Wall clock time and date at job start Tue Mar 31 2020 09:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47435 * 2 1 4 4 C 1.50707 * 109.47460 * 239.99864 * 2 1 3 5 5 H 1.07994 * 120.00150 * 273.65782 * 4 2 1 6 6 C 1.37879 * 119.99674 * 93.65193 * 4 2 1 7 7 N 1.31518 * 120.00095 * 182.70523 * 6 4 2 8 8 Si 1.86805 * 120.00186 * 2.70489 * 6 4 2 9 9 H 1.48493 * 109.47010 * 92.29808 * 8 6 4 10 10 H 1.48497 * 109.47312 * 212.30203 * 8 6 4 11 11 H 1.48502 * 109.47066 * 332.30176 * 8 6 4 12 12 N 1.46502 * 109.47234 * 120.00135 * 2 1 3 13 13 C 1.34774 * 119.99996 * 275.00523 * 12 2 1 14 14 O 1.21279 * 119.99854 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99970 * 180.02562 * 13 12 2 16 16 H 1.08999 * 110.34858 * 331.25618 * 15 13 12 17 17 C 1.54600 * 110.30746 * 209.11321 * 15 13 12 18 18 C 1.54930 * 102.92004 * 219.12388 * 17 15 13 19 19 N 1.48533 * 103.23118 * 37.41530 * 18 17 15 20 20 C 1.39669 * 111.00071 * 200.27734 * 19 18 17 21 21 C 1.38913 * 120.07287 * 140.92841 * 20 19 18 22 22 C 1.38102 * 119.92257 * 179.97438 * 21 20 19 23 23 C 1.38280 * 120.07744 * 0.02562 * 22 21 20 24 24 C 1.38293 * 120.15113 * 359.97438 * 23 22 21 25 25 C 1.38098 * 120.07064 * 359.97438 * 24 23 22 26 26 C 1.47898 * 105.81681 * 320.79485 * 19 18 17 27 27 H 1.09000 * 109.91331 * 265.97290 * 26 19 18 28 28 C 1.52995 * 109.91866 * 144.87853 * 26 19 18 29 29 H 1.09002 * 109.47194 * 55.25080 * 1 2 3 30 30 H 1.08999 * 109.47456 * 175.24634 * 1 2 3 31 31 H 1.09000 * 109.47589 * 295.25003 * 1 2 3 32 32 H 0.96999 * 119.99912 * 180.02562 * 7 6 4 33 33 H 0.97002 * 119.99803 * 95.00050 * 12 2 1 34 34 H 1.08996 * 110.72627 * 337.48522 * 17 15 13 35 35 H 1.09007 * 110.71905 * 100.58953 * 17 15 13 36 36 H 1.08996 * 110.66841 * 278.97566 * 18 17 15 37 37 H 1.09006 * 110.66618 * 155.85170 * 18 17 15 38 38 H 1.07999 * 120.03922 * 359.95498 * 21 20 19 39 39 H 1.08003 * 119.95856 * 179.72006 * 22 21 20 40 40 H 1.07998 * 119.92718 * 179.97438 * 23 22 21 41 41 H 1.07999 * 119.95950 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.03491 * 180.02562 * 25 24 23 43 43 H 1.09002 * 109.47158 * 61.42959 * 28 26 19 44 44 H 1.08999 * 109.47220 * 181.42582 * 28 26 19 45 45 H 1.08995 * 109.47136 * 301.43046 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.1561 -1.7832 -1.2219 6 6 2.3339 0.0093 -2.3672 7 7 2.7215 -0.6155 -3.4577 8 14 2.1919 1.8719 -2.3585 9 1 3.5027 2.4665 -1.9935 10 1 1.7928 2.3443 -3.7086 11 1 1.1673 2.2856 -1.3664 12 7 2.0183 -0.6906 1.1962 13 6 2.1469 -0.0184 2.3571 14 8 1.8588 1.1585 2.4115 15 6 2.6498 -0.7286 3.5874 16 1 2.3887 -1.7862 3.5479 17 6 2.0620 -0.0779 4.8606 18 6 3.2555 -0.1087 5.8481 19 7 4.4249 0.1736 4.9768 20 6 5.6112 -0.2536 5.5774 21 6 6.6060 -0.8460 4.8099 22 6 7.7781 -1.2668 5.4069 23 6 7.9619 -1.0994 6.7672 24 6 6.9736 -0.5100 7.5343 25 6 5.7996 -0.0860 6.9435 26 6 4.1749 -0.5591 3.7167 27 1 4.6553 -1.5368 3.7541 28 6 4.7166 0.2424 2.5314 29 1 -0.3634 0.5858 -0.8444 30 1 -0.3634 -1.0241 -0.0852 31 1 -0.3634 0.4384 0.9294 32 1 2.9339 -0.1091 -4.2572 33 1 2.2490 -1.6318 1.1525 34 1 1.7523 0.9480 4.6617 35 1 1.2264 -0.6644 5.2428 36 1 3.3479 -1.0919 6.3094 37 1 3.1461 0.6651 6.6080 38 1 6.4628 -0.9777 3.7476 39 1 8.5500 -1.7316 4.8114 40 1 8.8792 -1.4297 7.2316 41 1 7.1203 -0.3811 8.5965 42 1 5.0284 0.3746 7.5431 43 1 5.7937 0.3698 2.6408 44 1 4.5062 -0.2918 1.6049 45 1 4.2361 1.2204 2.5041 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352574578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:33 Heat of formation + Delta-G solvation = -3.894813 kcal Electronic energy + Delta-G solvation = -25115.023484 eV Core-core repulsion = 21711.191153 eV Total energy + Delta-G solvation = -3403.832331 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.92110 -39.15954 -37.40031 -34.88751 -32.88708 -32.36331 -32.08484 -30.56376 -29.72379 -28.37623 -26.00036 -25.29303 -23.36003 -22.68447 -21.73000 -20.72775 -19.96295 -19.18133 -17.91286 -17.26811 -16.23480 -15.84748 -15.47964 -15.39512 -15.07000 -14.77269 -14.17201 -14.09066 -13.88547 -13.53308 -13.18350 -12.77972 -12.67107 -12.57164 -12.40139 -12.27720 -11.99962 -11.81152 -11.67806 -11.41331 -11.24100 -11.11776 -10.88969 -10.85715 -10.78971 -10.71263 -10.54548 -9.94109 -9.86329 -9.19081 -9.10111 -9.02006 -8.72861 -8.07939 -7.91359 -6.24695 -4.28456 1.29362 1.29749 3.19556 3.25530 3.33616 3.41147 3.50076 3.88261 3.93332 4.31365 4.44783 4.50890 4.83561 4.85386 4.97396 5.01644 5.07571 5.16724 5.22955 5.32216 5.35721 5.38050 5.45635 5.57517 5.61914 5.71290 5.74539 5.89924 6.01342 6.06961 6.13474 6.27407 6.30864 6.33928 6.45265 6.50688 6.59389 6.67190 6.68228 6.85829 6.93647 7.18095 7.21175 7.37464 7.54858 8.12723 8.56377 8.75754 8.98095 9.37568 10.86995 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.021527 B = 0.003729 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.407291 B = 7507.880143 C = 8217.662233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 H 0.051 0.949 4 C -0.530 4.530 5 H 0.078 0.922 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.872 3.128 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.258 1.258 12 N -0.704 5.704 13 C 0.517 3.483 14 O -0.552 6.552 15 C -0.122 4.122 16 H 0.093 0.907 17 C -0.112 4.112 18 C 0.041 3.959 19 N -0.462 5.462 20 C 0.115 3.885 21 C -0.168 4.168 22 C -0.092 4.092 23 C -0.156 4.156 24 C -0.095 4.095 25 C -0.156 4.156 26 C 0.082 3.918 27 H 0.072 0.928 28 C -0.158 4.158 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.028 0.972 32 H 0.267 0.733 33 H 0.392 0.608 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.621 -2.994 20.346 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.128 3.872 3 H 0.069 0.931 4 C -0.568 4.568 5 H 0.096 0.904 6 C -0.123 4.123 7 N -0.526 5.526 8 Si 0.698 3.302 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.182 1.182 12 N -0.352 5.352 13 C 0.302 3.698 14 O -0.431 6.431 15 C -0.144 4.144 16 H 0.112 0.888 17 C -0.151 4.151 18 C -0.084 4.084 19 N -0.176 5.176 20 C 0.015 3.985 21 C -0.188 4.188 22 C -0.110 4.110 23 C -0.176 4.176 24 C -0.114 4.114 25 C -0.177 4.177 26 C -0.025 4.025 27 H 0.090 0.910 28 C -0.216 4.216 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.225 0.775 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.149 0.851 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.421 -1.548 19.993 20.773 hybrid contribution 0.159 -0.250 -0.111 0.316 sum 5.580 -1.798 19.882 20.728 Atomic orbital electron populations 1.22228 0.98779 1.00462 0.99197 1.19135 0.90778 0.94429 0.82824 0.93121 1.21010 1.45370 0.95797 0.94619 0.90388 1.24927 0.93590 0.98547 0.95251 1.69883 1.44436 1.36187 1.02080 0.86924 0.79692 0.85915 0.77666 1.19957 1.21104 1.18185 1.46661 1.64882 1.13782 1.09860 1.20020 0.77824 0.87468 0.84475 1.90637 1.51516 1.15948 1.84991 1.22300 0.95448 1.01026 0.95622 0.88824 1.22529 0.96565 1.03660 0.92296 1.23326 0.88801 1.00539 0.95722 1.61610 1.01064 1.50472 1.04416 1.19202 0.92537 0.93957 0.92766 1.21261 0.94831 1.02079 1.00657 1.21020 0.96713 0.98419 0.94892 1.21025 0.99560 1.02772 0.94205 1.20966 0.93269 0.97594 0.99539 1.20862 0.99218 1.04481 0.93146 1.22425 0.93774 0.96264 0.89998 0.90987 1.22114 1.01094 1.02103 0.96284 0.93018 0.93486 0.95276 0.92278 0.77478 0.88359 0.90384 0.92553 0.89318 0.85094 0.86086 0.86453 0.86213 0.85961 0.92280 0.90533 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.44 37.15 0.35 -2.85 16 2 C 0.23 5.36 2.12 -69.08 -0.15 5.21 16 3 H 0.05 1.30 4.75 -51.93 -0.25 1.05 16 4 C -0.53 -13.94 9.05 -34.44 -0.31 -14.25 16 5 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 6 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 7 N -0.89 -25.92 13.96 55.43 0.77 -25.15 16 8 Si 0.87 21.38 26.85 -169.99 -4.56 16.82 16 9 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.26 -6.25 6.40 56.52 0.36 -5.88 16 12 N -0.70 -13.55 4.63 -54.93 -0.25 -13.80 16 13 C 0.52 9.45 4.74 -10.99 -0.05 9.40 16 14 O -0.55 -12.14 14.59 5.56 0.08 -12.06 16 15 C -0.12 -1.67 3.38 -90.41 -0.31 -1.97 16 16 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 17 C -0.11 -1.38 6.55 -24.87 -0.16 -1.55 16 18 C 0.04 0.45 5.39 -1.90 -0.01 0.44 16 19 N -0.46 -6.10 5.01 -159.73 -0.80 -6.90 16 20 C 0.11 1.43 5.68 -83.79 -0.48 0.95 16 21 C -0.17 -2.01 8.32 -39.38 -0.33 -2.34 16 22 C -0.09 -0.96 10.04 -39.62 -0.40 -1.36 16 23 C -0.16 -1.51 10.04 -39.55 -0.40 -1.91 16 24 C -0.10 -0.92 10.04 -39.61 -0.40 -1.31 16 25 C -0.16 -1.70 9.09 -39.38 -0.36 -2.06 16 26 C 0.08 1.11 2.42 -66.65 -0.16 0.95 16 27 H 0.07 0.88 6.44 -51.93 -0.33 0.55 16 28 C -0.16 -2.51 7.97 37.16 0.30 -2.21 16 29 H 0.05 1.13 7.65 -51.93 -0.40 0.73 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.39 6.66 8.59 -40.82 -0.35 6.31 16 34 H 0.10 1.46 6.89 -51.93 -0.36 1.10 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.55 7.91 -51.93 -0.41 0.14 16 37 H 0.09 0.87 7.59 -51.93 -0.39 0.48 16 38 H 0.13 1.56 4.92 -52.49 -0.26 1.30 16 39 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.12 1.16 6.93 -52.49 -0.36 0.80 16 43 H 0.06 0.85 6.54 -51.93 -0.34 0.51 16 44 H 0.08 1.29 7.28 -51.93 -0.38 0.91 16 45 H 0.08 1.45 6.87 -51.93 -0.36 1.09 16 LS Contribution 350.87 15.07 5.29 5.29 Total: -1.00 -31.11 350.87 -9.18 -40.29 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.75 Total: 8.22 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -2.95 Total: -12.71 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.28 Total: -45.85 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.56 Total: 16.82 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.11 -9.18 -40.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352574578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.393 kcal (2) G-P(sol) polarization free energy of solvation -31.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds