Wall clock time and date at job start Tue Mar 31 2020 08:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.88027 * 2 1 4 4 C 1.55147 * 110.99133 * 236.15152 * 2 1 3 5 5 C 1.54315 * 103.01962 * 206.25392 * 4 2 1 6 6 H 1.09003 * 109.89106 * 262.87870 * 5 4 2 7 7 C 1.50704 * 110.02181 * 141.76539 * 5 4 2 8 8 C 1.38234 * 119.99497 * 126.80747 * 7 5 4 9 9 C 1.38241 * 119.99394 * 179.78979 * 8 7 5 10 10 C 1.38234 * 120.00140 * 0.43860 * 9 8 7 11 11 C 1.38232 * 119.99801 * 359.81783 * 10 9 8 12 12 C 1.38228 * 120.00294 * 359.97137 * 11 10 9 13 13 N 1.47447 * 107.23568 * 22.28514 * 5 4 2 14 14 C 1.46903 * 110.99935 * 123.25378 * 13 5 4 15 15 C 1.50694 * 109.46942 * 164.47332 * 14 13 5 16 16 O 1.21285 * 120.00329 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00057 * 180.02562 * 15 14 13 18 18 C 1.46502 * 119.99981 * 180.02562 * 17 15 14 19 19 C 1.50706 * 109.46848 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00330 * 359.97438 * 19 18 17 21 21 C 1.37886 * 119.99718 * 179.97438 * 19 18 17 22 22 N 1.31509 * 119.99723 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99871 * 359.97438 * 21 19 18 24 24 H 1.48490 * 109.47117 * 90.00164 * 23 21 19 25 25 H 1.48506 * 109.46837 * 209.99902 * 23 21 19 26 26 H 1.48497 * 109.47406 * 329.99472 * 23 21 19 27 27 C 1.47842 * 108.56446 * 0.98956 * 13 5 4 28 28 H 1.09002 * 109.47494 * 183.84817 * 1 2 3 29 29 H 1.09003 * 109.47153 * 303.84434 * 1 2 3 30 30 H 1.09001 * 109.47286 * 63.84574 * 1 2 3 31 31 H 1.08997 * 110.70149 * 87.87569 * 4 2 1 32 32 H 1.08992 * 110.70799 * 324.64017 * 4 2 1 33 33 H 1.07994 * 120.00477 * 0.02562 * 8 7 5 34 34 H 1.08005 * 119.99648 * 180.27807 * 9 8 7 35 35 H 1.07996 * 119.99837 * 179.83252 * 10 9 8 36 36 H 1.08004 * 119.99990 * 179.97438 * 11 10 9 37 37 H 1.07998 * 120.00254 * 179.97438 * 12 11 10 38 38 H 1.09002 * 109.47104 * 284.47291 * 14 13 5 39 39 H 1.08995 * 109.46983 * 44.47606 * 14 13 5 40 40 H 0.97000 * 120.00222 * 0.02562 * 17 15 14 41 41 H 1.09002 * 109.47094 * 299.99666 * 18 17 15 42 42 H 1.08992 * 109.47473 * 59.99669 * 18 17 15 43 43 H 0.96999 * 119.99884 * 179.97438 * 22 21 19 44 44 H 1.08999 * 110.37628 * 94.73493 * 27 13 5 45 45 H 1.09002 * 110.37439 * 217.07408 * 27 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9184 1.0184 0.0000 4 6 2.0857 -0.8068 -1.2030 5 6 3.4691 -1.2709 -0.7010 6 1 4.2420 -0.5941 -1.0652 7 6 3.7482 -2.6724 -1.1795 8 6 4.9182 -2.9498 -1.8614 9 6 5.1762 -4.2363 -2.2965 10 6 4.2600 -5.2435 -2.0577 11 6 3.0875 -4.9649 -1.3805 12 6 2.8315 -3.6794 -0.9416 13 7 3.4313 -1.2423 0.7727 14 6 3.7611 -2.5594 1.3335 15 6 4.0863 -2.4147 2.7978 16 8 4.0468 -1.3221 3.3228 17 7 4.4212 -3.4995 3.5241 18 6 4.7368 -3.3590 4.9478 19 6 5.0753 -4.7102 5.5230 20 1 5.0568 -5.5860 4.8915 21 6 5.4087 -4.8282 6.8558 22 7 5.7036 -6.0073 7.3579 23 14 5.4415 -3.3131 7.9480 24 1 4.1021 -3.1128 8.5569 25 1 6.4506 -3.4987 9.0216 26 1 5.7981 -2.1235 7.1339 27 6 2.0849 -0.8064 1.2006 28 1 -0.3634 -1.0253 0.0690 29 1 -0.3633 0.5724 0.8536 30 1 -0.3634 0.4530 -0.9224 31 1 2.1884 -0.1685 -2.0805 32 1 1.4475 -1.6631 -1.4206 33 1 5.6325 -2.1622 -2.0508 34 1 6.0924 -4.4539 -2.8253 35 1 4.4603 -6.2479 -2.4001 36 1 2.3715 -5.7517 -1.1943 37 1 1.9154 -3.4617 -0.4128 38 1 2.9089 -3.2286 1.2150 39 1 4.6229 -2.9721 0.8090 40 1 4.4532 -4.3734 3.1042 41 1 5.5886 -2.6893 5.0667 42 1 3.8747 -2.9469 5.4721 43 1 5.9385 -6.0903 8.2953 44 1 1.4523 -1.6709 1.4020 45 1 2.1544 -0.1719 2.0842 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796621686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:45 Heat of formation + Delta-G solvation = -3.563102 kcal Electronic energy + Delta-G solvation = -24870.677968 eV Core-core repulsion = 21466.860021 eV Total energy + Delta-G solvation = -3403.817947 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80517 -38.71611 -37.91816 -34.21969 -33.63860 -32.30269 -31.86858 -31.07558 -29.26345 -28.17796 -26.67740 -25.19626 -23.00076 -22.61223 -21.84233 -20.45412 -20.15819 -19.61922 -17.50145 -16.83948 -16.41097 -15.87345 -15.55504 -15.23950 -15.05473 -14.90725 -14.45799 -13.97465 -13.85173 -13.63643 -13.46205 -13.25856 -13.10569 -12.62641 -12.58612 -12.39479 -12.25315 -12.10859 -11.93111 -11.49903 -11.38425 -11.14550 -10.96432 -10.85511 -10.75261 -10.72994 -10.69665 -9.94211 -9.46430 -9.24584 -9.08871 -8.75004 -8.73872 -8.20589 -8.04472 -6.19103 -4.20855 1.14734 1.24166 3.28190 3.35033 3.35279 3.44881 3.50675 3.78887 4.31164 4.34468 4.36153 4.49437 4.60160 4.76577 4.82743 4.90539 4.95787 5.16257 5.18519 5.24734 5.32195 5.35336 5.38304 5.42473 5.47823 5.56511 5.62268 5.65051 5.73752 5.77494 5.81465 5.89579 5.94880 6.16895 6.20758 6.29622 6.36886 6.44588 6.81409 6.82441 6.97705 6.99657 7.12341 7.31169 7.44748 8.19426 8.58484 8.79253 9.04976 9.41765 10.92950 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.014233 B = 0.004020 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.822406 B = 6964.297824 C = 8337.771880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.085 0.915 4 C -0.130 4.130 5 C 0.109 3.891 6 H 0.094 0.906 7 C -0.095 4.095 8 C -0.110 4.110 9 C -0.118 4.118 10 C -0.120 4.120 11 C -0.117 4.117 12 C -0.115 4.115 13 N -0.495 5.495 14 C 0.029 3.971 15 C 0.499 3.501 16 O -0.541 6.541 17 N -0.710 5.710 18 C 0.223 3.777 19 C -0.542 4.542 20 H 0.079 0.921 21 C 0.077 3.923 22 N -0.894 5.894 23 Si 0.877 3.123 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.260 1.260 27 C 0.049 3.951 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.394 0.606 41 H 0.024 0.976 42 H 0.019 0.981 43 H 0.267 0.733 44 H 0.043 0.957 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.778 6.390 -22.396 24.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.103 0.897 4 C -0.168 4.168 5 C 0.002 3.998 6 H 0.112 0.888 7 C -0.096 4.096 8 C -0.129 4.129 9 C -0.136 4.136 10 C -0.139 4.139 11 C -0.135 4.135 12 C -0.133 4.133 13 N -0.218 5.218 14 C -0.102 4.102 15 C 0.283 3.717 16 O -0.419 6.419 17 N -0.359 5.359 18 C 0.100 3.900 19 C -0.580 4.580 20 H 0.097 0.903 21 C -0.126 4.126 22 N -0.531 5.531 23 Si 0.703 3.297 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.185 1.185 27 C -0.078 4.078 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.084 0.916 39 H 0.119 0.881 40 H 0.227 0.773 41 H 0.042 0.958 42 H 0.037 0.963 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.359 7.437 -21.607 24.007 hybrid contribution -0.406 -0.568 0.254 0.743 sum -7.766 6.870 -21.353 23.737 Atomic orbital electron populations 1.21704 0.94400 1.01902 1.01848 1.22331 0.95584 0.99889 0.94412 0.89658 1.22992 0.95355 1.00136 0.98344 1.21559 0.98138 0.92295 0.87828 0.88790 1.20200 0.95042 0.95937 0.98466 1.21072 0.96567 0.97008 0.98255 1.21160 0.99321 0.93031 1.00095 1.21167 0.94343 0.99251 0.99093 1.21129 0.97594 0.96504 0.98308 1.21021 0.99252 0.93087 0.99953 1.63561 1.28037 1.25118 1.05096 1.22495 1.02157 0.91397 0.94151 1.20464 0.78088 0.84957 0.88159 1.90629 1.52570 1.26101 1.72603 1.46158 1.68338 1.09235 1.12192 1.19447 0.95619 0.98060 0.76839 1.21111 1.48460 0.92571 0.95862 0.90316 1.24795 0.94000 0.96134 0.97685 1.69882 1.45875 1.22952 1.14386 0.86816 0.78450 0.83837 0.80598 1.19891 1.20916 1.18464 1.23222 0.87480 0.98640 0.98445 0.92721 0.92253 0.92504 0.90665 0.90900 0.85894 0.86037 0.86100 0.85983 0.86368 0.91617 0.88103 0.77257 0.95794 0.96347 0.92308 0.93854 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.31 37.15 0.35 -0.82 16 2 C -0.10 -1.02 3.63 -88.48 -0.32 -1.34 16 3 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -1.18 5.81 -24.91 -0.14 -1.33 16 5 C 0.11 1.20 3.63 -67.87 -0.25 0.95 16 6 H 0.09 1.01 7.91 -51.93 -0.41 0.60 16 7 C -0.10 -1.01 2.98 -104.62 -0.31 -1.32 16 8 C -0.11 -1.11 9.55 -39.58 -0.38 -1.48 16 9 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 10 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 11 C -0.12 -1.13 10.05 -39.59 -0.40 -1.53 16 12 C -0.11 -1.18 6.34 -39.59 -0.25 -1.43 16 13 N -0.50 -6.98 4.76 -226.15 -1.08 -8.06 16 14 C 0.03 0.44 3.92 -4.98 -0.02 0.42 16 15 C 0.50 9.96 7.68 -10.99 -0.08 9.88 16 16 O -0.54 -12.73 15.47 5.55 0.09 -12.65 16 17 N -0.71 -14.96 5.55 -61.47 -0.34 -15.30 16 18 C 0.22 5.63 4.50 -5.19 -0.02 5.61 16 19 C -0.54 -15.15 9.83 -34.43 -0.34 -15.48 16 20 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 21 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 22 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 23 Si 0.88 21.80 27.47 -169.99 -4.67 17.14 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 27 C 0.05 0.65 5.43 -2.30 -0.01 0.64 16 28 H 0.05 0.45 8.07 -51.93 -0.42 0.03 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.65 6.49 -51.93 -0.34 0.31 16 33 H 0.12 1.08 7.96 -52.49 -0.42 0.66 16 34 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 37 H 0.12 1.18 6.76 -52.49 -0.36 0.82 16 38 H 0.07 0.89 5.36 -51.93 -0.28 0.62 16 39 H 0.10 1.47 6.48 -51.93 -0.34 1.14 16 40 H 0.39 7.41 8.32 -40.82 -0.34 7.07 16 41 H 0.02 0.64 7.20 -51.93 -0.37 0.27 16 42 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 44 H 0.04 0.56 7.37 -51.93 -0.38 0.18 16 45 H 0.09 1.43 7.66 -51.93 -0.40 1.03 16 LS Contribution 356.24 15.07 5.37 5.37 Total: -1.00 -32.63 356.24 -9.92 -42.55 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.98 Total: 5.13 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -3.08 Total: -8.14 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.64 Total: -49.40 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.63 -9.92 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796621686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.988 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds