Wall clock time and date at job start Tue Mar 31 2020 08:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.01970 * 2 1 4 4 C 1.54262 * 110.03682 * 238.60437 * 2 1 3 5 5 C 1.54886 * 104.20020 * 217.05690 * 4 2 1 6 6 C 1.54897 * 102.74420 * 37.94255 * 5 4 2 7 7 H 1.09003 * 110.48679 * 80.87076 * 6 5 4 8 8 C 1.53001 * 110.48166 * 203.38047 * 6 5 4 9 9 N 1.46499 * 109.47186 * 291.75753 * 8 6 5 10 10 C 1.34782 * 120.00024 * 180.02562 * 9 8 6 11 11 O 1.21581 * 119.99798 * 359.71915 * 10 9 8 12 12 N 1.34780 * 119.99564 * 180.02562 * 10 9 8 13 13 C 1.39958 * 119.99500 * 174.57516 * 12 10 9 14 14 C 1.39294 * 119.94524 * 325.52910 * 13 12 10 15 15 C 1.38488 * 120.42696 * 179.72421 * 14 13 12 16 16 C 1.37679 * 120.31945 * 0.55580 * 15 14 13 17 17 C 1.40739 * 119.88865 * 359.72203 * 16 15 14 18 18 C 1.41405 * 120.21691 * 179.97438 * 17 16 15 19 19 H 1.08008 * 119.99643 * 25.18300 * 18 17 16 20 20 C 1.39927 * 120.00681 * 205.18045 * 18 17 16 21 21 N 1.30836 * 119.99781 * 16.77962 * 20 18 17 22 22 Si 1.86796 * 120.00412 * 196.78439 * 20 18 17 23 23 H 1.48500 * 109.47213 * 89.99374 * 22 20 18 24 24 H 1.48497 * 109.47207 * 209.99928 * 22 20 18 25 25 H 1.48499 * 109.46811 * 329.99784 * 22 20 18 26 26 C 1.38230 * 119.95088 * 145.81022 * 13 12 10 27 27 C 1.54092 * 109.96622 * 121.44656 * 2 1 3 28 28 H 1.09002 * 109.47198 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47546 * 299.94149 * 1 2 3 30 30 H 1.09003 * 109.46749 * 59.94470 * 1 2 3 31 31 H 1.09003 * 110.48445 * 98.37450 * 4 2 1 32 32 H 1.09005 * 110.48419 * 335.73793 * 4 2 1 33 33 H 1.08994 * 110.75708 * 279.63074 * 5 4 2 34 34 H 1.08997 * 110.91458 * 156.32688 * 5 4 2 35 35 H 1.09004 * 109.46891 * 171.75952 * 8 6 5 36 36 H 1.08995 * 109.47537 * 51.75675 * 8 6 5 37 37 H 0.97002 * 119.99979 * 359.97438 * 9 8 6 38 38 H 0.96992 * 120.00599 * 354.56644 * 12 10 9 39 39 H 1.07996 * 119.78439 * 0.02562 * 14 13 12 40 40 H 1.08002 * 119.84166 * 180.28079 * 15 14 13 41 41 H 1.08008 * 120.05759 * 179.74460 * 16 15 14 42 42 H 0.96997 * 119.99652 * 180.02562 * 21 20 18 43 43 H 1.08006 * 120.15407 * 0.02562 * 26 13 12 44 44 H 1.08996 * 110.16062 * 0.14473 * 27 2 1 45 45 H 1.08998 * 110.00287 * 238.65055 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7550 -1.2371 5 6 3.3144 -1.4994 -0.7199 6 6 2.8890 -1.9398 0.7029 7 1 2.2812 -2.8435 0.6568 8 6 4.1195 -2.1679 1.5831 9 7 4.8526 -3.3418 1.1028 10 6 5.9788 -3.7360 1.7298 11 8 6.3890 -3.1142 2.6907 12 7 6.6535 -4.8157 1.2876 13 6 7.8812 -5.1586 1.8654 14 6 8.7441 -4.1592 2.3091 15 6 9.9589 -4.4874 2.8875 16 6 10.3319 -5.8060 3.0201 17 6 9.4729 -6.8264 2.5712 18 6 9.8493 -8.1830 2.7034 19 1 10.5500 -8.4766 3.4711 20 6 9.3139 -9.1451 1.8398 21 7 8.7385 -8.7752 0.7245 22 14 9.4207 -10.9575 2.2792 23 1 8.2195 -11.3493 3.0595 24 1 9.4882 -11.7654 1.0351 25 1 10.6396 -11.1986 3.0926 26 6 8.2380 -6.4882 1.9897 27 6 2.0562 -0.7556 1.2356 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5129 0.8904 30 1 -0.3633 0.5147 -0.8895 31 1 2.3289 -0.0528 -2.0257 32 1 1.3146 -1.4660 -1.5966 33 1 4.1713 -0.8272 -0.6762 34 1 3.5367 -2.3662 -1.3422 35 1 3.8037 -2.3330 2.6132 36 1 4.7664 -1.2918 1.5374 37 1 4.5272 -3.8358 0.3341 38 1 6.2882 -5.3551 0.5690 39 1 8.4620 -3.1219 2.2057 40 1 10.6187 -3.7050 3.2324 41 1 11.2821 -6.0570 3.4681 42 1 8.3671 -9.4422 0.1261 43 1 7.5717 -7.2636 1.6415 44 1 1.2228 -1.1243 1.8335 45 1 2.6843 -0.0972 1.8357 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455902228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:55 Heat of formation + Delta-G solvation = -52.737777 kcal Electronic energy + Delta-G solvation = -23731.578251 eV Core-core repulsion = 20325.627930 eV Total energy + Delta-G solvation = -3405.950321 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.44901 -39.76990 -38.99375 -36.13771 -35.69393 -35.05148 -32.35553 -31.42137 -30.45679 -29.73161 -27.17235 -26.85722 -24.78757 -23.16999 -22.86204 -21.62218 -21.26322 -20.43116 -19.40032 -19.12253 -17.83731 -17.16918 -16.64145 -16.45387 -16.33744 -15.99130 -15.74576 -15.28658 -14.88191 -14.61267 -14.49094 -14.28643 -14.16747 -13.90724 -13.51240 -13.38255 -13.05407 -12.87326 -12.81414 -12.57415 -12.33062 -12.00141 -11.84038 -11.73057 -11.62121 -11.58420 -11.55764 -11.50046 -11.27109 -11.22388 -11.04531 -10.75977 -10.10203 -9.30926 -8.80683 -8.50848 -6.33384 0.91052 1.07359 1.41313 1.53554 1.54179 1.72707 2.17603 2.24023 2.79006 3.29700 3.59739 3.68662 3.75042 3.78650 4.21243 4.33446 4.43589 4.46428 4.59196 4.61071 4.68740 4.75827 4.77670 4.79748 4.87096 4.88892 5.00340 5.09101 5.13120 5.17334 5.17959 5.20893 5.22616 5.35254 5.36574 5.38346 5.42032 5.54422 5.60850 5.77992 5.83648 6.02109 6.11146 6.19822 6.40502 6.69985 6.95876 6.99385 7.11059 7.58707 8.36440 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.024030 B = 0.002602 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.944159 B =10757.135029 C =11513.236169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.070 0.930 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.094 4.094 7 H 0.091 0.909 8 C 0.148 3.852 9 N -0.726 5.726 10 C 0.696 3.304 11 O -0.618 6.618 12 N -0.674 5.674 13 C 0.171 3.829 14 C -0.240 4.240 15 C -0.085 4.085 16 C -0.250 4.250 17 C 0.092 3.908 18 C -0.498 4.498 19 H 0.076 0.924 20 C 0.037 3.963 21 N -0.822 5.822 22 Si 0.982 3.018 23 H -0.264 1.264 24 H -0.266 1.266 25 H -0.261 1.261 26 C -0.204 4.204 27 C -0.113 4.113 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.410 0.590 38 H 0.413 0.587 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.288 0.712 43 H 0.114 0.886 44 H 0.074 0.926 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.952 10.773 -6.567 21.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.088 0.912 4 C -0.154 4.154 5 C -0.159 4.159 6 C -0.113 4.113 7 H 0.109 0.891 8 C 0.024 3.976 9 N -0.383 5.383 10 C 0.397 3.603 11 O -0.498 6.498 12 N -0.322 5.322 13 C 0.077 3.923 14 C -0.261 4.261 15 C -0.103 4.103 16 C -0.270 4.270 17 C 0.089 3.911 18 C -0.527 4.527 19 H 0.094 0.906 20 C -0.178 4.178 21 N -0.448 5.448 22 Si 0.803 3.197 23 H -0.189 1.189 24 H -0.191 1.191 25 H -0.185 1.185 26 C -0.226 4.226 27 C -0.151 4.151 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.247 0.753 38 H 0.249 0.751 39 H 0.118 0.882 40 H 0.137 0.863 41 H 0.120 0.880 42 H 0.099 0.901 43 H 0.132 0.868 44 H 0.093 0.907 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.758 11.311 -5.950 21.076 hybrid contribution 0.055 -1.138 -0.408 1.210 sum -16.704 10.174 -6.358 20.565 Atomic orbital electron populations 1.21873 0.94347 1.01978 1.01861 1.21778 0.96198 0.99276 0.94295 0.91160 1.22428 0.96819 0.99037 0.97159 1.22589 0.98032 1.00282 0.95024 1.22188 0.94297 0.99941 0.94825 0.89083 1.21321 0.92325 0.86194 0.97747 1.44963 1.25438 1.32892 1.34990 1.16156 0.80936 0.80778 0.82435 1.90891 1.70399 1.58108 1.30422 1.42465 1.20726 1.29246 1.39725 1.17436 0.84479 0.93045 0.97376 1.20478 0.96362 0.97184 1.12118 1.20725 0.95659 0.95831 0.98123 1.21197 1.00391 0.92832 1.12550 1.17768 0.90309 0.93710 0.89294 1.19777 1.25041 0.92298 1.15594 0.90624 1.26699 0.92194 1.05841 0.93023 1.69855 1.28782 1.38214 1.07903 0.85206 0.79802 0.75823 0.78877 1.18883 1.19075 1.18481 1.20986 0.98890 0.92648 1.10092 1.22252 0.99132 0.95922 0.97799 0.92447 0.92585 0.92344 0.91378 0.90838 0.92183 0.90886 0.92876 0.92815 0.75326 0.75101 0.88152 0.86332 0.88046 0.90097 0.86786 0.90719 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.84 71.98 0.64 -0.81 16 2 C -0.10 -1.16 3.51 -10.00 -0.04 -1.19 16 3 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -1.38 6.36 31.67 0.20 -1.18 16 5 C -0.12 -1.72 6.10 31.89 0.19 -1.53 16 6 C -0.09 -1.42 2.90 -9.72 -0.03 -1.44 16 7 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 8 C 0.15 3.35 4.96 86.38 0.43 3.77 16 9 N -0.73 -18.64 5.42 -478.53 -2.60 -21.23 16 10 C 0.70 26.11 8.29 179.05 1.48 27.59 16 11 O -0.62 -28.71 14.09 -3.97 -0.06 -28.76 16 12 N -0.67 -26.28 5.34 -317.32 -1.69 -27.98 16 13 C 0.17 8.33 6.25 38.10 0.24 8.57 16 14 C -0.24 -11.95 8.66 22.58 0.20 -11.76 16 15 C -0.08 -4.10 10.02 22.20 0.22 -3.88 16 16 C -0.25 -12.93 9.79 22.75 0.22 -12.70 16 17 C 0.09 5.11 5.57 -21.31 -0.12 4.99 16 18 C -0.50 -27.04 9.05 23.46 0.21 -26.83 16 19 H 0.08 3.99 7.90 -2.91 -0.02 3.97 16 20 C 0.04 1.86 5.16 85.25 0.44 2.30 16 21 N -0.82 -41.60 10.94 21.82 0.24 -41.36 16 22 Si 0.98 37.86 29.59 68.60 2.03 39.89 16 23 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 24 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 26 C -0.20 -10.83 8.60 22.85 0.20 -10.63 16 27 C -0.11 -1.54 6.04 31.39 0.19 -1.35 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.78 7.85 -2.38 -0.02 0.76 16 33 H 0.06 1.00 8.00 -2.39 -0.02 0.98 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.05 1.36 8.06 -2.39 -0.02 1.34 16 37 H 0.41 7.81 8.40 -92.71 -0.78 7.03 16 38 H 0.41 13.30 8.83 -92.71 -0.82 12.48 16 39 H 0.10 4.99 6.47 -2.91 -0.02 4.97 16 40 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 41 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 42 H 0.29 13.06 8.30 -92.71 -0.77 12.29 16 43 H 0.11 6.10 6.17 -2.91 -0.02 6.09 16 44 H 0.07 0.94 7.68 -2.39 -0.02 0.92 16 45 H 0.06 0.94 7.84 -2.39 -0.02 0.92 16 Total: -1.00 -66.69 363.53 2.00 -64.69 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: -0.60 Total: 40.82 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 4.68 Total: -26.07 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -4.05 Total: -90.57 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.06 Total: -28.76 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -66.69 2.00 -64.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455902228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.952 kcal (2) G-P(sol) polarization free energy of solvation -66.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds