Wall clock time and date at job start Tue Mar 31 2020 08:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46727 * 2 1 4 4 C 1.52998 * 109.47390 * 239.99581 * 2 1 3 5 5 C 1.52993 * 109.47282 * 300.00294 * 4 2 1 6 6 C 1.52998 * 109.47104 * 299.99753 * 5 4 2 7 7 C 1.53001 * 109.47195 * 59.99922 * 6 5 4 8 8 C 1.52998 * 109.46771 * 119.99506 * 2 1 3 9 9 H 1.09007 * 109.46667 * 179.97438 * 8 2 1 10 10 C 1.53001 * 109.47570 * 300.00115 * 8 2 1 11 11 C 1.50696 * 109.47029 * 185.00191 * 10 8 2 12 12 O 1.21272 * 120.00295 * 359.97438 * 11 10 8 13 13 N 1.34780 * 119.99761 * 179.97438 * 11 10 8 14 14 C 1.39268 * 120.00130 * 185.14221 * 13 11 10 15 15 C 1.39674 * 119.57075 * 174.66774 * 14 13 11 16 16 C 1.38663 * 119.49085 * 180.02562 * 15 14 13 17 17 C 1.38350 * 118.66914 * 359.74207 * 16 15 14 18 18 C 1.40582 * 119.12585 * 0.52026 * 17 16 15 19 19 C 1.41343 * 119.78200 * 179.74432 * 18 17 16 20 20 H 1.07997 * 119.99943 * 359.72804 * 19 18 17 21 21 C 1.40026 * 119.99754 * 179.72849 * 19 18 17 22 22 N 1.30746 * 120.00170 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00037 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47089 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47096 * 300.00046 * 23 21 19 26 26 H 1.48501 * 109.46882 * 60.00199 * 23 21 19 27 27 N 1.31899 * 119.57403 * 354.69997 * 14 13 11 28 28 H 1.08995 * 109.47085 * 300.00356 * 1 2 3 29 29 H 1.09000 * 109.46591 * 60.00147 * 1 2 3 30 30 H 1.08997 * 109.47084 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47030 * 179.97438 * 4 2 1 32 32 H 1.09009 * 109.47043 * 59.99906 * 4 2 1 33 33 H 1.08995 * 109.47382 * 179.97438 * 5 4 2 34 34 H 1.09002 * 109.47540 * 59.99760 * 5 4 2 35 35 H 1.08994 * 109.47153 * 300.00108 * 6 5 4 36 36 H 1.08997 * 109.47353 * 179.97438 * 6 5 4 37 37 H 1.08999 * 109.47374 * 180.02562 * 7 6 5 38 38 H 1.09007 * 109.47239 * 60.00212 * 7 6 5 39 39 H 1.09001 * 109.46987 * 64.99870 * 10 8 2 40 40 H 1.08998 * 109.46671 * 305.00332 * 10 8 2 41 41 H 0.97000 * 119.99733 * 5.15549 * 13 11 10 42 42 H 1.07993 * 120.25543 * 359.97438 * 15 14 13 43 43 H 1.07990 * 120.66249 * 180.02562 * 16 15 14 44 44 H 1.07991 * 120.43486 * 180.25286 * 17 16 15 45 45 H 0.96998 * 120.00102 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5301 -2.1638 -1.2491 6 6 2.0401 -2.8850 0.0001 7 6 1.5300 -2.1637 1.2493 8 6 2.0399 -0.7211 1.2493 9 1 3.1300 -0.7215 1.2491 10 6 1.5299 0.0001 2.4985 11 6 2.1308 -0.6351 3.7259 12 8 2.8916 -1.5727 3.6127 13 7 1.8227 -0.1613 4.9494 14 6 2.4586 -0.6765 6.0762 15 6 2.2160 -0.1039 7.3269 16 6 2.8504 -0.6179 8.4476 17 6 3.7063 -1.6936 8.2910 18 6 3.9131 -2.2218 7.0047 19 6 4.7888 -3.3172 6.8280 20 1 5.2998 -3.7427 7.6790 21 6 4.9937 -3.8505 5.5496 22 7 4.3755 -3.3350 4.5193 23 14 6.1504 -5.2986 5.3161 24 1 6.1925 -5.6719 3.8794 25 1 7.5131 -4.9219 5.7703 26 1 5.6646 -6.4537 6.1131 27 7 3.2826 -1.6985 5.9484 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 -0.7209 -1.2493 32 1 1.6767 -0.2075 -2.1392 33 1 1.8931 -2.6775 -2.1392 34 1 0.4401 -2.1638 -1.2492 35 1 3.1300 -2.8850 0.0002 36 1 1.6764 -3.9125 0.0004 37 1 1.8937 -2.6772 2.1394 38 1 0.4400 -2.1637 1.2494 39 1 0.4436 -0.0768 2.5444 40 1 1.8183 1.0504 2.4548 41 1 1.1578 0.5385 5.0451 42 1 1.5401 0.7332 7.4202 43 1 2.6764 -0.1901 9.4237 44 1 4.2122 -2.1190 9.1450 45 1 4.5171 -3.7047 3.6338 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882477886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:26 Heat of formation + Delta-G solvation = -7.634787 kcal Electronic energy + Delta-G solvation = -25445.205625 eV Core-core repulsion = 22041.211117 eV Total energy + Delta-G solvation = -3403.994508 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.83869 -38.67329 -37.22791 -34.07454 -32.94842 -32.57541 -31.44552 -30.26684 -29.20618 -27.59859 -26.08894 -25.33505 -22.47607 -22.01113 -21.39188 -20.78577 -19.12607 -18.23761 -17.65272 -16.13441 -16.07027 -15.49210 -14.97794 -14.66655 -14.41794 -14.20441 -14.07447 -13.61456 -13.53061 -13.04522 -12.86740 -12.70410 -12.47010 -12.22822 -11.98058 -11.86557 -11.47429 -11.42429 -11.17422 -11.06981 -10.94838 -10.91771 -10.63649 -10.52335 -10.43744 -10.03667 -9.93061 -9.89325 -9.75596 -9.53693 -8.96768 -8.74050 -7.92725 -7.14926 -6.91009 -6.10580 -4.36878 2.82715 3.11431 3.17871 3.19839 3.29532 3.83205 3.94552 4.08464 4.76969 4.80167 4.87062 4.95505 5.25294 5.32147 5.39963 5.43265 5.45833 5.54465 5.71322 5.74779 5.80588 5.83299 5.90515 6.01023 6.01531 6.08165 6.11509 6.15754 6.22892 6.28639 6.41082 6.42310 6.52729 6.53557 6.73545 6.77860 6.87533 6.88551 6.92640 7.28360 7.59556 7.67685 7.84532 8.11879 8.24703 8.52693 8.78439 9.08655 9.37560 10.28724 10.51234 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.014043 B = 0.005117 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.391711 B = 5470.676058 C = 7258.626672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 H 0.065 0.935 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.121 4.121 8 C -0.061 4.061 9 H 0.077 0.923 10 C -0.136 4.136 11 C 0.466 3.534 12 O -0.405 6.405 13 N -0.670 5.670 14 C 0.372 3.628 15 C -0.359 4.359 16 C -0.037 4.037 17 C -0.307 4.307 18 C 0.271 3.729 19 C -0.426 4.426 20 H 0.081 0.919 21 C 0.059 3.941 22 N -0.653 5.653 23 Si 0.894 3.106 24 H -0.279 1.279 25 H -0.268 1.268 26 H -0.267 1.267 27 N -0.472 5.472 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.397 0.603 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.036 5.494 -10.867 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 H 0.083 0.917 4 C -0.149 4.149 5 C -0.158 4.158 6 C -0.153 4.153 7 C -0.158 4.158 8 C -0.080 4.080 9 H 0.096 0.904 10 C -0.177 4.177 11 C 0.249 3.751 12 O -0.268 6.268 13 N -0.317 5.317 14 C 0.133 3.867 15 C -0.385 4.385 16 C -0.061 4.061 17 C -0.331 4.331 18 C 0.146 3.854 19 C -0.457 4.457 20 H 0.099 0.901 21 C -0.171 4.171 22 N -0.271 5.271 23 Si 0.718 3.282 24 H -0.204 1.204 25 H -0.192 1.192 26 H -0.192 1.192 27 N -0.191 5.191 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.230 0.770 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.310 4.375 -12.121 14.349 hybrid contribution -0.095 0.313 0.884 0.943 sum -6.405 4.689 -11.237 13.758 Atomic orbital electron populations 1.21988 0.95690 1.02131 1.01068 1.21136 0.95699 0.98815 0.94899 0.91668 1.21526 1.00588 0.95760 0.97073 1.21581 1.00618 0.95621 0.97938 1.21479 1.00965 0.98455 0.94432 1.21741 0.99467 0.95272 0.99328 1.20845 1.00948 0.94777 0.91397 0.90423 1.21808 1.01456 1.00491 0.93933 1.20836 0.84432 0.85910 0.83964 1.91098 1.29108 1.22108 1.84505 1.43528 1.42277 1.40360 1.05560 1.18666 0.91986 0.91918 0.84093 1.20510 1.15418 1.09583 0.92973 1.20557 0.94720 0.94831 0.95996 1.21618 1.09254 1.03920 0.98259 1.18385 0.89822 0.91241 0.85939 1.19532 1.21132 1.11072 0.93947 0.90120 1.26152 0.96586 0.97910 0.96402 1.70312 1.27137 1.30734 0.98960 0.86617 0.81426 0.82215 0.77910 1.20410 1.19233 1.19230 1.68717 1.10214 1.09405 1.30749 0.92656 0.93380 0.91961 0.92090 0.92577 0.92808 0.92085 0.92025 0.92617 0.88979 0.92998 0.89926 0.90133 0.77004 0.89220 0.88750 0.88677 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.15 37.16 0.30 -1.18 16 2 C -0.09 -0.95 2.72 -90.62 -0.25 -1.20 16 3 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.11 -1.18 5.45 -26.74 -0.15 -1.33 16 5 C -0.12 -1.31 5.65 -26.74 -0.15 -1.46 16 6 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 7 C -0.12 -1.79 4.67 -26.73 -0.12 -1.91 16 8 C -0.06 -0.84 1.61 -90.62 -0.15 -0.98 16 9 H 0.08 1.26 7.96 -51.93 -0.41 0.85 16 10 C -0.14 -1.88 4.67 -27.88 -0.13 -2.01 16 11 C 0.47 9.09 7.50 -10.99 -0.08 9.00 16 12 O -0.40 -9.65 9.74 5.56 0.05 -9.60 16 13 N -0.67 -13.14 5.38 -11.40 -0.06 -13.20 16 14 C 0.37 9.12 7.43 -154.98 -1.15 7.97 16 15 C -0.36 -8.17 9.96 -38.89 -0.39 -8.56 16 16 C -0.04 -0.85 10.15 -39.38 -0.40 -1.25 16 17 C -0.31 -7.85 9.83 -38.66 -0.38 -8.23 16 18 C 0.27 7.67 6.55 -85.00 -0.56 7.12 16 19 C -0.43 -11.80 9.14 -37.73 -0.34 -12.14 16 20 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 21 C 0.06 1.55 5.50 -17.34 -0.10 1.45 16 22 N -0.65 -17.84 8.99 55.55 0.50 -17.34 16 23 Si 0.89 19.34 29.56 -169.99 -5.02 14.32 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 27 N -0.47 -13.22 5.74 -10.25 -0.06 -13.28 16 28 H 0.05 0.51 6.54 -51.93 -0.34 0.17 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.64 4.81 -51.93 -0.25 0.39 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.75 5.95 -51.93 -0.31 1.44 16 38 H 0.05 0.71 6.43 -51.93 -0.33 0.38 16 39 H 0.08 0.99 6.71 -51.93 -0.35 0.64 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.40 6.02 8.70 -40.82 -0.36 5.67 16 42 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 45 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 LS Contribution 344.60 15.07 5.19 5.19 Total: -1.00 -31.21 344.60 -10.48 -41.68 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -6.88 Total: 8.61 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -4.20 Total: -16.39 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.38 Total: -43.82 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.05 Total: -9.60 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.21 -10.48 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882477886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.048 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds