Wall clock time and date at job start Tue Mar 31 2020 08:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46112 * 2 1 4 4 C 1.53037 * 109.44846 * 119.96289 * 2 1 3 5 5 C 1.53191 * 109.31405 * 181.37867 * 4 2 1 6 6 N 1.46926 * 108.77613 * 305.36628 * 5 4 2 7 7 C 1.34777 * 120.63227 * 233.62947 * 6 5 4 8 8 O 1.21548 * 120.00211 * 174.36697 * 7 6 5 9 9 C 1.47842 * 119.99991 * 354.36465 * 7 6 5 10 10 C 1.39578 * 120.14451 * 324.41964 * 9 7 6 11 11 C 1.37960 * 119.85404 * 179.74413 * 10 9 7 12 12 C 1.38359 * 120.14380 * 0.53550 * 11 10 9 13 13 C 1.38370 * 120.29142 * 359.73606 * 12 11 10 14 14 C 1.37963 * 120.14349 * 359.97438 * 13 12 11 15 15 C 1.46925 * 118.73767 * 53.60877 * 6 5 4 16 16 C 1.53042 * 109.46118 * 240.02522 * 2 1 3 17 17 H 1.08997 * 109.49759 * 298.57981 * 16 2 1 18 18 C 1.53005 * 109.49427 * 58.64703 * 16 2 1 19 19 N 1.46503 * 109.46656 * 185.00002 * 18 16 2 20 20 C 1.36933 * 119.99830 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00468 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00128 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99899 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00286 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47191 * 59.99784 * 24 22 20 26 26 H 1.48500 * 109.47368 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46759 * 299.99963 * 24 22 20 28 28 H 1.08992 * 109.47090 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47020 * 300.00234 * 1 2 3 30 30 H 1.09002 * 109.47034 * 60.00263 * 1 2 3 31 31 H 1.08994 * 109.49914 * 301.32933 * 4 2 1 32 32 H 1.08999 * 109.49828 * 61.43047 * 4 2 1 33 33 H 1.08998 * 109.58807 * 185.57706 * 5 4 2 34 34 H 1.09005 * 109.70714 * 65.22368 * 5 4 2 35 35 H 1.07999 * 120.07392 * 0.02562 * 10 9 7 36 36 H 1.08000 * 119.93071 * 180.26996 * 11 10 9 37 37 H 1.08000 * 119.85663 * 179.72144 * 12 11 10 38 38 H 1.07994 * 119.92297 * 179.97438 * 13 12 11 39 39 H 1.07994 * 120.06636 * 180.02562 * 14 13 12 40 40 H 1.09002 * 109.58990 * 186.60687 * 15 6 5 41 41 H 1.09000 * 109.58919 * 66.17775 * 15 6 5 42 42 H 1.08996 * 109.47092 * 304.99554 * 18 16 2 43 43 H 1.08995 * 109.47465 * 64.99874 * 18 16 2 44 44 H 0.97005 * 120.00260 * 359.97438 * 19 18 16 45 45 H 0.96999 * 120.00081 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0395 -0.7207 1.2502 5 6 3.5710 -0.6889 1.2646 6 7 4.0676 -1.2493 0.0004 7 6 4.9610 -2.2585 0.0006 8 8 5.2868 -2.7819 -1.0469 9 6 5.5448 -2.7287 1.2749 10 6 5.8173 -1.8199 2.2986 11 6 6.3572 -2.2660 3.4872 12 6 6.6387 -3.6094 3.6616 13 6 6.3762 -4.5147 2.6487 14 6 5.8309 -4.0825 1.4573 15 6 3.5714 -0.6890 -1.2639 16 6 2.0399 -0.7209 -1.2500 17 1 1.6976 -1.7557 -1.2382 18 6 1.5024 -0.0194 -2.4990 19 7 1.8914 -0.7779 -3.6905 20 6 1.5196 -0.3389 -4.9331 21 1 0.9400 0.5667 -5.0349 22 6 1.8877 -1.0578 -6.0621 23 7 2.5945 -2.1612 -5.9381 24 14 1.3811 -0.4586 -7.7573 25 1 1.9462 0.8942 -7.9935 26 1 1.8953 -1.3961 -8.7879 27 1 -0.1004 -0.3973 -7.8383 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6569 -0.2206 2.1398 32 1 1.6973 -1.7555 1.2384 33 1 3.9411 -1.2848 2.0988 34 1 3.9163 0.3398 1.3688 35 1 5.6018 -0.7705 2.1622 36 1 6.5645 -1.5645 4.2818 37 1 7.0655 -3.9529 4.5924 38 1 6.5987 -5.5619 2.7910 39 1 5.6261 -4.7903 0.6677 40 1 3.9416 -1.2851 -2.0981 41 1 3.9145 0.3404 -1.3671 42 1 0.4154 0.0382 -2.4439 43 1 1.9171 0.9869 -2.5574 44 1 2.4124 -1.5911 -3.5992 45 1 2.8515 -2.6638 -6.7270 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132599824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:32 Heat of formation + Delta-G solvation = 4.155833 kcal Electronic energy + Delta-G solvation = -24864.251196 eV Core-core repulsion = 21460.767967 eV Total energy + Delta-G solvation = -3403.483229 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.64317 -38.85990 -37.63117 -35.02106 -33.71760 -32.02713 -31.30577 -31.18147 -29.69601 -28.13992 -25.69047 -24.34370 -23.29186 -22.62045 -22.49806 -21.19239 -20.09198 -19.29886 -17.42788 -16.94188 -16.65588 -16.02959 -15.40865 -14.82427 -14.80103 -14.60003 -14.39771 -13.93638 -13.80021 -13.67682 -13.43558 -13.21762 -12.97721 -12.76407 -12.65539 -12.43602 -11.93114 -11.79562 -11.66511 -11.48030 -11.24838 -10.95443 -10.85261 -10.75835 -10.56566 -10.27573 -10.13024 -9.95582 -9.68921 -9.54511 -9.18425 -9.05519 -8.80203 -8.45503 -6.83737 -5.67078 -2.96845 0.77082 1.12274 2.82239 3.06329 3.49075 3.52921 3.54757 3.63980 4.40350 4.59427 4.64340 4.68767 4.75675 4.82705 4.89198 4.93443 5.15031 5.16788 5.26956 5.28923 5.41646 5.55749 5.64061 5.67683 5.70223 5.74487 5.76264 5.84116 5.94580 5.98974 6.04496 6.09578 6.17632 6.21134 6.21566 6.26957 6.36042 6.48192 6.60450 6.62617 6.71274 6.84965 6.93486 7.51849 7.76017 8.29130 8.50584 9.61355 10.19889 10.54033 11.55113 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.018340 B = 0.003622 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.332245 B = 7728.793552 C = 8918.289775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.071 0.929 4 C -0.129 4.129 5 C 0.093 3.907 6 N -0.604 5.604 7 C 0.551 3.449 8 O -0.523 6.523 9 C -0.123 4.123 10 C -0.094 4.094 11 C -0.130 4.130 12 C -0.102 4.102 13 C -0.127 4.127 14 C -0.066 4.066 15 C 0.120 3.880 16 C -0.101 4.101 17 H 0.074 0.926 18 C 0.159 3.841 19 N -0.733 5.733 20 C -0.242 4.242 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.929 5.929 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.287 1.287 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.105 0.895 41 H 0.067 0.933 42 H 0.027 0.973 43 H 0.018 0.982 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.355 1.253 24.756 25.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.089 0.911 4 C -0.167 4.167 5 C -0.030 4.030 6 N -0.337 5.337 7 C 0.339 3.661 8 O -0.399 6.399 9 C -0.126 4.126 10 C -0.113 4.113 11 C -0.148 4.148 12 C -0.121 4.121 13 C -0.145 4.145 14 C -0.085 4.085 15 C -0.002 4.002 16 C -0.121 4.121 17 H 0.092 0.908 18 C 0.031 3.969 19 N -0.378 5.378 20 C -0.373 4.373 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.578 5.578 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.214 1.214 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.036 0.964 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.466 1.068 24.026 24.461 hybrid contribution -0.134 0.084 -0.907 0.920 sum 4.332 1.152 23.120 23.550 Atomic orbital electron populations 1.21879 0.94967 1.01963 1.01678 1.21098 0.95980 0.99318 0.93975 0.91097 1.21995 0.94635 1.01641 0.98422 1.22222 0.94944 0.99093 0.86715 1.48057 1.42710 1.35121 1.07852 1.18390 0.79429 0.79550 0.88701 1.90860 1.60685 1.55615 1.32782 1.20027 1.03058 0.94883 0.94600 1.21533 0.97305 0.99801 0.92631 1.21107 1.00057 0.96051 0.97555 1.21338 0.98358 0.93431 0.98940 1.21156 0.99804 1.00103 0.93395 1.21295 0.95299 0.94543 0.97337 1.21767 0.93837 0.99013 0.85547 1.21711 0.94446 1.00786 0.95151 0.90768 1.20720 0.96816 0.94006 0.85370 1.42417 1.65391 1.29159 1.00803 1.19150 1.28043 1.06324 0.83830 0.91325 1.24755 1.00845 0.97518 0.97782 1.69667 1.42296 1.17175 1.28620 0.86290 0.77953 0.77637 0.84408 1.21323 1.21717 1.21352 0.92787 0.93247 0.91621 0.90874 0.91474 0.88809 0.91332 0.84853 0.85494 0.85756 0.85402 0.84906 0.87714 0.91521 0.95536 0.96434 0.78094 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.81 37.16 0.33 -1.43 16 2 C -0.08 -1.06 2.23 -90.58 -0.20 -1.26 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -1.33 5.36 -26.61 -0.14 -1.48 16 5 C 0.09 0.97 4.78 -3.71 -0.02 0.95 16 6 N -0.60 -8.86 2.97 -173.88 -0.52 -9.37 16 7 C 0.55 9.10 7.38 -12.33 -0.09 9.01 16 8 O -0.52 -11.13 16.25 5.32 0.09 -11.04 16 9 C -0.12 -1.58 5.29 -104.97 -0.56 -2.13 16 10 C -0.09 -0.92 7.36 -39.18 -0.29 -1.21 16 11 C -0.13 -1.03 10.03 -39.64 -0.40 -1.42 16 12 C -0.10 -0.80 10.04 -39.49 -0.40 -1.20 16 13 C -0.13 -1.15 10.03 -39.63 -0.40 -1.55 16 14 C -0.07 -0.79 9.61 -39.18 -0.38 -1.16 16 15 C 0.12 2.07 5.53 -3.71 -0.02 2.05 16 16 C -0.10 -1.69 1.92 -90.50 -0.17 -1.86 16 17 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 18 C 0.16 3.22 5.41 -4.04 -0.02 3.20 16 19 N -0.73 -19.18 5.38 -59.91 -0.32 -19.50 16 20 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 21 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -29.31 13.06 55.49 0.72 -28.59 16 24 Si 0.91 23.05 29.55 -169.99 -5.02 18.02 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.86 6.29 -51.93 -0.33 0.53 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.85 4.46 -51.93 -0.23 0.61 16 34 H 0.07 0.60 8.05 -51.93 -0.42 0.19 16 35 H 0.13 1.11 6.06 -52.49 -0.32 0.79 16 36 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.13 1.66 8.01 -52.49 -0.42 1.24 16 40 H 0.10 2.27 6.21 -51.93 -0.32 1.95 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.03 0.54 6.14 -51.93 -0.32 0.22 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.38 10.83 6.90 -40.82 -0.28 10.55 16 45 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 355.37 15.07 5.36 5.36 Total: -1.00 -34.46 355.37 -9.53 -43.99 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.83 Total: 8.22 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -3.00 Total: -7.09 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.11 Total: -57.46 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.46 -9.53 -43.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132599824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.144 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds