Wall clock time and date at job start Tue Mar 31 2020 08:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47117 * 2 1 4 4 O 1.42904 * 109.46934 * 180.02562 * 3 2 1 5 5 C 1.35895 * 116.99772 * 179.97438 * 4 3 2 6 6 C 1.38731 * 120.05644 * 179.97438 * 5 4 3 7 7 C 1.38141 * 119.94559 * 180.30145 * 6 5 4 8 8 C 1.38272 * 120.05764 * 359.42205 * 7 6 5 9 9 C 1.50697 * 119.94640 * 180.30145 * 8 7 6 10 10 N 1.46896 * 109.46958 * 270.29948 * 9 8 7 11 11 C 1.46905 * 110.99995 * 190.00214 * 10 9 8 12 12 C 1.50695 * 109.47315 * 164.74267 * 11 10 9 13 13 H 1.08006 * 120.00083 * 0.10320 * 12 11 10 14 14 C 1.37878 * 120.00018 * 180.10923 * 12 11 10 15 15 N 1.31514 * 119.99864 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00032 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47836 * 89.99847 * 16 14 12 18 18 H 1.48499 * 109.47136 * 210.00098 * 16 14 12 19 19 H 1.48510 * 109.47080 * 329.99505 * 16 14 12 20 20 C 1.46898 * 111.00336 * 66.04967 * 10 9 8 21 21 C 1.53003 * 109.47345 * 62.48209 * 20 10 9 22 22 C 1.47196 * 109.47236 * 182.49063 * 21 20 10 23 23 N 9.07975 * 158.12470 * 312.25583 * 3 1 2 24 24 C 1.38265 * 120.10759 * 0.60164 * 8 7 6 25 25 C 1.38149 * 120.05685 * 359.67863 * 24 8 7 26 26 H 1.08993 * 109.47271 * 300.00131 * 1 2 3 27 27 H 1.09009 * 109.46925 * 60.00098 * 1 2 3 28 28 H 1.09000 * 109.47397 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47219 * 240.00139 * 2 1 3 30 30 H 1.08995 * 109.46911 * 119.99879 * 2 1 3 31 31 H 1.08993 * 109.47157 * 59.99800 * 3 2 1 32 32 H 1.09002 * 109.47028 * 299.99380 * 3 2 1 33 33 H 1.08002 * 120.02915 * 0.02740 * 6 5 4 34 34 H 1.08002 * 119.97032 * 179.70259 * 7 6 5 35 35 H 1.08997 * 109.47444 * 30.30125 * 9 8 7 36 36 H 1.09001 * 109.46678 * 150.29890 * 9 8 7 37 37 H 1.09004 * 109.46744 * 284.73894 * 11 10 9 38 38 H 1.09003 * 109.47167 * 44.73654 * 11 10 9 39 39 H 0.97007 * 120.00121 * 179.97438 * 15 14 12 40 40 H 1.08991 * 109.47804 * 182.48734 * 20 10 9 41 41 H 1.09003 * 109.46623 * 302.48824 * 20 10 9 42 42 H 1.09004 * 109.47117 * 302.49010 * 21 20 10 43 43 H 1.09000 * 109.46866 * 62.48409 * 21 20 10 44 44 H 1.07995 * 119.97111 * 179.70054 * 24 8 7 45 45 H 1.07998 * 120.03019 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0860 2.6533 -0.0012 6 6 5.4713 2.7273 -0.0013 7 6 6.0961 3.9593 0.0044 8 6 5.3420 5.1183 -0.0020 9 6 6.0262 6.4610 -0.0026 10 7 6.2490 6.8976 1.3821 11 6 6.6946 8.2968 1.4277 12 6 6.5542 8.8232 2.8327 13 1 6.1737 8.1820 3.6142 14 6 6.9114 10.1234 3.1207 15 7 6.7884 10.5829 4.3468 16 14 7.5699 11.2322 1.7693 17 1 6.4412 11.9480 1.1222 18 1 8.5120 12.2197 2.3545 19 1 8.2803 10.4102 0.7568 20 6 7.2073 6.0175 2.0640 21 6 8.5617 6.0927 1.3563 22 6 9.5052 5.1660 2.0027 23 7 10.2332 4.4498 2.5039 24 6 3.9611 5.0473 -0.0014 25 6 3.3315 3.8176 -0.0012 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9563 -0.8901 33 1 6.0609 1.8224 -0.0013 34 1 7.1745 4.0174 0.0092 35 1 6.9839 6.3806 -0.5168 36 1 5.3979 7.1886 -0.5165 37 1 7.7387 8.3557 1.1203 38 1 6.0827 8.8951 0.7526 39 1 7.0400 11.4976 4.5495 40 1 7.3205 6.3368 3.0999 41 1 6.8403 4.9915 2.0380 42 1 8.4403 5.8156 0.3090 43 1 8.9493 7.1094 1.4205 44 1 3.3743 5.9539 -0.0015 45 1 2.2530 3.7627 -0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543710568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:08 Heat of formation + Delta-G solvation = -6.107424 kcal Electronic energy + Delta-G solvation = -23867.445347 eV Core-core repulsion = 20463.517070 eV Total energy + Delta-G solvation = -3403.928277 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.15823 -39.74874 -38.15186 -37.21911 -34.87825 -34.55873 -32.42382 -31.84226 -31.56158 -29.08860 -27.57969 -26.24064 -24.81372 -23.87162 -22.47541 -21.98959 -21.04383 -19.10070 -19.02677 -18.52175 -17.20426 -17.03457 -16.76435 -16.60953 -15.94570 -15.71086 -15.42164 -15.08179 -15.00968 -14.94816 -14.66446 -14.44304 -14.28403 -13.63880 -13.51028 -13.48619 -13.34054 -13.17878 -12.97488 -12.95175 -12.72650 -12.53972 -12.31600 -12.09901 -12.05074 -11.98680 -11.71277 -11.62632 -11.46945 -11.44134 -11.34448 -10.66635 -9.84231 -9.06845 -8.79463 -8.16815 -6.19296 0.47798 0.53701 1.45570 1.46212 1.55826 1.75510 1.79443 2.27617 2.44355 2.78813 3.03250 3.18972 3.57646 3.86342 3.96152 3.99485 4.04495 4.06423 4.17344 4.20180 4.30787 4.39015 4.43478 4.50418 4.56163 4.58995 4.67201 4.78256 4.81388 4.84851 4.97863 5.11121 5.12093 5.17861 5.18677 5.20810 5.30078 5.34718 5.42098 5.49508 5.66524 5.81614 5.91141 6.08620 6.40546 6.52621 6.60970 6.75414 6.89686 7.44084 9.00173 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.016350 B = 0.003173 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.177598 B = 8823.413916 C = 9832.092408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.052 3.948 4 O -0.333 6.333 5 C 0.113 3.887 6 C -0.165 4.165 7 C -0.076 4.076 8 C -0.112 4.112 9 C 0.086 3.914 10 N -0.529 5.529 11 C 0.162 3.838 12 C -0.506 4.506 13 H 0.033 0.967 14 C 0.003 3.997 15 N -0.956 5.956 16 Si 0.942 3.058 17 H -0.270 1.270 18 H -0.295 1.295 19 H -0.231 1.231 20 C 0.073 3.927 21 C -0.065 4.065 22 C 0.242 3.758 23 N -0.493 5.493 24 C -0.067 4.067 25 C -0.212 4.212 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.017 0.983 38 H 0.035 0.965 39 H 0.262 0.738 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.139 0.861 43 H 0.116 0.884 44 H 0.131 0.869 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.834 -16.292 -16.005 24.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.023 4.023 4 O -0.248 6.248 5 C 0.067 3.933 6 C -0.184 4.184 7 C -0.095 4.095 8 C -0.113 4.113 9 C -0.041 4.041 10 N -0.251 5.251 11 C 0.036 3.964 12 C -0.545 4.545 13 H 0.051 0.949 14 C -0.193 4.193 15 N -0.598 5.598 16 Si 0.765 3.235 17 H -0.195 1.195 18 H -0.222 1.222 19 H -0.154 1.154 20 C -0.057 4.057 21 C -0.107 4.107 22 C -0.075 4.075 23 N -0.172 5.172 24 C -0.086 4.086 25 C -0.230 4.230 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.151 0.849 34 H 0.158 0.842 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.035 0.965 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.157 0.843 43 H 0.134 0.866 44 H 0.149 0.851 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.118 -17.429 -14.920 24.336 hybrid contribution 0.485 1.349 -0.175 1.444 sum -7.633 -16.079 -15.094 23.338 Atomic orbital electron populations 1.21687 0.92910 1.03199 1.02651 1.21494 0.97100 0.93855 1.03391 1.23081 0.77306 0.99874 1.02026 1.86011 1.22724 1.27213 1.88836 1.19151 0.92633 0.84361 0.97109 1.20552 0.91577 0.99010 1.07265 1.21033 1.00373 0.90772 0.97280 1.19772 0.93847 0.94781 1.02893 1.21190 0.99967 0.93462 0.89457 1.62057 1.45157 1.02695 1.15163 1.20127 0.94949 0.85897 0.95459 1.21300 1.41245 0.96885 0.95035 0.94859 1.25864 0.96065 0.99750 0.97641 1.70081 1.50929 1.17011 1.21739 0.85801 0.78846 0.78925 0.79901 1.19521 1.22154 1.15367 1.21965 0.87484 0.97946 0.98305 1.20256 0.92267 0.96756 1.01380 1.29441 0.92880 0.92832 0.92328 1.81255 1.12311 1.12673 1.10956 1.21021 0.94349 0.97401 0.95837 1.21381 1.00690 0.92022 1.08952 0.92163 0.91772 0.90892 0.90905 0.91379 0.91817 0.91126 0.84864 0.84234 0.91599 0.89552 0.96539 0.94681 0.92873 0.92450 0.89892 0.84312 0.86630 0.85120 0.84244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 71.98 0.71 -0.63 16 2 C -0.12 -1.56 6.30 30.60 0.19 -1.36 16 3 C 0.05 0.84 4.74 71.98 0.34 1.19 16 4 O -0.33 -7.62 10.14 -92.36 -0.94 -8.55 16 5 C 0.11 2.72 6.69 22.51 0.15 2.87 16 6 C -0.17 -3.88 9.99 22.36 0.22 -3.66 16 7 C -0.08 -1.71 7.90 22.25 0.18 -1.53 16 8 C -0.11 -2.72 4.90 -19.85 -0.10 -2.81 16 9 C 0.09 2.14 4.91 85.56 0.42 2.56 16 10 N -0.53 -17.71 4.65 -905.38 -4.21 -21.92 16 11 C 0.16 6.42 3.65 85.55 0.31 6.73 16 12 C -0.51 -26.70 9.12 25.60 0.23 -26.46 16 13 H 0.03 2.02 7.71 -2.91 -0.02 2.00 16 14 C 0.00 0.17 5.47 84.65 0.46 0.63 16 15 N -0.96 -58.25 13.96 21.45 0.30 -57.96 16 16 Si 0.94 40.40 27.46 68.60 1.88 42.29 16 17 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 18 H -0.30 -12.98 7.11 99.48 0.71 -12.28 16 19 H -0.23 -8.51 6.55 99.48 0.65 -7.86 16 20 C 0.07 2.28 4.77 86.30 0.41 2.70 16 21 C -0.07 -1.62 4.89 28.79 0.14 -1.48 16 22 C 0.24 7.04 15.44 89.42 1.38 8.42 16 23 N -0.49 -16.87 18.55 20.02 0.37 -16.50 16 24 C -0.07 -1.63 9.69 22.26 0.22 -1.42 16 25 C -0.21 -4.82 9.04 22.37 0.20 -4.62 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 1.01 7.66 -2.39 -0.02 0.99 16 32 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 33 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 34 H 0.14 2.59 7.16 -2.91 -0.02 2.57 16 35 H 0.07 1.30 5.97 -2.39 -0.01 1.29 16 36 H 0.09 2.08 7.81 -2.39 -0.02 2.06 16 37 H 0.02 0.62 4.95 -2.39 -0.01 0.60 16 38 H 0.04 1.36 7.25 -2.39 -0.02 1.34 16 39 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 40 H 0.06 2.23 7.20 -2.39 -0.02 2.21 16 41 H 0.08 2.40 5.97 -2.39 -0.01 2.38 16 42 H 0.14 2.43 5.57 -2.39 -0.01 2.41 16 43 H 0.12 3.06 6.33 -2.39 -0.02 3.04 16 44 H 0.13 2.99 8.06 -2.91 -0.02 2.96 16 45 H 0.14 2.58 6.30 -2.91 -0.02 2.56 16 Total: -1.00 -68.17 365.60 3.82 -64.35 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.93 Total: 17.17 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 5.48 Total: -18.88 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -3.54 Total: -96.38 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.94 Total: -8.55 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 1.88 Total: 42.29 kcal Total: -68.17 3.82 -64.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543710568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.244 kcal (2) G-P(sol) polarization free energy of solvation -68.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds