Wall clock time and date at job start Tue Mar 31 2020 09:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21283 * 120.00472 * 119.99880 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 H 1.09008 * 110.64334 * 328.41743 * 7 6 4 9 9 C 1.55161 * 110.72256 * 91.75698 * 7 6 4 10 10 C 1.54910 * 101.58284 * 153.86606 * 9 7 6 11 11 N 1.47429 * 104.83088 * 322.98842 * 10 9 7 12 12 C 1.36938 * 125.64780 * 204.09478 * 11 10 9 13 13 H 1.08002 * 120.00005 * 180.02562 * 12 11 10 14 14 C 1.38810 * 119.99668 * 0.04257 * 12 11 10 15 15 N 1.31618 * 120.00356 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99634 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47129 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47291 * 120.00044 * 16 14 12 19 19 H 1.48502 * 109.46929 * 240.00163 * 16 14 12 20 20 C 1.47018 * 108.70350 * 24.13179 * 11 10 9 21 21 H 1.09002 * 109.88522 * 239.52207 * 20 11 10 22 22 C 1.53006 * 109.88245 * 118.35626 * 20 11 10 23 23 C 1.50698 * 109.46679 * 240.00551 * 2 1 3 24 24 C 1.38240 * 120.00131 * 299.72748 * 23 2 1 25 25 C 1.38238 * 119.99947 * 179.76792 * 24 23 2 26 26 C 1.38240 * 119.99850 * 0.48396 * 25 24 23 27 27 C 1.38234 * 119.99872 * 359.78894 * 26 25 24 28 28 C 1.38226 * 120.00346 * 359.96097 * 27 26 25 29 29 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 31 31 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 32 32 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 33 33 H 1.09002 * 110.99906 * 271.93778 * 9 7 6 34 34 H 1.09004 * 111.00127 * 35.79050 * 9 7 6 35 35 H 1.08998 * 110.36539 * 204.15498 * 10 9 7 36 36 H 1.08998 * 110.45841 * 81.87633 * 10 9 7 37 37 H 0.97001 * 119.99633 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.47094 * 302.18849 * 22 20 11 39 39 H 1.08997 * 109.46881 * 62.19117 * 22 20 11 40 40 H 1.09003 * 109.46753 * 182.19342 * 22 20 11 41 41 H 1.07994 * 119.99915 * 0.02562 * 24 23 2 42 42 H 1.08001 * 120.00240 * 180.25014 * 25 24 23 43 43 H 1.07999 * 119.99390 * 179.76818 * 26 25 24 44 44 H 1.08003 * 119.99448 * 179.97438 * 27 26 25 45 45 H 1.08004 * 120.00377 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1190 6 7 1.7068 -0.2502 2.4545 7 6 2.1902 -0.9445 3.6505 8 1 2.2873 -2.0136 3.4614 9 6 3.5386 -0.3427 4.1274 10 6 3.5112 -0.6777 5.6395 11 7 2.1012 -0.5127 6.0372 12 6 1.6554 -0.2442 7.3038 13 1 0.5971 -0.1413 7.4934 14 6 2.5637 -0.1038 8.3440 15 7 3.8535 -0.2283 8.1129 16 14 1.9555 0.2618 10.0721 17 1 0.4734 0.3539 10.0660 18 1 2.3804 -0.8277 10.9872 19 1 2.5292 1.5504 10.5365 20 6 1.2530 -0.6849 4.8488 21 1 0.6706 0.2199 4.6747 22 6 0.3174 -1.8795 5.0460 23 6 2.0322 -0.7103 -1.2305 24 6 1.7029 -2.0354 -1.4466 25 6 2.1596 -2.6855 -2.5778 26 6 2.9540 -2.0135 -3.4880 27 6 3.2880 -0.6901 -3.2690 28 6 2.8270 -0.0385 -2.1405 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8898 32 1 1.1490 0.5383 2.5436 33 1 4.3798 -0.8299 3.6344 34 1 3.5641 0.7351 3.9663 35 1 4.1450 0.0151 6.1931 36 1 3.8352 -1.7047 5.8082 37 1 4.4881 -0.1305 8.8400 38 1 0.9077 -2.7754 5.2385 39 1 -0.3411 -1.6892 5.8934 40 1 -0.2806 -2.0249 4.1464 41 1 1.0853 -2.5614 -0.7337 42 1 1.8990 -3.7196 -2.7487 43 1 3.3139 -2.5226 -4.3698 44 1 3.9089 -0.1652 -3.9799 45 1 3.0876 0.9956 -1.9697 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088990226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:42 Heat of formation + Delta-G solvation = -10.540066 kcal Electronic energy + Delta-G solvation = -24655.163305 eV Core-core repulsion = 21251.042815 eV Total energy + Delta-G solvation = -3404.120491 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.40218 -39.98948 -38.95252 -35.59803 -35.13484 -33.70573 -32.05946 -31.74065 -30.72168 -29.92483 -26.74246 -25.89251 -25.30534 -23.45606 -22.89500 -21.95864 -21.52562 -20.68405 -18.71949 -18.00874 -17.82729 -17.30222 -16.66999 -16.36039 -15.94176 -15.71593 -15.47006 -15.30665 -14.83539 -14.45407 -14.36177 -14.12863 -14.01626 -13.87637 -13.56080 -13.24073 -13.14930 -12.99118 -12.92710 -12.75364 -12.62474 -12.49566 -12.23252 -12.07993 -11.94631 -11.83000 -11.75267 -11.57897 -11.43412 -10.76246 -10.70709 -9.98012 -9.73090 -9.58332 -8.89947 -7.74677 -5.19832 0.47061 0.58003 1.48538 1.49207 1.59230 1.68111 2.17345 2.52557 2.97477 3.36082 3.55998 3.62097 3.82681 3.87029 3.96915 4.09581 4.17347 4.22206 4.27417 4.32419 4.38894 4.49733 4.62427 4.66536 4.68813 4.72446 4.80178 4.87771 4.92775 4.97784 5.04955 5.13365 5.16697 5.21217 5.28443 5.37042 5.50345 5.59751 5.61123 5.65180 5.67535 5.74475 5.80050 6.17293 6.30559 6.62262 7.11316 7.31149 7.79153 8.42806 9.27436 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.035024 B = 0.002910 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.260482 B = 9618.484207 C = 9847.343814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 H 0.128 0.872 4 C 0.516 3.484 5 O -0.576 6.576 6 N -0.703 5.703 7 C 0.153 3.847 8 H 0.076 0.924 9 C -0.138 4.138 10 C 0.158 3.842 11 N -0.614 5.614 12 C -0.224 4.224 13 H 0.086 0.914 14 C -0.070 4.070 15 N -0.952 5.952 16 Si 0.978 3.022 17 H -0.264 1.264 18 H -0.297 1.297 19 H -0.293 1.293 20 C 0.151 3.849 21 H 0.055 0.945 22 C -0.146 4.146 23 C -0.081 4.081 24 C -0.104 4.104 25 C -0.137 4.137 26 C -0.128 4.128 27 C -0.130 4.130 28 C -0.122 4.122 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.414 0.586 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.077 0.923 36 H -0.018 1.018 37 H 0.245 0.755 38 H 0.032 0.968 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.131 0.869 43 H 0.141 0.859 44 H 0.144 0.856 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.129 2.437 -22.923 24.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.085 4.085 3 H 0.146 0.854 4 C 0.303 3.697 5 O -0.455 6.455 6 N -0.355 5.355 7 C 0.047 3.953 8 H 0.094 0.906 9 C -0.178 4.178 10 C 0.032 3.968 11 N -0.339 5.339 12 C -0.353 4.353 13 H 0.104 0.896 14 C -0.262 4.262 15 N -0.602 5.602 16 Si 0.807 3.193 17 H -0.188 1.188 18 H -0.225 1.225 19 H -0.220 1.220 20 C 0.044 3.956 21 H 0.072 0.928 22 C -0.205 4.205 23 C -0.082 4.082 24 C -0.122 4.122 25 C -0.155 4.155 26 C -0.146 4.146 27 C -0.148 4.148 28 C -0.140 4.140 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.251 0.749 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.000 1.000 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.125 0.875 42 H 0.149 0.851 43 H 0.159 0.841 44 H 0.162 0.838 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.596 1.778 -22.792 23.793 hybrid contribution 0.035 -0.015 1.506 1.507 sum -6.561 1.763 -21.285 22.343 Atomic orbital electron populations 1.21809 0.90178 1.02985 1.04456 1.20345 0.99096 1.00615 0.88427 0.85426 1.21091 0.79342 0.84134 0.85107 1.90707 1.39379 1.28271 1.87167 1.45851 1.53387 1.31838 1.04398 1.21675 0.93306 0.96362 0.83956 0.90603 1.23187 0.97116 1.00678 0.96805 1.21655 0.87150 0.97190 0.90798 1.44745 1.02104 1.83025 1.04056 1.19435 0.92662 1.39158 0.84059 0.89594 1.25619 0.95665 1.03096 1.01869 1.70055 1.01143 1.58124 1.30872 0.85003 0.77969 0.76646 0.79684 1.18815 1.22494 1.21970 1.21211 0.91483 0.96768 0.86100 0.92770 1.22121 0.99144 0.98078 1.01199 1.19532 0.98752 0.94497 0.95384 1.21005 0.99870 0.94495 0.96868 1.21370 0.98855 1.00603 0.94701 1.21453 0.98047 0.95216 0.99900 1.21427 1.00237 0.95178 0.97965 1.21324 0.97191 1.00933 0.94580 0.92837 0.90020 0.89607 0.74909 0.92016 0.90951 0.90479 1.00013 0.94494 0.94859 0.93336 0.91080 0.87504 0.85115 0.84136 0.83828 0.84208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.91 71.98 0.64 -1.28 16 2 C -0.06 -1.20 2.90 -12.29 -0.04 -1.24 16 3 H 0.13 1.79 7.88 -2.39 -0.02 1.77 16 4 C 0.52 14.14 7.02 87.66 0.62 14.76 16 5 O -0.58 -21.16 14.73 -3.04 -0.04 -21.20 16 6 N -0.70 -18.59 5.07 -436.89 -2.21 -20.81 16 7 C 0.15 5.41 2.85 46.18 0.13 5.54 16 8 H 0.08 3.00 7.25 -2.38 -0.02 2.98 16 9 C -0.14 -5.50 6.77 31.99 0.22 -5.29 16 10 C 0.16 7.96 5.89 86.85 0.51 8.47 16 11 N -0.61 -30.60 3.13 -668.24 -2.09 -32.69 16 12 C -0.22 -12.12 9.89 84.03 0.83 -11.29 16 13 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 14 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 15 N -0.95 -56.78 10.09 21.65 0.22 -56.56 16 16 Si 0.98 45.20 29.55 68.60 2.03 47.22 16 17 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 18 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 19 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 20 C 0.15 5.81 3.48 45.35 0.16 5.97 16 21 H 0.05 1.92 7.72 -2.39 -0.02 1.90 16 22 C -0.15 -5.20 9.13 71.98 0.66 -4.54 16 23 C -0.08 -1.78 4.40 -19.86 -0.09 -1.87 16 24 C -0.10 -2.50 7.92 22.27 0.18 -2.32 16 25 C -0.14 -2.88 10.05 22.27 0.22 -2.66 16 26 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 27 C -0.13 -2.27 10.05 22.27 0.22 -2.04 16 28 C -0.12 -2.32 9.67 22.27 0.22 -2.10 16 29 H 0.05 0.87 7.40 -2.39 -0.02 0.85 16 30 H 0.08 0.90 7.56 -2.39 -0.02 0.88 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.41 8.35 7.78 -92.71 -0.72 7.63 16 33 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.08 4.40 5.87 -2.39 -0.01 4.38 16 36 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 37 H 0.25 14.27 8.31 -92.71 -0.77 13.49 16 38 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.05 1.77 8.04 -2.39 -0.02 1.75 16 40 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.11 2.69 7.52 -2.91 -0.02 2.67 16 42 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 43 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 44 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 45 H 0.14 1.97 7.95 -2.91 -0.02 1.95 16 Total: -1.00 -70.85 362.48 3.31 -67.53 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.25 Total: 21.98 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 5.17 Total: -5.48 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -4.09 Total: -110.06 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.04 Total: -21.20 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -70.85 3.31 -67.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088990226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.995 kcal (2) G-P(sol) polarization free energy of solvation -70.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds