Wall clock time and date at job start Tue Mar 31 2020 08:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.40456 * 2 1 4 4 C 1.51220 * 109.62824 * 239.94959 * 2 1 3 5 5 C 1.38833 * 117.78334 * 70.93817 * 4 2 1 6 6 C 1.37957 * 120.50991 * 181.34783 * 5 4 2 7 7 C 1.38266 * 119.71283 * 359.95894 * 6 5 4 8 8 C 1.37908 * 119.83064 * 359.77725 * 7 6 5 9 9 C 1.37673 * 122.36405 * 251.84843 * 4 2 1 10 10 C 1.50598 * 122.85769 * 358.34070 * 9 4 2 11 11 C 1.52792 * 110.85492 * 20.17231 * 10 9 4 12 12 N 1.46684 * 109.43757 * 119.89436 * 2 1 3 13 13 C 1.34777 * 121.33707 * 255.66896 * 12 2 1 14 14 O 1.21283 * 119.99750 * 359.71410 * 13 12 2 15 15 C 1.50702 * 119.99928 * 179.97438 * 13 12 2 16 16 H 1.08995 * 109.47357 * 39.71838 * 15 13 12 17 17 N 1.46895 * 109.46992 * 159.72213 * 15 13 12 18 18 C 1.52995 * 109.46732 * 279.72068 * 15 13 12 19 19 C 1.53009 * 109.47136 * 174.99999 * 18 15 13 20 20 C 1.50698 * 109.47293 * 179.97438 * 19 18 15 21 21 H 1.08004 * 119.99938 * 0.02562 * 20 19 18 22 22 C 1.37874 * 119.99700 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99663 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00355 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47065 * 89.99344 * 24 22 20 26 26 H 1.48498 * 109.47102 * 209.99564 * 24 22 20 27 27 H 1.48506 * 109.46906 * 329.99649 * 24 22 20 28 28 H 1.09002 * 109.47368 * 300.10991 * 1 2 3 29 29 H 1.09003 * 109.47221 * 60.10146 * 1 2 3 30 30 H 1.09000 * 109.47212 * 180.10409 * 1 2 3 31 31 H 1.08007 * 119.74655 * 1.35344 * 5 4 2 32 32 H 1.07993 * 120.14437 * 179.97438 * 6 5 4 33 33 H 1.08000 * 120.08607 * 179.78931 * 7 6 5 34 34 H 1.07990 * 119.71113 * 180.08496 * 8 7 6 35 35 H 1.08999 * 109.20181 * 259.82309 * 10 9 4 36 36 H 1.08994 * 109.16664 * 140.50442 * 10 9 4 37 37 H 1.09005 * 109.77174 * 192.90365 * 11 10 9 38 38 H 1.08999 * 109.76965 * 72.11108 * 11 10 9 39 39 H 1.00898 * 111.00474 * 296.04502 * 17 15 13 40 40 H 1.00901 * 111.00088 * 60.00223 * 17 15 13 41 41 H 1.08995 * 109.47790 * 294.99945 * 18 15 13 42 42 H 1.09001 * 109.47648 * 55.00468 * 18 15 13 43 43 H 1.09003 * 109.46899 * 300.00304 * 19 18 15 44 44 H 1.09001 * 109.46469 * 59.99747 * 19 18 15 45 45 H 0.97006 * 119.99850 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8921 1.0281 0.0000 4 6 2.0380 -0.7132 -1.2329 5 6 1.8775 -0.0811 -2.4585 6 6 2.2952 -0.6930 -3.6222 7 6 2.8788 -1.9453 -3.5667 8 6 3.0437 -2.5719 -2.3493 9 6 2.6268 -1.9564 -1.1750 10 6 2.8488 -2.6959 0.1179 11 6 1.9320 -2.1591 1.2160 12 7 2.0181 -0.6894 1.1992 13 6 2.5201 -0.0046 2.2459 14 8 2.5797 1.2061 2.2061 15 6 3.0127 -0.7437 3.4634 16 1 3.5407 -1.6451 3.1523 17 7 3.9248 0.1201 4.2247 18 6 1.8215 -1.1284 4.3430 19 6 2.3076 -1.9854 5.5136 20 6 1.1344 -2.3639 6.3804 21 1 0.1412 -2.0272 6.1220 22 6 1.3288 -3.1407 7.5028 23 7 0.3049 -3.4706 8.2595 24 14 3.0464 -3.7235 7.9494 25 1 3.6944 -2.7222 8.8341 26 1 2.9587 -5.0262 8.6569 27 1 3.8515 -3.8854 6.7120 28 1 -0.3634 0.5155 0.8890 29 1 -0.3634 0.5123 -0.8909 30 1 -0.3634 -1.0277 0.0019 31 1 1.4223 0.8974 -2.5012 32 1 2.1671 -0.1961 -4.5724 33 1 3.2049 -2.4314 -4.4743 34 1 3.5009 -3.5493 -2.3080 35 1 3.8871 -2.5744 0.4267 36 1 2.6422 -3.7550 -0.0356 37 1 2.2575 -2.5366 2.1854 38 1 0.9053 -2.4706 1.0241 39 1 4.7514 0.3357 3.6877 40 1 3.4585 0.9631 4.5247 41 1 1.3463 -0.2256 4.7265 42 1 1.1016 -1.6951 3.7524 43 1 2.7828 -2.8884 5.1302 44 1 3.0275 -1.4188 6.1043 45 1 0.4417 -4.0168 9.0493 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424137662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:16 Heat of formation + Delta-G solvation = -20.905134 kcal Electronic energy + Delta-G solvation = -24978.856560 eV Core-core repulsion = 21574.286606 eV Total energy + Delta-G solvation = -3404.569954 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.89234 -39.29396 -36.50683 -35.49268 -33.67916 -32.75609 -31.95460 -30.49771 -30.00233 -28.41765 -26.84672 -24.55461 -23.93834 -23.04738 -22.15311 -20.75642 -19.96808 -18.49371 -17.49968 -17.03073 -16.66486 -15.96845 -15.75158 -15.38684 -15.12620 -14.83629 -14.36960 -14.16974 -13.97321 -13.75328 -13.48271 -13.29212 -13.13569 -12.69858 -12.53713 -12.40227 -12.26166 -12.12714 -11.81141 -11.77641 -11.65422 -11.08647 -10.96734 -10.89352 -10.87553 -10.29558 -9.99252 -9.71928 -9.59341 -9.12261 -9.06392 -8.83442 -8.74032 -8.51597 -8.39136 -5.99924 -3.97611 1.09880 1.11698 2.67324 2.90025 3.37056 3.43695 3.48070 3.48562 4.29937 4.42030 4.50684 4.61802 4.67346 4.75627 4.84886 4.88485 5.03367 5.07413 5.11919 5.21947 5.25582 5.32975 5.36406 5.42370 5.46109 5.59530 5.65393 5.68856 5.72852 5.78527 5.85595 6.05287 6.15436 6.24965 6.27061 6.32093 6.44131 6.53968 6.74040 6.85758 7.23436 7.36868 7.42024 7.55972 7.65706 7.85694 8.19021 8.57497 9.04839 9.63061 11.13559 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.021935 B = 0.003470 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.179459 B = 8066.167972 C = 8394.702961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.176 3.824 3 H 0.104 0.896 4 C -0.084 4.084 5 C -0.112 4.112 6 C -0.123 4.123 7 C -0.121 4.121 8 C -0.120 4.120 9 C -0.067 4.067 10 C -0.100 4.100 11 C 0.101 3.899 12 N -0.606 5.606 13 C 0.491 3.509 14 O -0.552 6.552 15 C 0.075 3.925 16 H 0.098 0.902 17 N -0.811 5.811 18 C -0.089 4.089 19 C -0.004 4.004 20 C -0.521 4.521 21 H 0.069 0.931 22 C 0.066 3.934 23 N -0.906 5.906 24 Si 0.882 3.118 25 H -0.277 1.277 26 H -0.291 1.291 27 H -0.264 1.264 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.335 0.665 40 H 0.350 0.650 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.012 0.988 44 H 0.029 0.971 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.169 2.886 -24.300 25.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.072 3.928 3 H 0.121 0.879 4 C -0.085 4.085 5 C -0.130 4.130 6 C -0.141 4.141 7 C -0.139 4.139 8 C -0.138 4.138 9 C -0.067 4.067 10 C -0.137 4.137 11 C -0.022 4.022 12 N -0.340 5.340 13 C 0.279 3.721 14 O -0.429 6.429 15 C -0.041 4.041 16 H 0.116 0.884 17 N -0.339 5.339 18 C -0.127 4.127 19 C -0.041 4.041 20 C -0.559 4.559 21 H 0.087 0.913 22 C -0.135 4.135 23 N -0.546 5.546 24 Si 0.710 3.290 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.189 1.189 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.098 0.902 39 H 0.147 0.853 40 H 0.164 0.836 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.031 0.969 44 H 0.048 0.952 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.209 2.841 -23.584 24.319 hybrid contribution 0.596 0.259 -0.664 0.929 sum 5.806 3.099 -24.248 25.126 Atomic orbital electron populations 1.22118 0.93825 1.02747 1.02636 1.19974 0.94231 0.96861 0.81722 0.87864 1.19883 0.99238 0.94625 0.94743 1.21042 1.00225 0.99995 0.91767 1.21047 0.99383 0.95636 0.98063 1.21068 0.99625 0.95515 0.97684 1.21189 1.00471 1.00126 0.92041 1.19521 0.98137 0.93946 0.95126 1.20886 1.01045 0.99701 0.92108 1.21888 1.00590 0.79391 1.00363 1.48252 1.62273 1.07219 1.16234 1.22602 0.76190 0.88551 0.84765 1.90642 1.56660 1.14321 1.81309 1.21882 0.96699 0.96198 0.89278 0.88399 1.59054 1.08742 1.23625 1.42445 1.21506 0.93389 1.00801 0.96993 1.19483 0.97222 0.94227 0.93173 1.21172 0.94546 1.31827 1.08344 0.91301 1.25015 0.96743 0.95723 0.96025 1.69929 1.30371 1.38248 1.16008 0.86739 0.85311 0.77990 0.78974 1.20293 1.21723 1.18886 0.91543 0.91499 0.92015 0.86010 0.86032 0.86122 0.86022 0.90023 0.89240 0.87722 0.90234 0.85334 0.83597 0.92175 0.92073 0.96945 0.95228 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.26 37.16 0.34 -1.32 16 2 C 0.18 2.12 2.81 -68.73 -0.19 1.92 16 3 H 0.10 1.39 7.17 -51.93 -0.37 1.02 16 4 C -0.08 -0.92 5.19 -104.35 -0.54 -1.46 16 5 C -0.11 -1.07 9.28 -39.46 -0.37 -1.44 16 6 C -0.12 -1.05 10.05 -39.67 -0.40 -1.45 16 7 C -0.12 -1.02 10.04 -39.69 -0.40 -1.41 16 8 C -0.12 -1.09 9.59 -39.43 -0.38 -1.47 16 9 C -0.07 -0.69 5.76 -104.60 -0.60 -1.30 16 10 C -0.10 -0.94 5.87 -28.04 -0.16 -1.10 16 11 C 0.10 1.11 5.62 -3.75 -0.02 1.09 16 12 N -0.61 -7.92 2.58 -166.54 -0.43 -8.35 16 13 C 0.49 7.66 6.96 -10.98 -0.08 7.58 16 14 O -0.55 -10.03 15.78 5.55 0.09 -9.94 16 15 C 0.08 1.19 2.29 -68.87 -0.16 1.03 16 16 H 0.10 1.42 6.78 -51.93 -0.35 1.06 16 17 N -0.81 -12.77 8.44 -5.66 -0.05 -12.82 16 18 C -0.09 -1.69 4.48 -26.73 -0.12 -1.81 16 19 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 20 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 21 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 22 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 23 N -0.91 -27.98 13.96 55.43 0.77 -27.21 16 24 Si 0.88 21.82 27.47 -169.99 -4.67 17.16 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.60 7.93 -51.93 -0.41 0.19 16 30 H 0.06 0.65 7.34 -51.93 -0.38 0.27 16 31 H 0.12 0.98 8.05 -52.48 -0.42 0.56 16 32 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 33 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.12 0.88 8.05 -52.49 -0.42 0.45 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.10 1.20 5.03 -51.93 -0.26 0.94 16 38 H 0.08 0.83 7.33 -51.93 -0.38 0.45 16 39 H 0.33 4.59 9.06 -39.29 -0.36 4.23 16 40 H 0.35 5.65 8.58 -39.29 -0.34 5.32 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.11 7.07 -51.93 -0.37 0.75 16 43 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 44 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 356.97 15.07 5.38 5.38 Total: -1.00 -33.03 356.97 -9.45 -42.48 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.93 Total: 7.83 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -3.61 Total: -14.53 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.30 Total: -48.38 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.03 -9.45 -42.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424137662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.578 kcal (2) G-P(sol) polarization free energy of solvation -33.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds