -1.7030 4.5707 24 6 4.0548 -1.4188 -0.0468 25 6 3.4866 -0.6776 -1.2592 26 7 2.0193 -0.6916 -1.1995 27 6 1.4373 -0.1104 -2.4166 28 1 -0.3633 0.5142 0.8897 29 1 -0.3633 0.5135 -0.8903 30 1 -0.3633 -1.0277 0.0005 31 1 1.6659 -1.7448 1.2574 32 1 1.6895 -0.1983 2.1399 33 1 3.5059 -2.1495 2.8186 34 1 4.0050 -3.1472 4.2701 35 1 4.8158 -4.3881 6.2295 36 1 7.0462 -3.9370 7.1477 37 1 10.3742 -1.3091 3.5250 38 1 7.6835 -0.9533 4.1075 39 1 5.1439 -1.3947 -0.0833 40 1 3.7124 -2.4536 -0.0597 41 1 3.8175 -1.1697 -2.1737 42 1 3.8404 0.3534 -1.2530 43 1 1.7120 0.9423 -2.4837 44 1 1.8164 -0.6411 -3.2899 45 1 0.3517 -0.2010 -2.3793 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336343182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:02 Heat of formation + Delta-G solvation = -43.014386 kcal Electronic energy + Delta-G solvation = -24427.183756 eV Core-core repulsion = 21021.655073 eV Total energy + Delta-G solvation = -3405.528683 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.26626 -40.01331 -38.75005 -36.23138 -35.58533 -33.42821 -33.09248 -31.56115 -31.23452 -28.24590 -27.31973 -26.90360 -24.56282 -23.79115 -22.82775 -22.11553 -21.36229 -20.64038 -19.46841 -18.00937 -17.25794 -16.93806 -16.60177 -16.49143 -16.31385 -15.91813 -15.57443 -15.29875 -15.10042 -14.90974 -14.52482 -14.30256 -14.25111 -13.67286 -13.47749 -13.15884 -13.03033 -12.91527 -12.81538 -12.78317 -12.66147 -12.55281 -12.21173 -12.13466 -11.95620 -11.85548 -11.77988 -11.54584 -11.46343 -11.07044 -10.73339 -10.11736 -9.47138 -9.38350 -9.32137 -8.66866 -6.38602 0.37954 1.00824 1.35469 1.45717 1.51829 2.09541 2.18644 2.21831 2.78674 2.89933 3.64200 3.68971 3.80547 3.91438 4.02586 4.05627 4.28068 4.39438 4.41702 4.46663 4.46921 4.53038 4.60294 4.66031 4.75153 4.85584 4.88653 4.90774 4.96137 5.03529 5.06661 5.08969 5.13719 5.19168 5.22211 5.31091 5.39683 5.50359 5.54939 5.86675 5.92629 6.05004 6.06950 6.13757 6.28662 6.51757 6.69788 6.87614 6.94475 7.32282 8.29954 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.023601 B = 0.003142 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.120109 B = 8908.201256 C = 9714.010267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.082 3.918 3 H 0.032 0.968 4 C -0.108 4.108 5 C 0.144 3.856 6 H 0.055 0.945 7 N -0.708 5.708 8 C 0.561 3.439 9 O -0.590 6.590 10 C -0.140 4.140 11 C -0.196 4.196 12 C -0.096 4.096 13 C -0.217 4.217 14 C 0.066 3.934 15 C -0.498 4.498 16 H 0.084 0.916 17 C 0.028 3.972 18 N -0.826 5.826 19 Si 0.982 3.018 20 H -0.257 1.257 21 H -0.273 1.273 22 H -0.255 1.255 23 C -0.130 4.130 24 C -0.122 4.122 25 C 0.065 3.935 26 N -0.543 5.543 27 C 0.020 3.980 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.413 0.587 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.109 0.891 37 H 0.286 0.714 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.025 0.975 43 H 0.023 0.977 44 H 0.073 0.927 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.479 1.157 -8.982 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.027 4.027 3 H 0.050 0.950 4 C -0.146 4.146 5 C 0.040 3.960 6 H 0.073 0.927 7 N -0.360 5.360 8 C 0.351 3.649 9 O -0.472 6.472 10 C -0.143 4.143 11 C -0.215 4.215 12 C -0.114 4.114 13 C -0.237 4.237 14 C 0.064 3.936 15 C -0.527 4.527 16 H 0.102 0.898 17 C -0.186 4.186 18 N -0.452 5.452 19 Si 0.803 3.197 20 H -0.181 1.181 21 H -0.198 1.198 22 H -0.178 1.178 23 C -0.151 4.151 24 C -0.161 4.161 25 C -0.063 4.063 26 N -0.268 5.268 27 C -0.127 4.127 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.251 0.749 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.127 0.873 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.043 0.957 43 H 0.042 0.958 44 H 0.092 0.908 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.051 1.317 -9.557 19.591 hybrid contribution 1.451 0.999 0.263 1.782 sum -15.600 2.316 -9.294 18.305 Atomic orbital electron populations 1.21868 0.91908 1.03191 1.02806 1.21619 0.97041 0.94673 0.89352 0.94957 1.21876 0.91230 1.03245 0.98281 1.21033 0.95434 0.95027 0.84541 0.92696 1.45809 1.16004 1.42109 1.32040 1.18754 0.81485 0.81436 0.83187 1.90664 1.58076 1.36148 1.62291 1.19800 0.96382 1.00790 0.97344 1.20858 1.00100 1.00610 0.99961 1.20935 0.95315 0.99150 0.95966 1.21425 0.97066 1.01040 1.04142 1.17951 0.93727 0.90263 0.91639 1.19856 0.95577 1.39272 0.98044 0.89771 1.26863 1.03339 0.93767 0.94657 1.69898 1.34873 1.34561 1.05843 0.85198 0.76732 0.78568 0.79224 1.18104 1.19797 1.17831 1.21424 0.94023 1.00616 0.99021 1.21904 0.99233 1.00910 0.94088 1.21961 0.87751 0.98345 0.98275 1.62018 1.06355 1.55354 1.03070 1.22495 1.01439 0.97145 0.91646 0.91135 0.91377 0.91303 0.89147 0.89857 0.74914 0.84494 0.84252 0.87315 0.90384 0.88527 0.93940 0.90195 0.89353 0.95694 0.95839 0.90791 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.77 71.98 0.63 -1.14 16 2 C 0.08 1.47 2.44 44.94 0.11 1.58 16 3 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 4 C -0.11 -2.13 4.85 30.64 0.15 -1.99 16 5 C 0.14 4.07 2.52 45.07 0.11 4.18 16 6 H 0.05 1.87 7.57 -2.39 -0.02 1.85 16 7 N -0.71 -22.83 5.03 -445.00 -2.24 -25.07 16 8 C 0.56 25.13 7.74 86.80 0.67 25.81 16 9 O -0.59 -31.38 15.99 -3.87 -0.06 -31.44 16 10 C -0.14 -6.71 5.87 -20.13 -0.12 -6.82 16 11 C -0.20 -7.70 9.55 22.70 0.22 -7.48 16 12 C -0.10 -3.79 10.01 22.18 0.22 -3.57 16 13 C -0.22 -10.21 9.78 22.77 0.22 -9.98 16 14 C 0.07 3.66 5.57 -21.32 -0.12 3.54 16 15 C -0.50 -27.47 9.05 23.47 0.21 -27.26 16 16 H 0.08 4.36 7.90 -2.91 -0.02 4.34 16 17 C 0.03 1.51 5.14 85.25 0.44 1.95 16 18 N -0.83 -46.85 10.97 21.82 0.24 -46.61 16 19 Si 0.98 40.18 29.59 68.60 2.03 42.21 16 20 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 22 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 23 C -0.13 -7.35 8.23 23.01 0.19 -7.16 16 24 C -0.12 -3.36 5.67 30.65 0.17 -3.19 16 25 C 0.07 1.46 5.46 86.32 0.47 1.93 16 26 N -0.54 -10.19 4.75 -897.15 -4.26 -14.45 16 27 C 0.02 0.29 9.05 127.69 1.16 1.44 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.73 6.32 -2.38 -0.02 0.72 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.09 1.59 8.14 -2.38 -0.02 1.58 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.41 10.72 6.62 -92.71 -0.61 10.10 16 34 H 0.14 4.04 6.38 -2.91 -0.02 4.02 16 35 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 36 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 37 H 0.29 14.95 8.30 -92.71 -0.77 14.18 16 38 H 0.10 6.09 5.77 -2.91 -0.02 6.08 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.09 1.76 8.09 -2.39 -0.02 1.75 16 42 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 45 H 0.09 0.99 6.21 -2.39 -0.01 0.97 16 Total: -1.00 -69.55 358.01 0.82 -68.73 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: 0.37 Total: 34.78 kcal Atomic # 6 Polarization: -32.89 SS G_CDS: 4.74 Total: -28.15 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -6.26 Total: -86.13 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.06 Total: -31.44 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -69.55 0.82 -68.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336343182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.717 kcal (2) G-P(sol) polarization free energy of solvation -69.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds