Wall clock time and date at job start Tue Mar 31 2020 08:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.43722 * 2 1 4 4 C 1.54261 * 110.48632 * 122.54315 * 2 1 3 5 5 C 1.53880 * 106.60023 * 142.42077 * 4 2 1 6 6 C 1.54267 * 106.59485 * 0.02562 * 5 4 2 7 7 H 1.08997 * 110.48867 * 95.20203 * 6 5 4 8 8 C 1.53005 * 110.48221 * 217.71297 * 6 5 4 9 9 N 1.46498 * 109.46981 * 291.75533 * 8 6 5 10 10 C 1.34780 * 120.00096 * 180.02562 * 9 8 6 11 11 O 1.21580 * 119.99602 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99927 * 179.97438 * 10 9 8 13 13 C 1.39243 * 119.99525 * 185.68548 * 12 10 9 14 14 C 1.39478 * 119.83801 * 34.66301 * 13 12 10 15 15 C 1.36369 * 120.16876 * 179.97438 * 14 13 12 16 16 C 1.40868 * 119.83172 * 0.02756 * 15 14 13 17 17 C 1.41158 * 120.16298 * 179.72253 * 16 15 14 18 18 H 1.08000 * 119.99965 * 325.72244 * 17 16 15 19 19 C 1.39895 * 119.99921 * 145.72105 * 17 16 15 20 20 N 1.30885 * 119.99781 * 354.49392 * 19 17 16 21 21 Si 1.86800 * 120.00057 * 174.48515 * 19 17 16 22 22 H 1.48502 * 109.46715 * 60.00370 * 21 19 17 23 23 H 1.48504 * 109.47110 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47346 * 300.00550 * 21 19 17 25 25 C 1.40868 * 119.67069 * 359.97438 * 16 15 14 26 26 C 1.36366 * 119.82798 * 359.97438 * 25 16 15 27 27 C 1.54886 * 104.31519 * 336.45325 * 6 5 4 28 28 H 1.08997 * 109.46838 * 298.90854 * 1 2 3 29 29 H 1.08995 * 109.46748 * 58.90975 * 1 2 3 30 30 H 1.08998 * 109.46623 * 178.90682 * 1 2 3 31 31 H 1.08998 * 110.03341 * 23.13951 * 4 2 1 32 32 H 1.09001 * 110.03371 * 261.70468 * 4 2 1 33 33 H 1.08991 * 110.03173 * 240.71779 * 5 4 2 34 34 H 1.08998 * 110.03491 * 119.28162 * 5 4 2 35 35 H 1.09006 * 109.46837 * 171.75834 * 8 6 5 36 36 H 1.08994 * 109.47442 * 51.75680 * 8 6 5 37 37 H 0.96999 * 119.99967 * 0.02562 * 9 8 6 38 38 H 0.96993 * 120.00081 * 5.68779 * 12 10 9 39 39 H 1.07997 * 119.91144 * 0.02586 * 14 13 12 40 40 H 1.08003 * 120.08415 * 180.02562 * 15 14 13 41 41 H 0.96996 * 119.99549 * 180.02562 * 20 19 17 42 42 H 1.07998 * 120.08311 * 179.97438 * 25 16 15 43 43 H 1.08008 * 119.91723 * 180.02562 * 26 25 16 44 44 H 1.08996 * 110.75840 * 156.19720 * 27 6 5 45 45 H 1.09003 * 110.75642 * 279.56824 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0214 0.0000 4 6 2.0699 -0.7773 1.2182 5 6 3.3186 -1.5370 0.7367 6 6 3.4942 -1.1941 -0.7571 7 1 4.1938 -0.3673 -0.8791 8 6 3.9758 -2.4206 -1.5348 9 7 5.3451 -2.7486 -1.1303 10 6 5.9791 -3.7991 -1.6879 11 8 5.4145 -4.4748 -2.5262 12 7 7.2390 -4.1005 -1.3161 13 6 7.9364 -5.1101 -1.9744 14 6 7.7405 -5.3118 -3.3406 15 6 8.4203 -6.2982 -3.9921 16 6 9.3219 -7.1148 -3.2818 17 6 10.0250 -8.1416 -3.9480 18 1 9.5553 -8.6801 -4.7579 19 6 11.3301 -8.4618 -3.5593 20 7 11.9385 -7.7402 -2.6524 21 14 12.2045 -9.9193 -4.3343 22 1 12.3078 -9.7117 -5.8011 23 1 13.5659 -10.0452 -3.7546 24 1 11.4348 -11.1599 -4.0629 25 6 9.5145 -6.9050 -1.9022 26 6 8.8283 -5.9140 -1.2645 27 6 2.0770 -0.7785 -1.2238 28 1 -0.3633 0.4968 0.8996 29 1 -0.3633 0.5307 -0.8800 30 1 -0.3632 -1.0275 -0.0196 31 1 1.3185 -1.4820 1.5744 32 1 2.3390 -0.0835 2.0145 33 1 3.1730 -2.6102 0.8593 34 1 4.1936 -1.2117 1.2994 35 1 3.9543 -2.2048 -2.6031 36 1 3.3216 -3.2659 -1.3217 37 1 5.7954 -2.2097 -0.4613 38 1 7.6599 -3.6143 -0.5900 39 1 7.0492 -4.6847 -3.8838 40 1 8.2678 -6.4529 -5.0501 41 1 12.8435 -7.9621 -2.3832 42 1 10.2038 -7.5274 -1.3510 43 1 8.9752 -5.7516 -0.2069 44 1 2.1327 -0.1341 -2.1011 45 1 1.4640 -1.6567 -1.4265 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355406237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:31 Heat of formation + Delta-G solvation = -34.054625 kcal Electronic energy + Delta-G solvation = -23481.694563 eV Core-core repulsion = 20076.554405 eV Total energy + Delta-G solvation = -3405.140158 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.98323 -38.90114 -37.35746 -34.83202 -34.21430 -32.87402 -31.50210 -29.65997 -29.47661 -28.68241 -26.38729 -24.80051 -23.79103 -21.64522 -20.87970 -20.60902 -19.87153 -19.81181 -17.87182 -17.19151 -16.74593 -16.37434 -15.23097 -15.10172 -14.92636 -14.62325 -13.98592 -13.89001 -13.81290 -13.71573 -13.37167 -12.97561 -12.64785 -12.61529 -12.15834 -12.07401 -11.71420 -11.46532 -11.34407 -11.23824 -11.09526 -11.01218 -10.92461 -10.91248 -10.89870 -10.66317 -10.48486 -10.06220 -9.74491 -9.46528 -9.17467 -8.87395 -8.70869 -7.50373 -6.80492 -6.61556 -4.26130 2.71088 3.07890 3.11417 3.13228 3.15517 3.21051 3.76302 4.01958 4.20690 4.26781 4.38022 4.71898 4.76086 4.85273 4.99277 5.05659 5.12295 5.25511 5.29048 5.38569 5.44676 5.50806 5.66566 5.70697 5.73675 5.77220 5.81905 5.85128 5.95621 6.10380 6.14813 6.22899 6.43539 6.65238 6.80786 6.86455 7.09198 7.21456 7.30903 7.42291 7.67952 7.90567 8.00507 8.12202 8.34604 8.52522 8.67240 8.96438 8.98555 9.15349 10.34561 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.055376 B = 0.002165 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.515982 B =12932.089590 C =13233.411659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.121 4.121 5 C -0.122 4.122 6 C -0.104 4.104 7 H 0.080 0.920 8 C 0.148 3.852 9 N -0.752 5.752 10 C 0.694 3.306 11 O -0.579 6.579 12 N -0.669 5.669 13 C 0.027 3.973 14 C -0.084 4.084 15 C -0.204 4.204 16 C 0.104 3.896 17 C -0.466 4.466 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.813 5.813 21 Si 0.912 3.088 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.266 1.266 25 C -0.138 4.138 26 C -0.122 4.122 27 C -0.112 4.112 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.392 0.608 38 H 0.391 0.609 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.278 0.722 42 H 0.121 0.879 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.629 14.904 8.247 22.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.158 4.158 5 C -0.159 4.159 6 C -0.123 4.123 7 H 0.098 0.902 8 C 0.024 3.976 9 N -0.409 5.409 10 C 0.395 3.605 11 O -0.456 6.456 12 N -0.315 5.315 13 C -0.066 4.066 14 C -0.104 4.104 15 C -0.224 4.224 16 C 0.101 3.899 17 C -0.497 4.497 18 H 0.094 0.906 19 C -0.143 4.143 20 N -0.440 5.440 21 Si 0.737 3.263 22 H -0.192 1.192 23 H -0.205 1.205 24 H -0.191 1.191 25 C -0.158 4.158 26 C -0.142 4.142 27 C -0.150 4.150 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.225 0.775 38 H 0.224 0.776 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.138 0.862 43 H 0.108 0.892 44 H 0.087 0.913 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.943 14.302 7.575 22.028 hybrid contribution 0.982 -0.050 0.434 1.075 sum -13.961 14.252 8.009 21.498 Atomic orbital electron populations 1.21804 0.94989 1.01911 1.01519 1.21978 0.95491 0.99225 0.94910 0.90914 1.22216 0.97331 0.98800 0.97473 1.22232 0.97873 1.00797 0.95028 1.22249 0.97578 0.97377 0.95132 0.90192 1.21164 0.81760 0.96075 0.98604 1.45107 1.16388 1.32627 1.46772 1.16017 0.81298 0.81075 0.82153 1.90919 1.66401 1.52419 1.35898 1.42146 1.12642 1.38448 1.38283 1.17014 1.02077 0.95905 0.91565 1.20275 0.98911 0.99014 0.92204 1.20784 1.04351 0.99043 0.98209 1.17664 0.89816 0.91030 0.91383 1.19438 0.98011 1.16073 1.16128 0.90649 1.25842 0.97792 0.96501 0.94163 1.69784 1.12949 1.35352 1.25952 0.86312 0.78253 0.81685 0.80036 1.19165 1.20498 1.19051 1.20912 1.01156 0.99005 0.94693 1.20247 0.99718 0.97027 0.97232 1.22570 0.94822 1.00092 0.97484 0.92806 0.92693 0.92518 0.91718 0.92050 0.91305 0.91879 0.91841 0.91766 0.77546 0.77590 0.88032 0.88613 0.91145 0.86151 0.89155 0.91263 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.13 37.16 0.34 -0.51 16 2 C -0.10 -0.63 3.45 -88.90 -0.31 -0.94 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.12 -0.81 6.37 -25.61 -0.16 -0.97 16 5 C -0.12 -0.91 6.14 -25.61 -0.16 -1.07 16 6 C -0.10 -0.83 2.90 -88.96 -0.26 -1.09 16 7 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 8 C 0.15 1.67 4.99 -4.04 -0.02 1.65 16 9 N -0.75 -9.52 5.42 -65.23 -0.35 -9.87 16 10 C 0.69 12.56 8.27 -86.92 -0.72 11.84 16 11 O -0.58 -13.12 14.10 5.30 0.07 -13.04 16 12 N -0.67 -12.10 5.31 -14.10 -0.07 -12.18 16 13 C 0.03 0.62 6.26 -83.57 -0.52 0.09 16 14 C -0.08 -2.07 8.57 -39.79 -0.34 -2.41 16 15 C -0.20 -5.30 9.74 -39.26 -0.38 -5.68 16 16 C 0.10 2.83 5.50 -106.80 -0.59 2.25 16 17 C -0.47 -12.65 9.02 -37.85 -0.34 -12.99 16 18 H 0.08 1.98 7.85 -52.49 -0.41 1.56 16 19 C 0.07 1.85 5.31 -17.34 -0.09 1.76 16 20 N -0.81 -21.35 10.97 55.55 0.61 -20.74 16 21 Si 0.91 19.22 29.56 -169.99 -5.03 14.20 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 C -0.14 -3.59 8.57 -39.26 -0.34 -3.93 16 26 C -0.12 -2.83 9.90 -39.79 -0.39 -3.22 16 27 C -0.11 -0.80 5.78 -24.67 -0.14 -0.95 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.44 7.84 -51.93 -0.41 0.03 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.60 7.74 -51.93 -0.40 0.19 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.80 8.01 -51.93 -0.42 0.39 16 37 H 0.39 3.75 8.40 -40.82 -0.34 3.41 16 38 H 0.39 5.55 8.83 -40.82 -0.36 5.19 16 39 H 0.10 2.49 6.50 -52.49 -0.34 2.15 16 40 H 0.10 2.36 8.06 -52.48 -0.42 1.94 16 41 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 42 H 0.12 3.22 6.47 -52.49 -0.34 2.88 16 43 H 0.09 1.83 8.06 -52.48 -0.42 1.40 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.56 7.98 -51.93 -0.41 0.14 16 LS Contribution 363.89 15.07 5.48 5.48 Total: -1.00 -31.13 363.89 -10.93 -42.06 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -7.22 Total: 10.26 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -4.43 Total: -16.17 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.18 Total: -42.79 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.07 Total: -13.04 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.13 -10.93 -42.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355406237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.010 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds